Cow genome map


           Conread name:
           Ss1.1-Pig4-TMW8021O16.3
        

               Conread position:
               1-410
               

               Cow position:
               chr1:38479434-38478999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               291
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               84, 90
               

               Conread position:
               6-773
               

               Cow position:
               chr1:101787124-101787934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               823
               

               Alignm identity:
               529
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 106
               

               Conread position:
               54-471
               

               Cow position:
               chr1:68854718-68854277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 19
               

               Conread position:
               62-532
               

               Cow position:
               chr1:7416258-7415745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               515
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 45
               

               Conread position:
               62-757
               

               Cow position:
               chr1:26446920-26446175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               754
               

               Alignm identity:
               534
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 9
               

               Conread position:
               70-834
               

               Cow position:
               chr1:88179630-88178796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               839
               

               Alignm identity:
               578
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 25
               

               Conread position:
               71-467
               

               Cow position:
               chr1:72114906-72114467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               306
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               73, 36
               

               Conread position:
               73-223
               

               Cow position:
               chr1:43448266-43448418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               73, 27
               

               Conread position:
               73-327
               

               Cow position:
               chr1:72462646-72462372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               21, 39
               

               Conread position:
               73-337
               

               Cow position:
               chr1:56408081-56407806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               22, 18
               

               Conread position:
               73-381
               

               Cow position:
               chr1:52039086-52038743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               236
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               71, 34
               

               Conread position:
               73-382
               

               Cow position:
               chr1:30312196-30311850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               58, 34
               

               Conread position:
               73-403
               

               Cow position:
               chr1:29901486-29901837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               249
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               19, 37
               

               Conread position:
               73-410
               

               Cow position:
               chr1:80901726-80902089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               241
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               62, 34
               

               Conread position:
               73-446
               

               Cow position:
               chr1:70068642-70069064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               292
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               58, 34
               

               Conread position:
               73-453
               

               Cow position:
               chr1:94464880-94464453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               294
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               46, 34
               

               Conread position:
               73-456
               

               Cow position:
               chr1:57636381-57635948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               298
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               66, 34
               

               Conread position:
               73-467
               

               Cow position:
               chr1:3440731-3440289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               311
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               58, 28
               

               Conread position:
               73-528
               

               Cow position:
               chr1:72589595-72590102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               339
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               71, 34
               

               Conread position:
               73-547
               

               Cow position:
               chr1:68951151-68950647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 28
               

               Conread position:
               73-551
               

               Cow position:
               chr1:33900308-33899781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 34
               

               Conread position:
               73-551
               

               Cow position:
               chr1:86497058-86496525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               361
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               19, 39
               

               Conread position:
               73-594
               

               Cow position:
               chr1:50764901-50764343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               572
               

               Alignm identity:
               377
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               26, 39
               

               Conread position:
               73-623
               

               Cow position:
               chr1:99117779-99117168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               615
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 29
               

               Conread position:
               73-645
               

               Cow position:
               chr1:7162050-7162676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               628
               

               Alignm identity:
               417
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 34
               

               Conread position:
               73-645
               

               Cow position:
               chr1:71691322-71690703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 18
               

               Conread position:
               73-645
               

               Cow position:
               chr1:98988658-98989277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               404
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               66, 34
               

               Conread position:
               73-735
               

               Cow position:
               chr1:29429373-29428634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               744
               

               Alignm identity:
               496
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 18
               

               Conread position:
               73-751
               

               Cow position:
               chr1:53520415-53519687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               738
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 34
               

               Conread position:
               73-795
               

               Cow position:
               chr1:83136703-83135937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               774
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 34
               

               Conread position:
               73-800
               

               Cow position:
               chr1:76565090-76564335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               766
               

               Alignm identity:
               469
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               61, 18
               

               Conread position:
               73-806
               

               Cow position:
               chr1:73443115-73443883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               788
               

               Alignm identity:
               525
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 39
               

               Conread position:
               73-808
               

               Cow position:
               chr1:89484868-89484080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               806
               

               Alignm identity:
               544
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 34
               

               Conread position:
               73-810
               

               Cow position:
               chr1:54116995-54116210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               793
               

               Alignm identity:
               522
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 58
               

               Conread position:
               73-818
               

               Cow position:
               chr1:73761782-73762575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               806
               

               Alignm identity:
               554
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 28
               

               Conread position:
               73-819
               

               Cow position:
               chr1:40680961-40681778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               821
               

               Alignm identity:
               561
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 34
               

               Conread position:
               73-825
               

               Cow position:
               chr1:76617720-76618526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               818
               

               Alignm identity:
               565
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 40
               

               Conread position:
               73-825
               

               Cow position:
               chr1:101834142-101833354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               804
               

               Alignm identity:
               536
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 34
               

               Conread position:
               73-829
               

               Cow position:
               chr1:48810464-48811249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               801
               

               Alignm identity:
               535
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 35
               

               Conread position:
               73-831
               

               Cow position:
               chr1:56140627-56141412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               812
               

               Alignm identity:
               538
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 22
               

               Conread position:
               73-834
               

               Cow position:
               chr1:20832650-20831820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               836
               

               Alignm identity:
               569
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 34
               

               Conread position:
               73-834
               

               Cow position:
               chr1:26588717-26587889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               832
               

               Alignm identity:
               570
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 39
               

               Conread position:
               73-834
               

               Cow position:
               chr1:52754766-52755594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               833
               

               Alignm identity:
               565
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 18
               

               Conread position:
               73-834
               

               Cow position:
               chr1:93858281-93857461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               824
               

               Alignm identity:
               563
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 18
               

               Conread position:
               74-375
               

               Cow position:
               chr1:40310513-40310187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               235
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               19, 28
               

               Conread position:
               74-540
               

               Cow position:
               chr1:46694149-46694660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               343
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               24, 38
               

               Conread position:
               74-819
               

               Cow position:
               chr1:89185697-89186487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               811
               

               Alignm identity:
               536
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 27
               

               Conread position:
               75-367
               

               Cow position:
               chr1:53494959-53494643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               217
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               74, 32
               

               Conread position:
               75-382
               

               Cow position:
               chr1:72035683-72036021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               74, 16
               

               Conread position:
               75-571
               

               Cow position:
               chr1:20377839-20378380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               357
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               20, 16
               

               Conread position:
               76-387
               

               Cow position:
               chr1:95655184-95655518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               73, 15
               

               Conread position:
               76-472
               

               Cow position:
               chr1:40061950-40061544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               291
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               146, 31
               

               Conread position:
               77-527
               

               Cow position:
               chr1:89766778-89767267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               339
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               28, 34
               

               Conread position:
               95-834
               

               Cow position:
               chr1:33547667-33548461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               800
               

               Alignm identity:
               554
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 34
               

               Conread position:
               96-825
               

               Cow position:
               chr1:19440814-19441578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               772
               

               Alignm identity:
               525
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 26
               

               Conread position:
               101-834
               

               Cow position:
               chr1:100421310-100420543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               778
               

               Alignm identity:
               543
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 27
               

               Conread position:
               105-834
               

               Cow position:
               chr1:56425634-56424849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               789
               

               Alignm identity:
               537
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 17
               

               Conread position:
               108-395
               

               Cow position:
               chr1:71666753-71667064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               211
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               109-834
               

               Cow position:
               chr1:72997686-72996920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               778
               

               Alignm identity:
               488
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               50, 19
               

               Conread position:
               113-644
               

               Cow position:
               chr1:85142501-85143091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               592
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 15
               

               Conread position:
               122-522
               

               Cow position:
               chr1:68282243-68281818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               286
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               122-824
               

               Cow position:
               chr1:79632849-79633604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               758
               

               Alignm identity:
               527
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 364
               

               Conread position:
               123-368
               

               Cow position:
               chr1:22616207-22616470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               16, 252
               

               Conread position:
               123-410
               

               Cow position:
               chr1:81356592-81356902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               21, 41
               

               Conread position:
               123-817
               

               Cow position:
               chr1:57573891-57574625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               743
               

               Alignm identity:
               505
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 358
               

               Conread position:
               124-365
               

               Cow position:
               chr1:51393872-51393614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               16, 155
               

               Conread position:
               124-720
               

               Cow position:
               chr1:13718141-13718779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               647
               

               Alignm identity:
               462
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 34
               

               Conread position:
               137-522
               

               Cow position:
               chr1:16116710-16117130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               284
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               22, 142
               

               Conread position:
               138-468
               

               Cow position:
               chr1:29380244-29380588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               229
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               14, 22
               

               Conread position:
               139-467
               

               Cow position:
               chr1:23117521-23117882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               263
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               20, 295
               

               Conread position:
               139-467
               

               Cow position:
               chr1:97075815-97076175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               250
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               141-747
               

               Cow position:
               chr1:30372573-30371930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               652
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 15
               

               Conread position:
               142-825
               

               Cow position:
               chr1:13404703-13405438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               742
               

               Alignm identity:
               504
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 17
               

               Conread position:
               142-825
               

               Cow position:
               chr1:53372046-53371305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               748
               

               Alignm identity:
               515
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 14
               

               Conread position:
               142-834
               

               Cow position:
               chr1:8470481-8471221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               747
               

               Alignm identity:
               497
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 17
               

               Conread position:
               142-834
               

               Cow position:
               chr1:68846043-68846763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               734
               

               Alignm identity:
               530
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 17
               

               Conread position:
               142-834
               

               Cow position:
               chr1:102552666-102551950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               723
               

               Alignm identity:
               483
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 14
               

               Conread position:
               143-293
               

               Cow position:
               chr1:51444938-51444781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               80, 13
               

               Conread position:
               143-328
               

               Cow position:
               chr1:24909900-24910088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               79, 13
               

               Conread position:
               143-329
               

               Cow position:
               chr1:81779349-81779146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               78, 13
               

               Conread position:
               143-337
               

               Cow position:
               chr1:8514943-8514745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               8, 17
               

               Conread position:
               143-337
               

               Cow position:
               chr1:42174994-42174783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               74, 13
               

               Conread position:
               143-368
               

               Cow position:
               chr1:31708288-31708046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-372
               

               Cow position:
               chr1:78558108-78557858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-376
               

               Cow position:
               chr1:40351536-40351282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-381
               

               Cow position:
               chr1:88677149-88676892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               192
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               8, 17
               

               Conread position:
               143-382
               

               Cow position:
               chr1:10936964-10936704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-382
               

               Cow position:
               chr1:47923187-47923440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-382
               

               Cow position:
               chr1:58172570-58172317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               77, 13
               

               Conread position:
               143-382
               

               Cow position:
               chr1:71123958-71124218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-382
               

               Cow position:
               chr1:72808260-72808000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-393
               

               Cow position:
               chr1:28413159-28413424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               9, 17
               

               Conread position:
               143-395
               

               Cow position:
               chr1:77461811-77461536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               8, 17
               

               Conread position:
               143-409
               

               Cow position:
               chr1:77619966-77619675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               79, 13
               

               Conread position:
               143-436
               

               Cow position:
               chr1:15743498-15743177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               79, 13
               

               Conread position:
               143-449
               

               Cow position:
               chr1:81320646-81320983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               8, 18
               

               Conread position:
               143-453
               

               Cow position:
               chr1:3931959-3932300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               239
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-453
               

               Cow position:
               chr1:20848850-20849191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               239
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-453
               

               Cow position:
               chr1:66368712-66369053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               239
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-467
               

               Cow position:
               chr1:99837666-99838025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               250
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               77, 13
               

               Conread position:
               143-478
               

               Cow position:
               chr1:61283100-61282738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               256
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               8, 17
               

               Conread position:
               143-512
               

               Cow position:
               chr1:44078742-44079139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 13
               

               Conread position:
               143-517
               

               Cow position:
               chr1:74513462-74513869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               280
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-517
               

               Cow position:
               chr1:83059961-83060367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               280
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-522
               

               Cow position:
               chr1:56190738-56191149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               282
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               79, 13
               

               Conread position:
               143-522
               

               Cow position:
               chr1:79334303-79334718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               281
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               143-528
               

               Cow position:
               chr1:3930659-3931078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               294
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               79, 13
               

               Conread position:
               143-528
               

               Cow position:
               chr1:66145381-66144962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               286
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-528
               

               Cow position:
               chr1:77925162-77924743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               284
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-533
               

               Cow position:
               chr1:67290294-67289877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               281
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               78, 13
               

               Conread position:
               143-537
               

               Cow position:
               chr1:40089047-40088626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               274
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               9, 17
               

               Conread position:
               143-539
               

               Cow position:
               chr1:19828314-19828729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               284
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-540
               

               Cow position:
               chr1:3263667-3263236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               287
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               79, 13
               

               Conread position:
               143-540
               

               Cow position:
               chr1:12374623-12375057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               300
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-551
               

               Cow position:
               chr1:2990164-2989719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               305
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-554
               

               Cow position:
               chr1:4337438-4337003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               290
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               79, 13
               

               Conread position:
               143-580
               

               Cow position:
               chr1:31645948-31646423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-580
               

               Cow position:
               chr1:55158701-55159182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               330
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               79, 13
               

               Conread position:
               143-594
               

               Cow position:
               chr1:34858019-34858487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               328
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               88, 13
               

               Conread position:
               143-632
               

               Cow position:
               chr1:23861028-23861564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               539
               

               Alignm identity:
               361
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-635
               

               Cow position:
               chr1:102815154-102814615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               541
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 16
               

               Conread position:
               143-644
               

               Cow position:
               chr1:53578736-53578190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               551
               

               Alignm identity:
               366
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-645
               

               Cow position:
               chr1:56666781-56666232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               552
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-645
               

               Cow position:
               chr1:77554322-77554865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               549
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-645
               

               Cow position:
               chr1:89234352-89234900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               551
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-645
               

               Cow position:
               chr1:99674655-99675204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               552
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-680
               

               Cow position:
               chr1:19157776-19158366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               593
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-686
               

               Cow position:
               chr1:8517389-8517985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               599
               

               Alignm identity:
               402
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-714
               

               Cow position:
               chr1:38418490-38417877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               622
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 13
               

               Conread position:
               143-733
               

               Cow position:
               chr1:53650323-53649692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               642
               

               Alignm identity:
               477
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 16
               

               Conread position:
               143-753
               

               Cow position:
               chr1:85773886-85773245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               654
               

               Alignm identity:
               454
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 16
               

               Conread position:
               143-755
               

               Cow position:
               chr1:71792610-71791939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               675
               

               Alignm identity:
               455
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 13
               

               Conread position:
               143-758
               

               Cow position:
               chr1:80564396-80565063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               671
               

               Alignm identity:
               459
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 17
               

               Conread position:
               143-760
               

               Cow position:
               chr1:26536505-26537174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               673
               

               Alignm identity:
               463
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-765
               

               Cow position:
               chr1:83170123-83169447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               680
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-766
               

               Cow position:
               chr1:55043583-55044256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               677
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 13
               

               Conread position:
               143-774
               

               Cow position:
               chr1:68145290-68145973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               687
               

               Alignm identity:
               469
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-777
               

               Cow position:
               chr1:20001327-20002002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               686
               

               Alignm identity:
               479
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 13
               

               Conread position:
               143-801
               

               Cow position:
               chr1:31535532-31534823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               714
               

               Alignm identity:
               492
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-808
               

               Cow position:
               chr1:47454300-47455013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               720
               

               Alignm identity:
               494
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 13
               

               Conread position:
               143-819
               

               Cow position:
               chr1:20846332-20847060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               732
               

               Alignm identity:
               510
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-819
               

               Cow position:
               chr1:26811394-26812119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               729
               

               Alignm identity:
               500
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 13
               

               Conread position:
               143-819
               

               Cow position:
               chr1:66971491-66972204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               719
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 13
               

               Conread position:
               143-820
               

               Cow position:
               chr1:42874984-42875691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               725
               

               Alignm identity:
               535
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 16
               

               Conread position:
               143-821
               

               Cow position:
               chr1:9262177-9261463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               725
               

               Alignm identity:
               496
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-822
               

               Cow position:
               chr1:66491258-66490532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               730
               

               Alignm identity:
               508
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 13
               

               Conread position:
               143-825
               

               Cow position:
               chr1:21376882-21377611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               736
               

               Alignm identity:
               499
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 13
               

               Conread position:
               143-825
               

               Cow position:
               chr1:28876778-28876039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               743
               

               Alignm identity:
               513
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 13
               

               Conread position:
               143-825
               

               Cow position:
               chr1:63046562-63045832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               734
               

               Alignm identity:
               507
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-825
               

               Cow position:
               chr1:63049246-63048526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               728
               

               Alignm identity:
               500
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 13
               

               Conread position:
               143-825
               

               Cow position:
               chr1:75403575-75402843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               738
               

               Alignm identity:
               515
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-825
               

               Cow position:
               chr1:90913509-90912776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               736
               

               Alignm identity:
               509
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 9
               

               Conread position:
               143-826
               

               Cow position:
               chr1:63602107-63602838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               739
               

               Alignm identity:
               509
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 13
               

               Conread position:
               143-829
               

               Cow position:
               chr1:19235816-19236552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               742
               

               Alignm identity:
               510
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-830
               

               Cow position:
               chr1:85795629-85794900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               739
               

               Alignm identity:
               518
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-832
               

               Cow position:
               chr1:42887822-42888550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               746
               

               Alignm identity:
               530
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 13
               

               Conread position:
               143-834
               

               Cow position:
               chr1:3340345-3339599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               751
               

               Alignm identity:
               527
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 13
               

               Conread position:
               143-834
               

               Cow position:
               chr1:15148963-15149705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               745
               

               Alignm identity:
               508
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 13
               

               Conread position:
               143-834
               

               Cow position:
               chr1:18196276-18195562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               736
               

               Alignm identity:
               482
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 13
               

               Conread position:
               143-834
               

               Cow position:
               chr1:33854947-33854220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               741
               

               Alignm identity:
               516
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-834
               

               Cow position:
               chr1:49268561-49267821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               744
               

               Alignm identity:
               509
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 16
               

               Conread position:
               143-834
               

               Cow position:
               chr1:55273363-55274099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               746
               

               Alignm identity:
               515
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-834
               

               Cow position:
               chr1:56205133-56205872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               745
               

               Alignm identity:
               515
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-834
               

               Cow position:
               chr1:57571513-57570775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               747
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 20
               

               Conread position:
               143-834
               

               Cow position:
               chr1:57660278-57659557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               733
               

               Alignm identity:
               484
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 13
               

               Conread position:
               143-834
               

               Cow position:
               chr1:59483186-59483925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               743
               

               Alignm identity:
               520
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-834
               

               Cow position:
               chr1:61097181-61096436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               750
               

               Alignm identity:
               513
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-834
               

               Cow position:
               chr1:61331282-61332024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               747
               

               Alignm identity:
               512
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-834
               

               Cow position:
               chr1:67831454-67832198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               748
               

               Alignm identity:
               519
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-834
               

               Cow position:
               chr1:69406839-69406096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               746
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 13
               

               Conread position:
               143-834
               

               Cow position:
               chr1:69503693-69504433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               746
               

               Alignm identity:
               514
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 13
               

               Conread position:
               143-834
               

               Cow position:
               chr1:76873558-76872820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               742
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 13
               

               Conread position:
               143-834
               

               Cow position:
               chr1:86544462-86545199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               746
               

               Alignm identity:
               527
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               143-834
               

               Cow position:
               chr1:99917120-99916375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               749
               

               Alignm identity:
               516
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 13
               

               Conread position:
               143-835
               

               Cow position:
               chr1:6196599-6197338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               744
               

               Alignm identity:
               514
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 13
               

               Conread position:
               144-382
               

               Cow position:
               chr1:33040498-33040239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               9, 15
               

               Conread position:
               144-465
               

               Cow position:
               chr1:70380733-70381083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               256
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               7, 15
               

               Conread position:
               144-480
               

               Cow position:
               chr1:95765706-95766067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               244
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               76, 12
               

               Conread position:
               144-522
               

               Cow position:
               chr1:4375124-4375515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 14
               

               Conread position:
               144-540
               

               Cow position:
               chr1:51980651-51980232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               296
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               80, 12
               

               Conread position:
               144-571
               

               Cow position:
               chr1:22790075-22789611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               324
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               7, 17
               

               Conread position:
               144-579
               

               Cow position:
               chr1:98789522-98789069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               297
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               7, 16
               

               Conread position:
               144-787
               

               Cow position:
               chr1:77657215-77656534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               696
               

               Alignm identity:
               492
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 16
               

               Conread position:
               144-806
               

               Cow position:
               chr1:71599647-71600296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               680
               

               Alignm identity:
               413
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               7, 16
               

               Conread position:
               144-813
               

               Cow position:
               chr1:51892724-51893430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               718
               

               Alignm identity:
               440
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               7, 17
               

               Conread position:
               144-815
               

               Cow position:
               chr1:86364146-86363430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               732
               

               Alignm identity:
               464
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               7, 15
               

               Conread position:
               144-819
               

               Cow position:
               chr1:14528786-14529505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               726
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 12
               

               Conread position:
               144-825
               

               Cow position:
               chr1:10005315-10006030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               726
               

               Alignm identity:
               474
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 17
               

               Conread position:
               144-834
               

               Cow position:
               chr1:27309412-27310118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               727
               

               Alignm identity:
               477
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 12
               

               Conread position:
               144-834
               

               Cow position:
               chr1:78921329-78922075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               750
               

               Alignm identity:
               523
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 15
               

               Conread position:
               144-834
               

               Cow position:
               chr1:79914582-79913864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               730
               

               Alignm identity:
               461
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               7, 16
               

               Conread position:
               145-451
               

               Cow position:
               chr1:71081169-71081502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 15
               

               Conread position:
               145-470
               

               Cow position:
               chr1:57246780-57246419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               145-551
               

               Cow position:
               chr1:19483574-19484007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 14
               

               Conread position:
               145-580
               

               Cow position:
               chr1:62507566-62508048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               318
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               77, 11
               

               Conread position:
               145-597
               

               Cow position:
               chr1:88327805-88328299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               501
               

               Alignm identity:
               340
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               6, 15
               

               Conread position:
               145-644
               

               Cow position:
               chr1:73463645-73463098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               551
               

               Alignm identity:
               363
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               8, 16
               

               Conread position:
               145-684
               

               Cow position:
               chr1:30495233-30494655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               587
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 16
               

               Conread position:
               145-708
               

               Cow position:
               chr1:72306679-72307255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               605
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 14
               

               Conread position:
               145-817
               

               Cow position:
               chr1:11854277-11854997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               728
               

               Alignm identity:
               482
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 15
               

               Conread position:
               145-819
               

               Cow position:
               chr1:71559071-71559791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               728
               

               Alignm identity:
               512
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 14
               

               Conread position:
               145-825
               

               Cow position:
               chr1:61342033-61342764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               735
               

               Alignm identity:
               507
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 15
               

               Conread position:
               145-832
               

               Cow position:
               chr1:51967920-51967202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               729
               

               Alignm identity:
               527
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 18
               

               Conread position:
               145-834
               

               Cow position:
               chr1:21577231-21576486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               750
               

               Alignm identity:
               510
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 15
               

               Conread position:
               145-834
               

               Cow position:
               chr1:28811563-28812304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               745
               

               Alignm identity:
               522
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 14
               

               Conread position:
               145-834
               

               Cow position:
               chr1:42053905-42054592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               721
               

               Alignm identity:
               473
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 17
               

               Conread position:
               145-834
               

               Cow position:
               chr1:53308984-53309717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               740
               

               Alignm identity:
               508
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 14
               

               Conread position:
               145-834
               

               Cow position:
               chr1:82909154-82909891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               743
               

               Alignm identity:
               507
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 14
               

               Conread position:
               145-834
               

               Cow position:
               chr1:85776783-85777521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               743
               

               Alignm identity:
               503
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 17
               

               Conread position:
               146-364
               

               Cow position:
               chr1:43650227-43650471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               184
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               5, 14
               

               Conread position:
               146-404
               

               Cow position:
               chr1:27494917-27494635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               146-468
               

               Cow position:
               chr1:12057574-12057925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               251
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               146-528
               

               Cow position:
               chr1:70064775-70064377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               268
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               5, 14
               

               Conread position:
               146-703
               

               Cow position:
               chr1:20543900-20543295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               609
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 15
               

               Conread position:
               146-801
               

               Cow position:
               chr1:58419341-58418653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               700
               

               Alignm identity:
               471
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 14
               

               Conread position:
               146-830
               

               Cow position:
               chr1:13270725-13271441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               726
               

               Alignm identity:
               438
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               13, 58
               

               Conread position:
               147-358
               

               Cow position:
               chr1:40700538-40700308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               147-376
               

               Cow position:
               chr1:80974552-80974802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               12, 21
               

               Conread position:
               147-382
               

               Cow position:
               chr1:23370885-23371139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               184
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               147-382
               

               Cow position:
               chr1:69963631-69963884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               182
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               147-382
               

               Cow position:
               chr1:88297888-88297641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               12, 139
               

               Conread position:
               147-388
               

               Cow position:
               chr1:10067788-10068048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               12, 17
               

               Conread position:
               147-392
               

               Cow position:
               chr1:32360727-32360982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               184
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               75, 14
               

               Conread position:
               147-453
               

               Cow position:
               chr1:78291236-78290897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               234
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               147-462
               

               Cow position:
               chr1:20098765-20098432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               239
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               12, 95
               

               Conread position:
               147-480
               

               Cow position:
               chr1:4452408-4452772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               244
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               147-505
               

               Cow position:
               chr1:33392694-33392304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               271
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               12, 68
               

               Conread position:
               147-522
               

               Cow position:
               chr1:32562860-32563266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               277
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               147-538
               

               Cow position:
               chr1:22253739-22253326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 41
               

               Conread position:
               147-564
               

               Cow position:
               chr1:71045183-71044736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 291
               

               Conread position:
               147-571
               

               Cow position:
               chr1:57396663-57397103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               299
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               12, 115
               

               Conread position:
               147-580
               

               Cow position:
               chr1:70864922-70864460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               322
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               12, 326
               

               Conread position:
               147-580
               

               Cow position:
               chr1:100591095-100591571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               321
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               12, 55
               

               Conread position:
               147-634
               

               Cow position:
               chr1:55327566-55328083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 416
               

               Conread position:
               147-644
               

               Cow position:
               chr1:88530313-88530836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               341
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               10, 121
               

               Conread position:
               147-693
               

               Cow position:
               chr1:22227282-22226722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               580
               

               Alignm identity:
               381
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               12, 20
               

               Conread position:
               147-713
               

               Cow position:
               chr1:88563239-88563852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               615
               

               Alignm identity:
               404
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               12, 597
               

               Conread position:
               147-717
               

               Cow position:
               chr1:52054503-52053875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 606
               

               Conread position:
               147-735
               

               Cow position:
               chr1:9595266-9595901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               642
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 119
               

               Conread position:
               147-744
               

               Cow position:
               chr1:52354995-52355645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               653
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 571
               

               Conread position:
               147-765
               

               Cow position:
               chr1:14240388-14241052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               669
               

               Alignm identity:
               457
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 538
               

               Conread position:
               147-765
               

               Cow position:
               chr1:72812834-72812168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               669
               

               Alignm identity:
               457
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 377
               

               Conread position:
               147-796
               

               Cow position:
               chr1:8602297-8602994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               702
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 492
               

               Conread position:
               147-796
               

               Cow position:
               chr1:99571915-99572588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               685
               

               Alignm identity:
               482
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 84
               

               Conread position:
               147-799
               

               Cow position:
               chr1:58340593-58339895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               707
               

               Alignm identity:
               477
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 288
               

               Conread position:
               147-805
               

               Cow position:
               chr1:57120155-57120853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               714
               

               Alignm identity:
               488
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 297
               

               Conread position:
               147-808
               

               Cow position:
               chr1:30531355-30532055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               482
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 129
               

               Conread position:
               147-819
               

               Cow position:
               chr1:25553481-25552760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               725
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 59
               

               Conread position:
               147-824
               

               Cow position:
               chr1:95474231-95474940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               724
               

               Alignm identity:
               499
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 332
               

               Conread position:
               147-825
               

               Cow position:
               chr1:20866932-20867656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               729
               

               Alignm identity:
               476
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 34
               

               Conread position:
               147-825
               

               Cow position:
               chr1:24440382-24441100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               725
               

               Alignm identity:
               495
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 471
               

               Conread position:
               147-825
               

               Cow position:
               chr1:57362654-57363384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               734
               

               Alignm identity:
               508
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 572
               

               Conread position:
               147-825
               

               Cow position:
               chr1:86599332-86600068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               738
               

               Alignm identity:
               511
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 613
               

               Conread position:
               147-828
               

               Cow position:
               chr1:56644210-56644937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               740
               

               Alignm identity:
               510
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 349
               

               Conread position:
               147-829
               

               Cow position:
               chr1:82920462-82921205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               748
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 316
               

               Conread position:
               147-833
               

               Cow position:
               chr1:25088000-25088733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               736
               

               Alignm identity:
               481
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 176
               

               Conread position:
               147-834
               

               Cow position:
               chr1:8828699-8827959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               744
               

               Alignm identity:
               513
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 281
               

               Conread position:
               147-834
               

               Cow position:
               chr1:13250868-13251581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               732
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 55
               

               Conread position:
               147-834
               

               Cow position:
               chr1:17938074-17938814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               742
               

               Alignm identity:
               492
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 610
               

               Conread position:
               147-834
               

               Cow position:
               chr1:18024141-18024858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               733
               

               Alignm identity:
               476
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 557
               

               Conread position:
               147-834
               

               Cow position:
               chr1:33716639-33715895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               747
               

               Alignm identity:
               503
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 572
               

               Conread position:
               147-834
               

               Cow position:
               chr1:54933606-54932866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               742
               

               Alignm identity:
               504
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 606
               

               Conread position:
               147-834
               

               Cow position:
               chr1:61746502-61747219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               738
               

               Alignm identity:
               480
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 116
               

               Conread position:
               147-834
               

               Cow position:
               chr1:61747780-61748505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               732
               

               Alignm identity:
               537
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 348
               

               Conread position:
               147-834
               

               Cow position:
               chr1:94663332-94662592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               744
               

               Alignm identity:
               510
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 573
               

               Conread position:
               148-382
               

               Cow position:
               chr1:102010600-102010857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               11, 27
               

               Conread position:
               148-457
               

               Cow position:
               chr1:87830919-87830586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               227
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               11, 94
               

               Conread position:
               148-520
               

               Cow position:
               chr1:82880102-82879705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               282
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               11, 51
               

               Conread position:
               148-720
               

               Cow position:
               chr1:58439619-58440241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               627
               

               Alignm identity:
               452
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 40
               

               Conread position:
               148-758
               

               Cow position:
               chr1:25119612-25120255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               649
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 505
               

               Conread position:
               148-769
               

               Cow position:
               chr1:42057262-42056622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               652
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 151
               

               Conread position:
               148-804
               

               Cow position:
               chr1:20078485-20079182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               705
               

               Alignm identity:
               445
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               11, 442
               

               Conread position:
               148-819
               

               Cow position:
               chr1:45006619-45005922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               722
               

               Alignm identity:
               480
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 47
               

               Conread position:
               148-825
               

               Cow position:
               chr1:5505616-5504887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               734
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 361
               

               Conread position:
               148-825
               

               Cow position:
               chr1:7837079-7837801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               729
               

               Alignm identity:
               503
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 443
               

               Conread position:
               148-834
               

               Cow position:
               chr1:21113751-21114482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               739
               

               Alignm identity:
               477
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 28
               

               Conread position:
               148-834
               

               Cow position:
               chr1:65390239-65389497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               745
               

               Alignm identity:
               512
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 574
               

               Conread position:
               148-834
               

               Cow position:
               chr1:67078149-67078886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               739
               

               Alignm identity:
               508
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 605
               

               Conread position:
               149-657
               

               Cow position:
               chr1:53488138-53487599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               549
               

               Alignm identity:
               359
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               73, 10
               

               Conread position:
               150-440
               

               Cow position:
               chr1:31238511-31238835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               230
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               69, 8
               

               Conread position:
               150-592
               

               Cow position:
               chr1:102784203-102783728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 226
               

               Conread position:
               151-548
               

               Cow position:
               chr1:64717218-64717653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               292
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               152-633
               

               Cow position:
               chr1:90393088-90393610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               352
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               71, 7
               

               Conread position:
               153-333
               

               Cow position:
               chr1:37420589-37420789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               6, 18
               

               Conread position:
               153-571
               

               Cow position:
               chr1:76748722-76749178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               314
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               27, 346
               

               Conread position:
               153-609
               

               Cow position:
               chr1:33537764-33537265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               335
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               69, 41
               

               Conread position:
               153-645
               

               Cow position:
               chr1:46821285-46820747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               542
               

               Alignm identity:
               365
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               6, 23
               

               Conread position:
               153-834
               

               Cow position:
               chr1:30066049-30065317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               738
               

               Alignm identity:
               504
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 458
               

               Conread position:
               154-591
               

               Cow position:
               chr1:54163429-54163894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               321
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               5, 133
               

               Conread position:
               154-834
               

               Cow position:
               chr1:102321454-102322162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               717
               

               Alignm identity:
               476
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 262
               

               Conread position:
               154-870
               

               Cow position:
               chr1:55219846-55220628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               785
               

               Alignm identity:
               460
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               7, 295
               

               Conread position:
               155-815
               

               Cow position:
               chr1:16797435-16798137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               489
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 218
               

               Conread position:
               155-834
               

               Cow position:
               chr1:13579110-13579812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               718
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 451
               

               Conread position:
               157-301
               

               Cow position:
               chr1:93962227-93962382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               118
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               157-382
               

               Cow position:
               chr1:42080110-42079876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               64, 223
               

               Conread position:
               157-410
               

               Cow position:
               chr1:40292483-40292748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               199
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               68, 163
               

               Conread position:
               157-825
               

               Cow position:
               chr1:22480998-22481713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               720
               

               Alignm identity:
               488
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 117
               

               Conread position:
               158-327
               

               Cow position:
               chr1:85152167-85151991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               72, 152
               

               Conread position:
               158-339
               

               Cow position:
               chr1:1383206-1383405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               158-377
               

               Cow position:
               chr1:68481020-68481261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               158-382
               

               Cow position:
               chr1:1028034-1027795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               163
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               158-382
               

               Cow position:
               chr1:8744830-8745076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               158-382
               

               Cow position:
               chr1:9309157-9308911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               158-382
               

               Cow position:
               chr1:33364678-33364432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               158-382
               

               Cow position:
               chr1:33656511-33656265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               158-382
               

               Cow position:
               chr1:39889743-39889500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               176
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               64, 83
               

               Conread position:
               158-382
               

               Cow position:
               chr1:44229882-44229636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               189
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               158-382
               

               Cow position:
               chr1:48036143-48036389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               158-382
               

               Cow position:
               chr1:52941672-52941426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               158-382
               

               Cow position:
               chr1:72806351-72806586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               63, 150
               

               Conread position:
               158-382
               

               Cow position:
               chr1:97206022-97205775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               158-387
               

               Cow position:
               chr1:12465361-12465599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               62, 196
               

               Conread position:
               158-396
               

               Cow position:
               chr1:59019180-59018930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               64, 83
               

               Conread position:
               158-407
               

               Cow position:
               chr1:86574492-86574222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               199
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               61, 12
               

               Conread position:
               158-410
               

               Cow position:
               chr1:21420991-21421271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               199
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               158-411
               

               Cow position:
               chr1:17435735-17436014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               194
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               64, 215
               

               Conread position:
               158-442
               

               Cow position:
               chr1:21079773-21080089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               158-452
               

               Cow position:
               chr1:4207832-4208158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               221
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               158-452
               

               Cow position:
               chr1:81362940-81362630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               69, 29
               

               Conread position:
               158-453
               

               Cow position:
               chr1:34392193-34392521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               229
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               158-453
               

               Cow position:
               chr1:46930287-46930614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               158-453
               

               Cow position:
               chr1:52381111-52380784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               229
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               158-453
               

               Cow position:
               chr1:52507956-52508280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               237
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               64, 310
               

               Conread position:
               158-453
               

               Cow position:
               chr1:84894229-84893902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               158-457
               

               Cow position:
               chr1:31515474-31515777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               181, 50
               

               Conread position:
               158-461
               

               Cow position:
               chr1:66242398-66242719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               64, 50
               

               Conread position:
               158-466
               

               Cow position:
               chr1:9376712-9377043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               64, 169
               

               Conread position:
               158-470
               

               Cow position:
               chr1:56619279-56619624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               242
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               158-501
               

               Cow position:
               chr1:42554664-42554295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               64, 314
               

               Conread position:
               158-508
               

               Cow position:
               chr1:19056535-19056156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               253
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               158-513
               

               Cow position:
               chr1:38545049-38545438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               272
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               65, 95
               

               Conread position:
               158-517
               

               Cow position:
               chr1:30281159-30281550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               267
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               64, 46
               

               Conread position:
               158-520
               

               Cow position:
               chr1:17247996-17248392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               265
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               158-522
               

               Cow position:
               chr1:32913163-32912777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               270
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               61, 30
               

               Conread position:
               158-528
               

               Cow position:
               chr1:17187573-17187978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               269
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               158-528
               

               Cow position:
               chr1:82568075-82567679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               270
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               60, 299
               

               Conread position:
               158-531
               

               Cow position:
               chr1:84449292-84448883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               277
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               158-533
               

               Cow position:
               chr1:19884238-19884644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               266
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               158-537
               

               Cow position:
               chr1:10034194-10033788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               265
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               64, 253
               

               Conread position:
               158-540
               

               Cow position:
               chr1:11665874-11666294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               283
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               60, 343
               

               Conread position:
               158-540
               

               Cow position:
               chr1:52434688-52434272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               292
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               66, 17
               

               Conread position:
               158-551
               

               Cow position:
               chr1:81309028-81308597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               298
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               64, 343
               

               Conread position:
               158-551
               

               Cow position:
               chr1:95457018-95456588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               289
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               64, 215
               

               Conread position:
               158-570
               

               Cow position:
               chr1:89262942-89263395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               300
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               61, 382
               

               Conread position:
               158-578
               

               Cow position:
               chr1:16820273-16819815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               314
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               158-579
               

               Cow position:
               chr1:24581058-24580609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 81
               

               Conread position:
               158-580
               

               Cow position:
               chr1:21257943-21258398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               312
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               65, 40
               

               Conread position:
               158-580
               

               Cow position:
               chr1:39234840-39235302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               158-609
               

               Cow position:
               chr1:18699097-18698602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               327
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               64, 454
               

               Conread position:
               158-627
               

               Cow position:
               chr1:21453242-21453718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               330
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               64, 105
               

               Conread position:
               158-645
               

               Cow position:
               chr1:17009065-17009591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 423
               

               Conread position:
               158-645
               

               Cow position:
               chr1:47078515-47079048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               359
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               64, 11
               

               Conread position:
               158-717
               

               Cow position:
               chr1:54471747-54472359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               614
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 589
               

               Conread position:
               158-739
               

               Cow position:
               chr1:57759576-57758948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 377
               

               Conread position:
               158-747
               

               Cow position:
               chr1:7712441-7711808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               639
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 201
               

               Conread position:
               158-766
               

               Cow position:
               chr1:85806965-85807604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               650
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 199
               

               Conread position:
               158-767
               

               Cow position:
               chr1:58192139-58192798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               663
               

               Alignm identity:
               451
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 381
               

               Conread position:
               158-770
               

               Cow position:
               chr1:51884268-51883617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               658
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 191
               

               Conread position:
               158-771
               

               Cow position:
               chr1:7324704-7324072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               650
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 65
               

               Conread position:
               158-772
               

               Cow position:
               chr1:3969619-3970264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               659
               

               Alignm identity:
               454
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 108
               

               Conread position:
               158-819
               

               Cow position:
               chr1:25052922-25053634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               716
               

               Alignm identity:
               495
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 595
               

               Conread position:
               158-822
               

               Cow position:
               chr1:20527826-20527110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               718
               

               Alignm identity:
               496
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 596
               

               Conread position:
               158-822
               

               Cow position:
               chr1:57506458-57505741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               719
               

               Alignm identity:
               497
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 595
               

               Conread position:
               158-822
               

               Cow position:
               chr1:82091559-82090864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               715
               

               Alignm identity:
               489
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 40
               

               Conread position:
               158-825
               

               Cow position:
               chr1:17032928-17033642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               721
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 382
               

               Conread position:
               158-825
               

               Cow position:
               chr1:77748409-77747693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               721
               

               Alignm identity:
               491
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 16
               

               Conread position:
               158-825
               

               Cow position:
               chr1:79554162-79553442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               722
               

               Alignm identity:
               499
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 368
               

               Conread position:
               158-825
               

               Cow position:
               chr1:82479650-82478932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               720
               

               Alignm identity:
               507
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 586
               

               Conread position:
               158-825
               

               Cow position:
               chr1:86705803-86705098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               712
               

               Alignm identity:
               496
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 43
               

               Conread position:
               158-826
               

               Cow position:
               chr1:28714702-28713985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               723
               

               Alignm identity:
               496
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 102
               

               Conread position:
               158-829
               

               Cow position:
               chr1:46612630-46613348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               725
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 490
               

               Conread position:
               158-833
               

               Cow position:
               chr1:78586791-78587518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               730
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 595
               

               Conread position:
               158-834
               

               Cow position:
               chr1:10726290-10725562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               732
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 597
               

               Conread position:
               158-834
               

               Cow position:
               chr1:13438762-13438059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               714
               

               Alignm identity:
               481
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 65
               

               Conread position:
               158-834
               

               Cow position:
               chr1:18962082-18962791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               719
               

               Alignm identity:
               490
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 252
               

               Conread position:
               158-834
               

               Cow position:
               chr1:29038206-29037480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               729
               

               Alignm identity:
               492
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 29
               

               Conread position:
               158-834
               

               Cow position:
               chr1:31351104-31351826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               729
               

               Alignm identity:
               503
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 332
               

               Conread position:
               158-834
               

               Cow position:
               chr1:35598144-35598866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               730
               

               Alignm identity:
               500
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 594
               

               Conread position:
               158-834
               

               Cow position:
               chr1:40058760-40058043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               723
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 263
               

               Conread position:
               158-834
               

               Cow position:
               chr1:48345835-48345123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               719
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 399
               

               Conread position:
               158-834
               

               Cow position:
               chr1:63044494-63045211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               720
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 412
               

               Conread position:
               158-834
               

               Cow position:
               chr1:63340806-63341534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               731
               

               Alignm identity:
               500
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 16
               

               Conread position:
               158-834
               

               Cow position:
               chr1:67006541-67005819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               731
               

               Alignm identity:
               497
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 108
               

               Conread position:
               158-834
               

               Cow position:
               chr1:69670955-69671683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               731
               

               Alignm identity:
               503
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 488
               

               Conread position:
               158-834
               

               Cow position:
               chr1:69770483-69769757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               730
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 28
               

               Conread position:
               158-834
               

               Cow position:
               chr1:71795199-71794471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               730
               

               Alignm identity:
               497
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 594
               

               Conread position:
               158-834
               

               Cow position:
               chr1:72766371-72767085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               724
               

               Alignm identity:
               505
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 349
               

               Conread position:
               158-834
               

               Cow position:
               chr1:73564811-73565539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               731
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 595
               

               Conread position:
               158-834
               

               Cow position:
               chr1:76878697-76877970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               729
               

               Alignm identity:
               497
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 593
               

               Conread position:
               158-834
               

               Cow position:
               chr1:84447348-84446619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               734
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 16
               

               Conread position:
               158-834
               

               Cow position:
               chr1:89089870-89090598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               731
               

               Alignm identity:
               505
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 508
               

               Conread position:
               158-834
               

               Cow position:
               chr1:89432070-89431341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               732
               

               Alignm identity:
               511
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 328
               

               Conread position:
               158-834
               

               Cow position:
               chr1:89492574-89493274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               727
               

               Alignm identity:
               489
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 40
               

               Conread position:
               158-834
               

               Cow position:
               chr1:91105705-91104980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               727
               

               Alignm identity:
               512
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 591
               

               Conread position:
               158-834
               

               Cow position:
               chr1:91673898-91673170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               730
               

               Alignm identity:
               507
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 594
               

               Conread position:
               158-834
               

               Cow position:
               chr1:91902686-91901957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               732
               

               Alignm identity:
               515
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 561
               

               Conread position:
               159-471
               

               Cow position:
               chr1:60280195-60279858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               240
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               61, 262
               

               Conread position:
               159-579
               

               Cow position:
               chr1:24780816-24781278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               159-692
               

               Cow position:
               chr1:68610112-68610690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               582
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 339
               

               Conread position:
               159-734
               

               Cow position:
               chr1:74536042-74536665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               627
               

               Alignm identity:
               394
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               30, 115
               

               Conread position:
               159-771
               

               Cow position:
               chr1:57743573-57744216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               657
               

               Alignm identity:
               418
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               42, 123
               

               Conread position:
               159-803
               

               Cow position:
               chr1:24595252-24594586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               692
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 217
               

               Conread position:
               159-815
               

               Cow position:
               chr1:56170625-56169919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               483
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 316
               

               Conread position:
               160-340
               

               Cow position:
               chr1:57390956-57391140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               131
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               132, 65
               

               Conread position:
               160-388
               

               Cow position:
               chr1:68869617-68869381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               65, 38
               

               Conread position:
               160-398
               

               Cow position:
               chr1:96298612-96298869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               65, 181
               

               Conread position:
               160-402
               

               Cow position:
               chr1:102290188-102290457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               198
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               62, 142
               

               Conread position:
               160-410
               

               Cow position:
               chr1:44836852-44837130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               160-410
               

               Cow position:
               chr1:74302452-74302724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               188
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               160-411
               

               Cow position:
               chr1:2465268-2465534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               189
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               62, 162
               

               Conread position:
               160-443
               

               Cow position:
               chr1:7197005-7196704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               76, 49
               

               Conread position:
               160-457
               

               Cow position:
               chr1:68252994-68252665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               239
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               160-478
               

               Cow position:
               chr1:98559574-98559228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               250
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               61, 31
               

               Conread position:
               160-527
               

               Cow position:
               chr1:5013133-5013535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               279
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               160-540
               

               Cow position:
               chr1:5162680-5163094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               160-541
               

               Cow position:
               chr1:31351968-31352376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 402
               

               Conread position:
               160-543
               

               Cow position:
               chr1:77103699-77104106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               276
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               62, 264
               

               Conread position:
               160-548
               

               Cow position:
               chr1:2744764-2744350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               284
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               62, 185
               

               Conread position:
               160-553
               

               Cow position:
               chr1:56857489-56857068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               271
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               53, 366
               

               Conread position:
               160-553
               

               Cow position:
               chr1:67013664-67013260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               281
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               51, 98
               

               Conread position:
               160-580
               

               Cow position:
               chr1:34533906-34533442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               313
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               160-644
               

               Cow position:
               chr1:11873985-11874505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               529
               

               Alignm identity:
               353
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               59, 177
               

               Conread position:
               160-644
               

               Cow position:
               chr1:20798486-20797960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               352
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               62, 81
               

               Conread position:
               160-644
               

               Cow position:
               chr1:66684901-66685379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               501
               

               Alignm identity:
               318
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               171, 70
               

               Conread position:
               160-644
               

               Cow position:
               chr1:100887842-100888374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               533
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               160-645
               

               Cow position:
               chr1:2764794-2764249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               547
               

               Alignm identity:
               356
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               65, 29
               

               Conread position:
               160-725
               

               Cow position:
               chr1:16838982-16838364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               621
               

               Alignm identity:
               409
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               62, 177
               

               Conread position:
               160-747
               

               Cow position:
               chr1:61591373-61591981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               619
               

               Alignm identity:
               383
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               78, 65
               

               Conread position:
               160-754
               

               Cow position:
               chr1:98353730-98354377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               649
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 587
               

               Conread position:
               160-764
               

               Cow position:
               chr1:21352661-21353309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               654
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 57
               

               Conread position:
               160-782
               

               Cow position:
               chr1:22012298-22012971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               677
               

               Alignm identity:
               460
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 232
               

               Conread position:
               160-797
               

               Cow position:
               chr1:28677710-28677046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               675
               

               Alignm identity:
               456
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 108
               

               Conread position:
               160-808
               

               Cow position:
               chr1:54390468-54391149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               693
               

               Alignm identity:
               434
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               61, 477
               

               Conread position:
               160-814
               

               Cow position:
               chr1:72803854-72804551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               701
               

               Alignm identity:
               474
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 272
               

               Conread position:
               160-815
               

               Cow position:
               chr1:61221093-61220392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               704
               

               Alignm identity:
               488
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 94
               

               Conread position:
               160-815
               

               Cow position:
               chr1:82864462-82863776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               696
               

               Alignm identity:
               449
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 164
               

               Conread position:
               160-818
               

               Cow position:
               chr1:23099294-23098606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               698
               

               Alignm identity:
               459
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 52
               

               Conread position:
               160-821
               

               Cow position:
               chr1:81925521-81926223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               713
               

               Alignm identity:
               479
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 555
               

               Conread position:
               160-825
               

               Cow position:
               chr1:68601965-68602683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               720
               

               Alignm identity:
               496
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 595
               

               Conread position:
               160-825
               

               Cow position:
               chr1:99865580-99864864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               722
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 22
               

               Conread position:
               160-831
               

               Cow position:
               chr1:52863628-52864332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               715
               

               Alignm identity:
               475
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 125
               

               Conread position:
               160-831
               

               Cow position:
               chr1:58196789-58197505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               731
               

               Alignm identity:
               510
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 279
               

               Conread position:
               160-831
               

               Cow position:
               chr1:99628417-99629109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               714
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 126
               

               Conread position:
               160-834
               

               Cow position:
               chr1:4277313-4276581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               737
               

               Alignm identity:
               464
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               59, 194
               

               Conread position:
               160-834
               

               Cow position:
               chr1:23578152-23578866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               720
               

               Alignm identity:
               455
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               61, 15
               

               Conread position:
               160-834
               

               Cow position:
               chr1:38712378-38711650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               731
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 442
               

               Conread position:
               160-834
               

               Cow position:
               chr1:55780533-55779810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               726
               

               Alignm identity:
               503
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 555
               

               Conread position:
               160-834
               

               Cow position:
               chr1:72987120-72986396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               728
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 117
               

               Conread position:
               160-834
               

               Cow position:
               chr1:89112480-89111770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               715
               

               Alignm identity:
               499
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 117
               

               Conread position:
               161-335
               

               Cow position:
               chr1:44991310-44991501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               141
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               61, 119
               

               Conread position:
               161-377
               

               Cow position:
               chr1:25548696-25548460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               161-387
               

               Cow position:
               chr1:40603688-40603446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               62, 80
               

               Conread position:
               161-548
               

               Cow position:
               chr1:93111700-93112108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               284
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               64, 130
               

               Conread position:
               161-579
               

               Cow position:
               chr1:40964503-40964944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               297
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               61, 151
               

               Conread position:
               161-615
               

               Cow position:
               chr1:52371635-52371138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               336
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               60, 19
               

               Conread position:
               161-709
               

               Cow position:
               chr1:98618327-98617736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               601
               

               Alignm identity:
               397
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               61, 119
               

               Conread position:
               161-764
               

               Cow position:
               chr1:81765745-81766393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               651
               

               Alignm identity:
               402
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               63, 368
               

               Conread position:
               161-822
               

               Cow position:
               chr1:78940607-78941291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               699
               

               Alignm identity:
               430
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               61, 8
               

               Conread position:
               161-823
               

               Cow position:
               chr1:18282638-18281934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               713
               

               Alignm identity:
               477
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 64
               

               Conread position:
               161-824
               

               Cow position:
               chr1:71135554-71134838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               727
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 115
               

               Conread position:
               161-834
               

               Cow position:
               chr1:72087250-72086534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               724
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 62
               

               Conread position:
               162-757
               

               Cow position:
               chr1:30882993-30883638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               652
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 97
               

               Conread position:
               162-824
               

               Cow position:
               chr1:98656308-98656999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               710
               

               Alignm identity:
               470
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 36
               

               Conread position:
               163-397
               

               Cow position:
               chr1:39702162-39701910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               59, 245
               

               Conread position:
               163-410
               

               Cow position:
               chr1:88338101-88337831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               54, 78
               

               Conread position:
               164-540
               

               Cow position:
               chr1:79453102-79453513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               287
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               58, 77
               

               Conread position:
               164-554
               

               Cow position:
               chr1:44127197-44127607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 129
               

               Conread position:
               164-693
               

               Cow position:
               chr1:57957907-57958479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               578
               

               Alignm identity:
               376
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               44, 35
               

               Conread position:
               164-832
               

               Cow position:
               chr1:56438769-56439470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               717
               

               Alignm identity:
               454
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               58, 324
               

               Conread position:
               164-834
               

               Cow position:
               chr1:57678722-57679425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               714
               

               Alignm identity:
               467
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 302
               

               Conread position:
               164-837
               

               Cow position:
               chr1:79255644-79254968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               712
               

               Alignm identity:
               488
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 17
               

               Conread position:
               165-829
               

               Cow position:
               chr1:81343185-81342470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               722
               

               Alignm identity:
               449
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               16, 196
               

               Conread position:
               165-836
               

               Cow position:
               chr1:82370078-82369363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               726
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 374
               

               Conread position:
               166-357
               

               Cow position:
               chr1:96390630-96390835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               166-528
               

               Cow position:
               chr1:92196632-92196239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 308
               

               Conread position:
               166-548
               

               Cow position:
               chr1:64941890-64942297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               286
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               56, 236
               

               Conread position:
               166-573
               

               Cow position:
               chr1:63240344-63239902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               299
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               26, 58
               

               Conread position:
               166-807
               

               Cow position:
               chr1:65726053-65726716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               683
               

               Alignm identity:
               439
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               56, 124
               

               Conread position:
               166-815
               

               Cow position:
               chr1:24655487-24654794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               700
               

               Alignm identity:
               480
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 571
               

               Conread position:
               166-834
               

               Cow position:
               chr1:32960840-32961562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               728
               

               Alignm identity:
               497
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 346
               

               Conread position:
               167-522
               

               Cow position:
               chr1:26838605-26838224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               267
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               51, 145
               

               Conread position:
               167-580
               

               Cow position:
               chr1:38401260-38400849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               288
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               47, 113
               

               Conread position:
               167-807
               

               Cow position:
               chr1:44678283-44677646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               663
               

               Alignm identity:
               419
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               172, 34
               

               Conread position:
               168-724
               

               Cow position:
               chr1:12468142-12468738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               606
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 307
               

               Conread position:
               169-528
               

               Cow position:
               chr1:44083342-44082971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               250
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               53, 107
               

               Conread position:
               169-645
               

               Cow position:
               chr1:76860371-76860889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               327
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               53, 237
               

               Conread position:
               169-831
               

               Cow position:
               chr1:14561554-14562265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               723
               

               Alignm identity:
               464
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               55, 271
               

               Conread position:
               170-811
               

               Cow position:
               chr1:29461981-29461289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               699
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 158
               

               Conread position:
               170-834
               

               Cow position:
               chr1:10010668-10011373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               714
               

               Alignm identity:
               446
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               27, 123
               

               Conread position:
               171-764
               

               Cow position:
               chr1:101130394-101130997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               619
               

               Alignm identity:
               398
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               59, 147
               

               Conread position:
               171-819
               

               Cow position:
               chr1:31414583-31415270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               699
               

               Alignm identity:
               472
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 37
               

               Conread position:
               172-347
               

               Cow position:
               chr1:61728347-61728531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               48, 21
               

               Conread position:
               172-382
               

               Cow position:
               chr1:85163662-85163896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               174-748
               

               Cow position:
               chr1:7406322-7405695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               629
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 579
               

               Conread position:
               175-445
               

               Cow position:
               chr1:8845306-8845004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               206
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               175-467
               

               Cow position:
               chr1:6765452-6765771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               226
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               47, 261
               

               Conread position:
               175-644
               

               Cow position:
               chr1:73968162-73967645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               338
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               175-706
               

               Cow position:
               chr1:19145511-19146101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               591
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               178-516
               

               Cow position:
               chr1:21507444-21507811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               11, 358
               

               Conread position:
               183-627
               

               Cow position:
               chr1:37323650-37324118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 18
               

               Conread position:
               184-831
               

               Cow position:
               chr1:100451039-100451720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               695
               

               Alignm identity:
               465
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 7
               

               Conread position:
               186-382
               

               Cow position:
               chr1:58780036-58779828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               37, 170
               

               Conread position:
               187-678
               

               Cow position:
               chr1:26722026-26722569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               544
               

               Alignm identity:
               355
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               36, 0
               
189-480UCSC Genome Browser

               Conread position:
               
               

               Cow position:
               chr1:9438665-9438978 (view  custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               225
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               51, 43
               
189-808UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:chr1:30079576-30078907 (view  custom track)

               
               
               
Alignm length:671

               
               
               
Alignm identity:458

               
               
               
Alignm E-value:0

               
               
               
Alignm gaps (pig, cow):34, 563
189-831UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:chr1:56632006-56631330 (view  custom track)

               
               
               
Alignm length:680

               
               
               
Alignm identity:469

               
               
               
Alignm E-value:0

               
               
               
Alignm gaps (pig, cow):36, 104

               
               
               Conread position:189-834
               
               
               Cow position:chr1:53397311-53396652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 117

               
               
               Conread position:189-834
               
               
               Cow position:chr1:61204020-61203322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 567

               
               
               Conread position:189-834
               
               
               Cow position:chr1:72139827-72139149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 60

               
               
               Conread position:189-834
               
               
               Cow position:chr1:73063706-73064397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 342

               
               
               Conread position:191-825
               
               
               Cow position:chr1:31391667-31392346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 283

               
               
               Conread position:191-834
               
               
               Cow position:chr1:31399842-31400468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:420
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):112, 34

               
               
               Conread position:193-480
               
               
               Cow position:chr1:29915798-29915486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):32, 239

               
               
               Conread position:193-694
               
               
               Cow position:chr1:31498728-31498199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:379
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):32, 128

               
               
               Conread position:194-737
               
               
               Cow position:chr1:85338480-85337912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 69

               
               
               Conread position:201-834
               
               
               Cow position:chr1:60250802-60251488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 552

               
               
               Conread position:202-522
               
               
               Cow position:chr1:74939346-74939006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):21, 108

               
               
               Conread position:208-385
               
               
               Cow position:chr1:15049411-15049227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:208-522
               
               
               Cow position:chr1:42740305-42739965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:208-551
               
               
               Cow position:chr1:93850910-93850537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:208-819
               
               
               Cow position:chr1:62928078-62927422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 537

               
               
               Conread position:208-825
               
               
               Cow position:chr1:91889798-91890444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 138

               
               
               Conread position:208-831
               
               
               Cow position:chr1:102431134-102431798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 535

               
               
               Conread position:221-513
               
               
               Cow position:chr1:90622637-90622946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:221-623
               
               
               Cow position:chr1:58528866-58528426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:301
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):12, 34

               
               
               Conread position:221-809
               
               
               Cow position:chr1:18136848-18137467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 173

               
               
               Conread position:221-816
               
               
               Cow position:chr1:23057869-23057254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:403
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):64, 152

               
               
               Conread position:221-831
               
               
               Cow position:chr1:57970026-57970649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 68

               
               
               Conread position:224-480
               
               
               Cow position:chr1:56475587-56475313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:224-759
               
               
               Cow position:chr1:70051812-70051254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 171

               
               
               Conread position:225-522
               
               
               Cow position:chr1:16973533-16973843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:227-579
               
               
               Cow position:chr1:86505765-86506138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):61, 194

               
               
               Conread position:229-834
               
               
               Cow position:chr1:56746470-56745822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 238

               
               
               Conread position:233-834
               
               
               Cow position:chr1:70387747-70388377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 325

               
               
               Conread position:234-834
               
               
               Cow position:chr1:92279244-92279853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 154

               
               
               Conread position:235-480
               
               
               Cow position:chr1:99105853-99106104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):104, 60

               
               
               Conread position:235-825
               
               
               Cow position:chr1:3382739-3383367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 508

               
               
               Conread position:235-828
               
               
               Cow position:chr1:41517284-41517883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 96

               
               
               Conread position:235-834
               
               
               Cow position:chr1:21430740-21431364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 209

               
               
               Conread position:236-471
               
               
               Cow position:chr1:19793277-19793024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:243-540
               
               
               Cow position:chr1:92920665-92920989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:243-721
               
               
               Cow position:chr1:24921942-24922470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:358
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):53, 127

               
               
               Conread position:246-831
               
               
               Cow position:chr1:46839344-46838736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 192

               
               
               Conread position:248-522
               
               
               Cow position:chr1:52510559-52510845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):91, 261

               
               
               Conread position:248-804
               
               
               Cow position:chr1:3668574-3669157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:368
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):39, 9

               
               
               Conread position:248-831
               
               
               Cow position:chr1:55145604-55144986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:250-834
               
               
               Cow position:chr1:61339755-61340382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 493

               
               
               Conread position:253-615
               
               
               Cow position:chr1:52379855-52379459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 371

               
               
               Conread position:253-714
               
               
               Cow position:chr1:89793515-89793011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:335
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):31, 484

               
               
               Conread position:254-834
               
               
               Cow position:chr1:18087990-18087367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 489

               
               
               Conread position:256-645
               
               
               Cow position:chr1:51444795-51444372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 370

               
               
               Conread position:260-818
               
               
               Cow position:chr1:82518583-82519168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 22

               
               
               Conread position:261-834
               
               
               Cow position:chr1:53311777-53311169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 269

               
               
               Conread position:266-787
               
               
               Cow position:chr1:43567964-43568522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:367
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):18, 468

               
               
               Conread position:269-629
               
               
               Cow position:chr1:39479953-39480336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:267
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):70, 147

               
               
               Conread position:269-834
               
               
               Cow position:chr1:22727839-22727231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 436

               
               
               Conread position:270-835
               
               
               Cow position:chr1:31814552-31813957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:389
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):19, 248

               
               
               Conread position:277-580
               
               
               Cow position:chr1:99581926-99582256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):62, 247

               
               
               Conread position:277-767
               
               
               Cow position:chr1:37541780-37542284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 144

               
               
               Conread position:277-834
               
               
               Cow position:chr1:68818381-68818964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 446

               
               
               Conread position:282-639
               
               
               Cow position:chr1:72864470-72864091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 205

               
               
               Conread position:283-779
               
               
               Cow position:chr1:38279212-38279746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 41

               
               
               Conread position:284-815
               
               
               Cow position:chr1:73384980-73384428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:284-832
               
               
               Cow position:chr1:71676564-71677115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:367
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):55, 187

               
               
               Conread position:288-834
               
               
               Cow position:chr1:86592786-86593366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 21

               
               
               Conread position:288-834
               
               
               Cow position:chr1:100536667-100536101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 323

               
               
               Conread position:290-457
               
               
               Cow position:chr1:53424436-53424264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 27

               
               
               Conread position:290-527
               
               
               Cow position:chr1:73870371-73870115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:290-528
               
               
               Cow position:chr1:29656706-29656448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:290-624
               
               
               Cow position:chr1:30033783-30033436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):49, 127

               
               
               Conread position:290-642
               
               
               Cow position:chr1:70534947-70535330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:270
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:290-717
               
               
               Cow position:chr1:54477301-54476856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 31

               
               
               Conread position:290-765
               
               
               Cow position:chr1:30035131-30034637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:329
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):51, 188

               
               
               Conread position:290-819
               
               
               Cow position:chr1:11199114-11199678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 441

               
               
               Conread position:290-819
               
               
               Cow position:chr1:56726674-56726122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 166

               
               
               Conread position:290-824
               
               
               Cow position:chr1:79113928-79113383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 430

               
               
               Conread position:290-825
               
               
               Cow position:chr1:40509741-40510310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 333

               
               
               Conread position:290-829
               
               
               Cow position:chr1:11771264-11771846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 108

               
               
               Conread position:290-831
               
               
               Cow position:chr1:21678308-21677742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 132

               
               
               Conread position:290-834
               
               
               Cow position:chr1:99690278-99689702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:366
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):49, 441

               
               
               Conread position:290-834
               
               
               Cow position:chr1:101523886-101524449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 54

               
               
               Conread position:291-685
               
               
               Cow position:chr1:70037730-70038155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:287
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):48, 131

               
               
               Conread position:291-692
               
               
               Cow position:chr1:11288871-11289310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:297
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):48, 78

               
               
               Conread position:291-834
               
               
               Cow position:chr1:16573409-16573970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 261

               
               
               Conread position:291-834
               
               
               Cow position:chr1:21133616-21134169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 102

               
               
               Conread position:292-525
               
               
               Cow position:chr1:61662023-61662271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 169

               
               
               Conread position:292-612
               
               
               Cow position:chr1:73440481-73440131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:292-645
               
               
               Cow position:chr1:99118999-99118616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:256
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:292-778
               
               
               Cow position:chr1:19775577-19776097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:292-795
               
               
               Cow position:chr1:28521166-28520628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 443

               
               
               Conread position:292-834
               
               
               Cow position:chr1:85630851-85630274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 443

               
               
               Conread position:293-825
               
               
               Cow position:chr1:92553273-92553811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:352
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:298-834
               
               
               Cow position:chr1:22529302-22529860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 248

               
               
               Conread position:300-815
               
               
               Cow position:chr1:67974715-67975240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:343
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):89, 47

               
               
               Conread position:311-777
               
               
               Cow position:chr1:73404277-73403784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:323
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 311

               
               
               Conread position:311-785
               
               
               Cow position:chr1:79590347-79589847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 178

               
               
               Conread position:311-834
               
               
               Cow position:chr1:21090961-21090388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 438

               
               
               Conread position:318-829
               
               
               Cow position:chr1:22837514-22838034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:329
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):24, 143

               
               
               Conread position:321-834
               
               
               Cow position:chr1:81302600-81302053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 402

               
               
               Conread position:326-834
               
               
               Cow position:chr1:31190950-31191476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 28

               
               
               Conread position:334-834
               
               
               Cow position:chr1:8527949-8528479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:345
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):55, 10

               
               
               Conread position:336-777
               
               
               Cow position:chr1:45021693-45021231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:311
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):45, 182

               
               
               Conread position:336-825
               
               
               Cow position:chr1:47119424-47118904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 395

               
               
               Conread position:336-825
               
               
               Cow position:chr1:97285194-97285715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 101

               
               
               Conread position:336-834
               
               
               Cow position:chr1:48250184-48249653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 397

               
               
               Conread position:340-825
               
               
               Cow position:chr1:77867020-77866523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 226

               
               
               Conread position:340-833
               
               
               Cow position:chr1:61563497-61562976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 100

               
               
               Conread position:341-644
               
               
               Cow position:chr1:29410747-29411077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):48, 185

               
               
               Conread position:341-824
               
               
               Cow position:chr1:63036083-63035567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 121

               
               
               Conread position:341-834
               
               
               Cow position:chr1:23040531-23040034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:345-644
               
               
               Cow position:chr1:49132715-49133040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:345-660
               
               
               Cow position:chr1:12871997-12872339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):44, 283

               
               
               Conread position:345-815
               
               
               Cow position:chr1:30305830-30306332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:332
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):44, 301

               
               
               Conread position:352-825
               
               
               Cow position:chr1:8557137-8556633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 379

               
               
               Conread position:353-825
               
               
               Cow position:chr1:21459122-21458640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 37

               
               
               Conread position:353-834
               
               
               Cow position:chr1:52171347-52171871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:354-825
               
               
               Cow position:chr1:12803532-12803030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:341
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):30, 72

               
               
               Conread position:355-787
               
               
               Cow position:chr1:30440602-30440154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:308
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 98

               
               
               Conread position:355-823
               
               
               Cow position:chr1:21132434-21132914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:317
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):21, 9

               
               
               Conread position:359-713
               
               
               Cow position:chr1:21785920-21785546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:258
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):56, 320

               
               
               Conread position:362-645
               
               
               Cow position:chr1:31707923-31707614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:374-693
               
               
               Cow position:chr1:54295724-54296065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):70, 39

               
               
               Conread position:374-834
               
               
               Cow position:chr1:40578345-40577877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):273, 331

               
               
               Conread position:374-834
               
               
               Cow position:chr1:81357232-81357705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 216

               
               
               Conread position:377-782
               
               
               Cow position:chr1:88984037-88984458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 36

               
               
               Conread position:377-808
               
               
               Cow position:chr1:88389743-88389299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):39, 148

               
               
               Conread position:380-834
               
               
               Cow position:chr1:34684900-34684436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 305

               
               
               Conread position:384-834
               
               
               Cow position:chr1:8745911-8745436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 341

               
               
               Conread position:386-767
               
               
               Cow position:chr1:52068039-52067632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:280
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):26, 340

               
               
               Conread position:386-834
               
               
               Cow position:chr1:29365818-29365346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 338

               
               
               Conread position:386-834
               
               
               Cow position:chr1:60342467-60341989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 348

               
               
               Conread position:388-834
               
               
               Cow position:chr1:62732214-62731741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:392-816
               
               
               Cow position:chr1:90605469-90605920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 337

               
               
               Conread position:395-832
               
               
               Cow position:chr1:23969389-23969868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 103

               
               
               Conread position:414-834
               
               
               Cow position:chr1:9377099-9377551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 36

               
               
               Conread position:415-834
               
               
               Cow position:chr1:28413845-28414273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 43

               
               
               Conread position:415-834
               
               
               Cow position:chr1:51393462-51393031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 144

               
               
               Conread position:421-645
               
               
               Cow position:chr1:16337859-16338097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:421-692
               
               
               Cow position:chr1:55493691-55493985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:421-822
               
               
               Cow position:chr1:33039659-33040082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 301

               
               
               Conread position:421-825
               
               
               Cow position:chr1:19162341-19161916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 300

               
               
               Conread position:421-829
               
               
               Cow position:chr1:31362744-31363153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:290
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):9, 44

               
               
               Conread position:421-831
               
               
               Cow position:chr1:40920511-40920082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):8, 149

               
               
               Conread position:421-834
               
               
               Cow position:chr1:9262732-9263167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr1:18486804-18487239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr1:30103204-30103639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr1:31106020-31106455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:423-834
               
               
               Cow position:chr1:76701301-76701704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 77

               
               
               Conread position:426-770
               
               
               Cow position:chr1:88266775-88267132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):55, 42

               
               
               Conread position:427-627
               
               
               Cow position:chr1:12465794-12466014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:427-834
               
               
               Cow position:chr1:100709437-100709010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:284
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):49, 296

               
               
               Conread position:431-834
               
               
               Cow position:chr1:38478667-38478243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 292

               
               
               Conread position:434-834
               
               
               Cow position:chr1:86326520-86326951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 10

               
               
               Conread position:438-807
               
               
               Cow position:chr1:96095475-96095085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:439-824
               
               
               Cow position:chr1:68252320-68251934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 222

               
               
               Conread position:439-825
               
               
               Cow position:chr1:31238881-31239281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 68

               
               
               Conread position:441-828
               
               
               Cow position:chr1:81328886-81328477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 102

               
               
               Conread position:451-830
               
               
               Cow position:chr1:22287872-22287484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:269
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):73, 34

               
               
               Conread position:455-835
               
               
               Cow position:chr1:33442831-33443224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 67

               
               
               Conread position:459-834
               
               
               Cow position:chr1:70381217-70381609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 23

               
               
               Conread position:471-819
               
               
               Cow position:chr1:101010595-101010962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):54, 152

               
               
               Conread position:471-834
               
               
               Cow position:chr1:39889447-39889077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 63

               
               
               Conread position:489-825
               
               
               Cow position:chr1:26141905-26142261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:251
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):36, 228

               
               
               Conread position:489-825
               
               
               Cow position:chr1:76852717-76852363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):36, 88

               
               
               Conread position:489-831
               
               
               Cow position:chr1:29901893-29902243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 16

               
               
               Conread position:490-786
               
               
               Cow position:chr1:90865337-90865027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 229

               
               
               Conread position:490-819
               
               
               Cow position:chr1:57635517-57635867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 197

               
               
               Conread position:490-834
               
               
               Cow position:chr1:12058219-12058582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 231

               
               
               Conread position:491-729
               
               
               Cow position:chr1:475477-475221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):33, 221

               
               
               Conread position:491-736
               
               
               Cow position:chr1:2006395-2006655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):31, 223

               
               
               Conread position:491-815
               
               
               Cow position:chr1:57526576-57526233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr1:4208613-4208975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 101

               
               
               Conread position:491-834
               
               
               Cow position:chr1:7195919-7196281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr1:17436375-17436736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 144

               
               
               Conread position:491-834
               
               
               Cow position:chr1:59202963-59203325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr1:99107927-99108288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 225

               
               
               Conread position:492-834
               
               
               Cow position:chr1:70069977-70069603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:267
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):33, 239

               
               
               Conread position:493-825
               
               
               Cow position:chr1:100510046-100509698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:498-834
               
               
               Cow position:chr1:20648733-20648378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 221

               
               
               Conread position:505-815
               
               
               Cow position:chr1:25780561-25780246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):10, 24

               
               
               Conread position:505-822
               
               
               Cow position:chr1:89767330-89767646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:505-834
               
               
               Cow position:chr1:58172013-58171678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:506-765
               
               
               Cow position:chr1:17765653-17765386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:506-825
               
               
               Cow position:chr1:26607291-26607618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:508-833
               
               
               Cow position:chr1:58088272-58088605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 116

               
               
               Conread position:514-788
               
               
               Cow position:chr1:1023533-1023815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:514-834
               
               
               Cow position:chr1:87722422-87722749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:521-804
               
               
               Cow position:chr1:42739665-42739375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:521-824
               
               
               Cow position:chr1:58169181-58169470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:521-834
               
               
               Cow position:chr1:32564673-32564989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:522-809
               
               
               Cow position:chr1:27112902-27113190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 176

               
               
               Conread position:522-819
               
               
               Cow position:chr1:43511132-43511434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 13

               
               
               Conread position:522-821
               
               
               Cow position:chr1:3742989-3743294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:530-825
               
               
               Cow position:chr1:11018685-11018391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:532-834
               
               
               Cow position:chr1:10033759-10033448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):41, 16

               
               
               Conread position:538-834
               
               
               Cow position:chr1:67001454-67001148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):14, 172

               
               
               Conread position:538-834
               
               
               Cow position:chr1:92035342-92035036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):14, 172

               
               
               Conread position:539-825
               
               
               Cow position:chr1:11666320-11666615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 170

               
               
               Conread position:545-834
               
               
               Cow position:chr1:5492362-5492076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):28, 153

               
               
               Conread position:545-834
               
               
               Cow position:chr1:68950447-68950146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 170

               
               
               Conread position:559-837
               
               
               Cow position:chr1:33392296-33392002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):28, 134

               
               
               Conread position:569-823
               
               
               Cow position:chr1:39111893-39111635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):23, 17

               
               
               Conread position:569-825
               
               
               Cow position:chr1:32099884-32100145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-828
               
               
               Cow position:chr1:93112159-93112428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:571-804
               
               
               Cow position:chr1:10024883-10025116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 53

               
               
               Conread position:571-822
               
               
               Cow position:chr1:72183672-72183927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):77, 131

               
               
               Conread position:577-825
               
               
               Cow position:chr1:29948623-29948872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 126

               
               
               Conread position:579-819
               
               
               Cow position:chr1:67289608-67289364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):69, 50

               
               
               Conread position:579-825
               
               
               Cow position:chr1:40532874-40533123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):58, 122

               
               
               Conread position:579-834
               
               
               Cow position:chr1:86506422-86506687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):26, 113

               
               
               Conread position:583-834
               
               
               Cow position:chr1:44128190-44128440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 94

               
               
               Conread position:585-818
               
               
               Cow position:chr1:31597400-31597163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:180
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):52, 116

               
               
               Conread position:585-833
               
               
               Cow position:chr1:76849592-76849841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):61, 8

               
               
               Conread position:591-799
               
               
               Cow position:chr1:84443150-84442937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):52, 114

               
               
               Conread position:591-819
               
               
               Cow position:chr1:83108424-83108656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):57, 116

               
               
               Conread position:591-824
               
               
               Cow position:chr1:16118660-16118424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):46, 79

               
               
               Conread position:591-825
               
               
               Cow position:chr1:79453780-79454019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):55, 116

               
               
               Conread position:591-829
               
               
               Cow position:chr1:40965219-40965464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):46, 118

               
               
               Conread position:591-834
               
               
               Cow position:chr1:14361285-14361533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-834
               
               
               Cow position:chr1:22223210-22222962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-834
               
               
               Cow position:chr1:33899442-33899205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:591-834
               
               
               Cow position:chr1:79334992-79335241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):55, 116

               
               
               Conread position:592-786
               
               
               Cow position:chr1:55318342-55318538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):54, 16

               
               
               Conread position:592-824
               
               
               Cow position:chr1:70864223-70863987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):45, 78

               
               
               Conread position:592-834
               
               
               Cow position:chr1:24203477-24203710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:592-834
               
               
               Cow position:chr1:81305948-81305715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:593-825
               
               
               Cow position:chr1:7300207-7299971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):54, 36

               
               
               Conread position:593-835
               
               
               Cow position:chr1:31724420-31724661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):49, 5

               
               
               Conread position:594-813
               
               
               Cow position:chr1:102783757-102783535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):51, 107

               
               
               Conread position:594-831
               
               
               Cow position:chr1:17949662-17949423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:596-782
               
               
               Cow position:chr1:81860856-81861047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):50, 109

               
               
               Conread position:602-825
               
               
               Cow position:chr1:73434149-73434378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):11, 104

               
               
               Conread position:609-788
               
               
               Cow position:chr1:35711834-35711651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:609-793
               
               
               Cow position:chr1:100606868-100606679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 60

               
               
               Conread position:609-818
               
               
               Cow position:chr1:72599285-72599071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):37, 94

               
               
               Conread position:609-819
               
               
               Cow position:chr1:59592652-59592866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):39, 76

               
               
               Conread position:609-834
               
               
               Cow position:chr1:16973959-16974186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:609-834
               
               
               Cow position:chr1:57397177-57397409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:609-834
               
               
               Cow position:chr1:100912311-100912081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:616-796
               
               
               Cow position:chr1:80902418-80902602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):30, 88

               
               
               Conread position:619-834
               
               
               Cow position:chr1:4336379-4336166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):29, 44

               
               
               Conread position:621-834
               
               
               Cow position:chr1:39546940-39546720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):26, 81

               
               
               Conread position:623-834
               
               
               Cow position:chr1:99015870-99016085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):24, 48

               
               
               Conread position:624-832
               
               
               Cow position:chr1:61536843-61537055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 38

               
               
               Conread position:645-795
               
               
               Cow position:chr1:67949545-67949396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:664-776
               
               
               Cow position:chr1:18415340-18415447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:666-811
               
               
               Cow position:chr1:47162888-47162745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:666-813
               
               
               Cow position:chr1:52335623-52335768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:666-825
               
               
               Cow position:chr1:34533154-34532996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:666-831
               
               
               Cow position:chr1:23658530-23658367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):130, 37

               
               
               Conread position:666-834
               
               
               Cow position:chr1:30037806-30037638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):94, 30

               
               
               Conread position:666-834
               
               
               Cow position:chr1:99989612-99989444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):77, 33

               
               
               Conread position:666-837
               
               
               Cow position:chr1:67823513-67823344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:667-887
               
               
               Cow position:chr1:17237380-17237598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):159, 11

               
               
               Conread position:669-834
               
               
               Cow position:chr1:37677056-37677218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:670-834
               
               
               Cow position:chr1:70416771-70416931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):83, 26

               
               
               Conread position:671-795
               
               
               Cow position:chr1:49267421-49267298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:671-808
               
               
               Cow position:chr1:77557675-77557811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:674-825
               
               
               Cow position:chr1:6165059-6164910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:680-834
               
               
               Cow position:chr1:83170732-83170578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:682-834
               
               
               Cow position:chr1:76860968-76861118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:692-834
               
               
               Cow position:chr1:41779984-41780126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:694-833
               
               
               Cow position:chr1:72308609-72308747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:696-834
               
               
               Cow position:chr1:29704570-29704706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr1:6212315-6212179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:705-835
               
               
               Cow position:chr1:88676551-88676422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:708-834
               
               
               Cow position:chr1:29608035-29608161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:712-825
               
               
               Cow position:chr1:11289545-11289658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:716-824
               
               
               Cow position:chr1:55328361-55328471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:718-825
               
               
               Cow position:chr1:53422951-53422845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:1-451
               
               
               Cow position:chr10:15292814-15292332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:310
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):74, 186

               
               
               Conread position:45-725
               
               
               Cow position:chr10:31734502-31733753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:758
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:71-753
               
               
               Cow position:chr10:14982180-14982915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:752
               
               
               Alignm identity:493
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):16, 26

               
               
               Conread position:73-220
               
               
               Cow position:chr10:44732603-44732743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:73-328
               
               
               Cow position:chr10:39970660-39970945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-361
               
               
               Cow position:chr10:51695882-51695570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 34

               
               
               Conread position:73-382
               
               
               Cow position:chr10:26601769-26601425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 31

               
               
               Conread position:73-387
               
               
               Cow position:chr10:39939853-39940205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:73-393
               
               
               Cow position:chr10:57458211-57457863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 40

               
               
               Conread position:73-443
               
               
               Cow position:chr10:24743757-24743342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):20, 40

               
               
               Conread position:73-451
               
               
               Cow position:chr10:49432894-49432476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:301
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:73-453
               
               
               Cow position:chr10:14971762-14971333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:299
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:73-459
               
               
               Cow position:chr10:22617261-22617664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:288
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:73-460
               
               
               Cow position:chr10:24022805-24023230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:297
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):32, 40

               
               
               Conread position:73-522
               
               
               Cow position:chr10:4640563-4641063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:345
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-529
               
               
               Cow position:chr10:6542253-6541759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:322
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:73-540
               
               
               Cow position:chr10:20871304-20870798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 28

               
               
               Conread position:73-540
               
               
               Cow position:chr10:31670047-31669538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:345
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):14, 19

               
               
               Conread position:73-541
               
               
               Cow position:chr10:21889093-21889615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:353
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:73-542
               
               
               Cow position:chr10:2856577-2856088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:73-548
               
               
               Cow position:chr10:7737270-7736756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 34

               
               
               Conread position:73-580
               
               
               Cow position:chr10:23648501-23649067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-611
               
               
               Cow position:chr10:28236284-28235695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:73-692
               
               
               Cow position:chr10:10173679-10173006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 38

               
               
               Conread position:73-718
               
               
               Cow position:chr10:20388039-20388724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-754
               
               
               Cow position:chr10:64347748-64347014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 22

               
               
               Conread position:73-819
               
               
               Cow position:chr10:55096850-55096041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:815
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-824
               
               
               Cow position:chr10:58937863-58938666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:813
               
               
               Alignm identity:543
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:73-834
               
               
               Cow position:chr10:1376701-1377530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:834
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr10:2466151-2466928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:802
               
               
               Alignm identity:540
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 129

               
               
               Conread position:73-834
               
               
               Cow position:chr10:3506361-3507177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:823
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr10:8460000-8459190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:817
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-834
               
               
               Cow position:chr10:10148110-10147322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:819
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 132

               
               
               Conread position:73-834
               
               
               Cow position:chr10:20735187-20734419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 18

               
               
               Conread position:73-834
               
               
               Cow position:chr10:22381500-22380680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:824
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 37

               
               
               Conread position:73-834
               
               
               Cow position:chr10:36878662-36879493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:834
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr10:64304246-64305063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:825
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:74-425
               
               
               Cow position:chr10:11221197-11220825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:250
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):106, 34

               
               
               Conread position:74-509
               
               
               Cow position:chr10:43288594-43289071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:326
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):75, 33

               
               
               Conread position:74-540
               
               
               Cow position:chr10:50110421-50110935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 17

               
               
               Conread position:74-714
               
               
               Cow position:chr10:76873-76178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 92

               
               
               Conread position:75-510
               
               
               Cow position:chr10:66875608-66876069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:311
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):15, 39

               
               
               Conread position:76-223
               
               
               Cow position:chr10:48370113-48370260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 28

               
               
               Conread position:77-284
               
               
               Cow position:chr10:1723404-1723182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:77-480
               
               
               Cow position:chr10:6242963-6243380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 27

               
               
               Conread position:77-522
               
               
               Cow position:chr10:53157641-53158127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:336
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):72, 27

               
               
               Conread position:77-549
               
               
               Cow position:chr10:29069586-29069065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 36

               
               
               Conread position:92-834
               
               
               Cow position:chr10:8682381-8681587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:798
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 67

               
               
               Conread position:93-834
               
               
               Cow position:chr10:30689740-30688962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 232

               
               
               Conread position:96-332
               
               
               Cow position:chr10:39139417-39139162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):44, 26

               
               
               Conread position:102-316
               
               
               Cow position:chr10:31779813-31780041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:123-377
               
               
               Cow position:chr10:53908296-53908572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:123-454
               
               
               Cow position:chr10:32174154-32173792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:261
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):21, 116

               
               
               Conread position:123-645
               
               
               Cow position:chr10:3984835-3984269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 30

               
               
               Conread position:123-819
               
               
               Cow position:chr10:16646577-16647331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:760
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 463

               
               
               Conread position:128-320
               
               
               Cow position:chr10:24293233-24293439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:133-412
               
               
               Cow position:chr10:53075416-53075113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):90, 28

               
               
               Conread position:133-824
               
               
               Cow position:chr10:31527413-31526685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 68

               
               
               Conread position:139-452
               
               
               Cow position:chr10:9517332-9516985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:139-532
               
               
               Cow position:chr10:15912166-15911760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):20, 10

               
               
               Conread position:139-815
               
               
               Cow position:chr10:23913143-23913869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:533
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 255

               
               
               Conread position:141-446
               
               
               Cow position:chr10:17805694-17805368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 15

               
               
               Conread position:142-392
               
               
               Cow position:chr10:2848366-2848107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:142-410
               
               
               Cow position:chr10:63313137-63312846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 14

               
               
               Conread position:142-457
               
               
               Cow position:chr10:45750660-45750332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:142-498
               
               
               Cow position:chr10:28835641-28835243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:142-771
               
               
               Cow position:chr10:11623021-11623696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:143-337
               
               
               Cow position:chr10:55046656-55046451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:143-372
               
               
               Cow position:chr10:12956240-12955988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-373
               
               
               Cow position:chr10:40220962-40220711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-373
               
               
               Cow position:chr10:50087013-50087265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:143-373
               
               
               Cow position:chr10:52278119-52277872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):78, 16

               
               
               Conread position:143-376
               
               
               Cow position:chr10:33933618-33933872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-381
               
               
               Cow position:chr10:24973962-24974204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr10:18106051-18106311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr10:23472024-23472283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr10:23877234-23877494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr10:24222781-24223035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr10:29933130-29933382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr10:52738434-52738694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr10:56109578-56109318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr10:62202695-62202955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-387
               
               
               Cow position:chr10:23533068-23533327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):62, 13

               
               
               Conread position:143-452
               
               
               Cow position:chr10:21461435-21461095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-452
               
               
               Cow position:chr10:48098003-48097668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-453
               
               
               Cow position:chr10:17123734-17124075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr10:61323401-61323060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-467
               
               
               Cow position:chr10:10082376-10082731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-467
               
               
               Cow position:chr10:14963858-14964217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:143-467
               
               
               Cow position:chr10:60232733-60232393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:143-480
               
               
               Cow position:chr10:8093929-8094293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-506
               
               
               Cow position:chr10:57143168-57143556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-522
               
               
               Cow position:chr10:15754062-15753653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:284
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-522
               
               
               Cow position:chr10:38273828-38273420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:275
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-528
               
               
               Cow position:chr10:63881948-63881525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:290
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-534
               
               
               Cow position:chr10:31182475-31182886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-536
               
               
               Cow position:chr10:28930398-28930824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:288
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-548
               
               
               Cow position:chr10:48741774-48742207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:143-583
               
               
               Cow position:chr10:12653909-12653426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:330
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-587
               
               
               Cow position:chr10:65810463-65810951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:327
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-603
               
               
               Cow position:chr10:14904926-14904413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:341
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-616
               
               
               Cow position:chr10:52028212-52027700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:348
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-645
               
               
               Cow position:chr10:14422594-14422045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-648
               
               
               Cow position:chr10:37908443-37908996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:367
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-683
               
               
               Cow position:chr10:44113594-44114187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-692
               
               
               Cow position:chr10:32582173-32581570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-725
               
               
               Cow position:chr10:35353370-35353996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 6

               
               
               Conread position:143-741
               
               
               Cow position:chr10:45769434-45768824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-757
               
               
               Cow position:chr10:24308503-24309152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:143-767
               
               
               Cow position:chr10:41560770-41561446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-775
               
               
               Cow position:chr10:49504639-49503955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-795
               
               
               Cow position:chr10:63955200-63954507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 332

               
               
               Conread position:143-796
               
               
               Cow position:chr10:11001004-11000370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:450
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-796
               
               
               Cow position:chr10:42214580-42213875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-799
               
               
               Cow position:chr10:29174928-29174222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-819
               
               
               Cow position:chr10:29628564-29629290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-821
               
               
               Cow position:chr10:11110954-11110260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 15

               
               
               Conread position:143-822
               
               
               Cow position:chr10:47084733-47084009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-823
               
               
               Cow position:chr10:42745289-42744569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr10:21449494-21450227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr10:26291781-26292515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:143-829
               
               
               Cow position:chr10:10585826-10585099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:143-831
               
               
               Cow position:chr10:47773127-47772399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:535
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr10:1720147-1720901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:760
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr10:6221951-6221208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr10:9681468-9682205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr10:21081534-21080800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:535
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr10:22105184-22104443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr10:22250936-22250194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr10:32704468-32703725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 18

               
               
               Conread position:143-834
               
               
               Cow position:chr10:33555958-33556694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr10:37041701-37040968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr10:37138598-37139341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr10:37773585-37772842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr10:38941826-38941082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:533
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr10:39211478-39210736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr10:39441869-39441133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-834
               
               
               Cow position:chr10:39875738-39876484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:757
               
               
               Alignm identity:543
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr10:40376694-40375970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr10:41161103-41160378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr10:41570806-41570067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr10:45648561-45647819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr10:46195187-46194442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:755
               
               
               Alignm identity:538
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr10:48240851-48241594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr10:52825923-52826664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:525
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr10:62405090-62405808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:144-372
               
               
               Cow position:chr10:10753732-10753977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 9

               
               
               Conread position:144-446
               
               
               Cow position:chr10:58265167-58265482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):75, 12

               
               
               Conread position:144-549
               
               
               Cow position:chr10:36231378-36230964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 16

               
               
               Conread position:144-645
               
               
               Cow position:chr10:10686977-10686447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:339
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:144-834
               
               
               Cow position:chr10:35823638-35824380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:145-355
               
               
               Cow position:chr10:5150726-5150500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-387
               
               
               Cow position:chr10:35246376-35246640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-410
               
               
               Cow position:chr10:51836773-51837064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-515
               
               
               Cow position:chr10:15867639-15867237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:145-528
               
               
               Cow position:chr10:38013747-38013333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 238

               
               
               Conread position:145-551
               
               
               Cow position:chr10:42387751-42388176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):6, 17

               
               
               Conread position:145-562
               
               
               Cow position:chr10:1415629-1415171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-645
               
               
               Cow position:chr10:45484306-45484847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-693
               
               
               Cow position:chr10:2516736-2516142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-714
               
               
               Cow position:chr10:48384533-48385142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-719
               
               
               Cow position:chr10:2736719-2736093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-736
               
               
               Cow position:chr10:326793-326156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 11

               
               
               Conread position:145-746
               
               
               Cow position:chr10:51863661-51864271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-761
               
               
               Cow position:chr10:54960047-54960693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 54

               
               
               Conread position:145-818
               
               
               Cow position:chr10:42636366-42635696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:145-834
               
               
               Cow position:chr10:325059-325795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 11

               
               
               Conread position:145-834
               
               
               Cow position:chr10:34664078-34664805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 11

               
               
               Conread position:145-834
               
               
               Cow position:chr10:39037350-39038088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 8

               
               
               Conread position:146-337
               
               
               Cow position:chr10:20506373-20506162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:146-337
               
               
               Cow position:chr10:54948976-54949168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):13, 160

               
               
               Conread position:146-458
               
               
               Cow position:chr10:60936351-60936011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):78, 35

               
               
               Conread position:146-468
               
               
               Cow position:chr10:31534141-31533792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:146-504
               
               
               Cow position:chr10:6253105-6253488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 267

               
               
               Conread position:146-557
               
               
               Cow position:chr10:22906419-22906863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):5, 15

               
               
               Conread position:146-623
               
               
               Cow position:chr10:53828287-53827760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:146-805
               
               
               Cow position:chr10:2612774-2612076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 13

               
               
               Conread position:146-822
               
               
               Cow position:chr10:19894701-19894025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 260

               
               
               Conread position:147-284
               
               
               Cow position:chr10:7147798-7147945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 125

               
               
               Conread position:147-290
               
               
               Cow position:chr10:29569845-29569999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-337
               
               
               Cow position:chr10:16929916-16929707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-337
               
               
               Cow position:chr10:63776781-63776572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-378
               
               
               Cow position:chr10:37459303-37459541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):12, 139

               
               
               Conread position:147-382
               
               
               Cow position:chr10:10859842-10860100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-398
               
               
               Cow position:chr10:48256036-48256307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):12, 23

               
               
               Conread position:147-399
               
               
               Cow position:chr10:22471707-22471439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):12, 149

               
               
               Conread position:147-453
               
               
               Cow position:chr10:38843826-38843489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):12, 235

               
               
               Conread position:147-480
               
               
               Cow position:chr10:63626832-63626480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 103

               
               
               Conread position:147-520
               
               
               Cow position:chr10:9798814-9799221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:147-540
               
               
               Cow position:chr10:39080111-39079683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 129

               
               
               Conread position:147-580
               
               
               Cow position:chr10:54072086-54072546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 166

               
               
               Conread position:147-616
               
               
               Cow position:chr10:25005960-25005452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-635
               
               
               Cow position:chr10:18885567-18886081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:350
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):12, 162

               
               
               Conread position:147-644
               
               
               Cow position:chr10:6539481-6538942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 125

               
               
               Conread position:147-653
               
               
               Cow position:chr10:56834665-56834119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 289

               
               
               Conread position:147-719
               
               
               Cow position:chr10:185755-185126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:416
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):12, 134

               
               
               Conread position:147-729
               
               
               Cow position:chr10:66495700-66496334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 12

               
               
               Conread position:147-739
               
               
               Cow position:chr10:44765383-44764746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 105

               
               
               Conread position:147-763
               
               
               Cow position:chr10:68978945-68978304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:432
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):12, 139

               
               
               Conread position:147-767
               
               
               Cow position:chr10:23935429-23934791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 34

               
               
               Conread position:147-796
               
               
               Cow position:chr10:46226524-46225834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 283

               
               
               Conread position:147-825
               
               
               Cow position:chr10:8293834-8293102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 574

               
               
               Conread position:147-825
               
               
               Cow position:chr10:22646674-22646000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:458
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):12, 52

               
               
               Conread position:147-825
               
               
               Cow position:chr10:65790598-65791333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 607

               
               
               Conread position:147-834
               
               
               Cow position:chr10:1381189-1380463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 134

               
               
               Conread position:147-834
               
               
               Cow position:chr10:14332138-14332878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 608

               
               
               Conread position:147-834
               
               
               Cow position:chr10:21490628-21489901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 77

               
               
               Conread position:147-834
               
               
               Cow position:chr10:23412750-23412009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 609

               
               
               Conread position:147-834
               
               
               Cow position:chr10:32282719-32281977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 356

               
               
               Conread position:147-834
               
               
               Cow position:chr10:38154846-38154109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 29

               
               
               Conread position:148-358
               
               
               Cow position:chr10:54799141-54798907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-387
               
               
               Cow position:chr10:21422882-21423143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 51

               
               
               Conread position:148-554
               
               
               Cow position:chr10:3998307-3997885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 23

               
               
               Conread position:148-643
               
               
               Cow position:chr10:19541713-19542250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:344
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):11, 119

               
               
               Conread position:148-692
               
               
               Cow position:chr10:19522450-19523041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 486

               
               
               Conread position:148-778
               
               
               Cow position:chr10:41771800-41772462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 110

               
               
               Conread position:148-831
               
               
               Cow position:chr10:28039867-28040596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:148-834
               
               
               Cow position:chr10:19514911-19514195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 127

               
               
               Conread position:148-834
               
               
               Cow position:chr10:26732261-26732983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 243

               
               
               Conread position:148-834
               
               
               Cow position:chr10:26922586-26923326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 392

               
               
               Conread position:148-834
               
               
               Cow position:chr10:42644239-42643509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:535
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 85

               
               
               Conread position:148-835
               
               
               Cow position:chr10:7278402-7279139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 387

               
               
               Conread position:150-536
               
               
               Cow position:chr10:25259405-25258997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 9

               
               
               Conread position:150-578
               
               
               Cow position:chr10:44866572-44866102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:319
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):72, 9

               
               
               Conread position:150-614
               
               
               Cow position:chr10:60960312-60959808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 8

               
               
               Conread position:150-655
               
               
               Cow position:chr10:28775523-28774979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 8

               
               
               Conread position:150-829
               
               
               Cow position:chr10:22528520-22529251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:537
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 8

               
               
               Conread position:150-834
               
               
               Cow position:chr10:21397523-21398258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 8

               
               
               Conread position:151-480
               
               
               Cow position:chr10:14788134-14788495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:249
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:153-760
               
               
               Cow position:chr10:59840085-59840743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 252

               
               
               Conread position:153-773
               
               
               Cow position:chr10:40643716-40643039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:453
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):6, 89

               
               
               Conread position:154-523
               
               
               Cow position:chr10:36465793-36466178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:155-387
               
               
               Cow position:chr10:26693393-26693152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):64, 198

               
               
               Conread position:156-468
               
               
               Cow position:chr10:58399967-58400300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):63, 190

               
               
               Conread position:156-811
               
               
               Cow position:chr10:14908931-14908245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 102

               
               
               Conread position:157-548
               
               
               Cow position:chr10:29815961-29815549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 145

               
               
               Conread position:158-293
               
               
               Cow position:chr10:39524105-39523968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:158-326
               
               
               Cow position:chr10:29278830-29278648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 83

               
               
               Conread position:158-369
               
               
               Cow position:chr10:22281321-22281554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr10:45725148-45724902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-394
               
               
               Cow position:chr10:38725042-38724791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):67, 41

               
               
               Conread position:158-410
               
               
               Cow position:chr10:44440259-44440536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr10:14824603-14824930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr10:53964128-53963801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr10:55600947-55600620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):64, 275

               
               
               Conread position:158-457
               
               
               Cow position:chr10:65347082-65347413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:158-458
               
               
               Cow position:chr10:9527011-9527340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):67, 36

               
               
               Conread position:158-467
               
               
               Cow position:chr10:10023650-10023315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):64, 82

               
               
               Conread position:158-520
               
               
               Cow position:chr10:7825704-7826106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:273
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:158-528
               
               
               Cow position:chr10:7274048-7274452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:274
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):64, 105

               
               
               Conread position:158-528
               
               
               Cow position:chr10:38397062-38397469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:158-540
               
               
               Cow position:chr10:22320911-22320495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):64, 329

               
               
               Conread position:158-540
               
               
               Cow position:chr10:53081934-53081518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):64, 29

               
               
               Conread position:158-551
               
               
               Cow position:chr10:21466077-21466508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:292
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-551
               
               
               Cow position:chr10:34334323-34334754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:293
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr10:32700642-32700178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:307
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):64, 381

               
               
               Conread position:158-611
               
               
               Cow position:chr10:55975229-55974728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:332
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:158-614
               
               
               Cow position:chr10:40591907-40591403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:339
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-626
               
               
               Cow position:chr10:21656803-21656303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 140

               
               
               Conread position:158-633
               
               
               Cow position:chr10:22978470-22978984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 23

               
               
               Conread position:158-685
               
               
               Cow position:chr10:21736986-21737565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 311

               
               
               Conread position:158-692
               
               
               Cow position:chr10:15888667-15888088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 262

               
               
               Conread position:158-702
               
               
               Cow position:chr10:7497443-7498041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 583

               
               
               Conread position:158-705
               
               
               Cow position:chr10:48162660-48162070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:381
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):61, 50

               
               
               Conread position:158-714
               
               
               Cow position:chr10:44785980-44785386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:395
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):66, 253

               
               
               Conread position:158-784
               
               
               Cow position:chr10:45977874-45978530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 40

               
               
               Conread position:158-786
               
               
               Cow position:chr10:1979295-1979965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 585

               
               
               Conread position:158-810
               
               
               Cow position:chr10:277666-278367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 593

               
               
               Conread position:158-824
               
               
               Cow position:chr10:66402944-66402243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 179

               
               
               Conread position:158-825
               
               
               Cow position:chr10:26539219-26539936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 335

               
               
               Conread position:158-825
               
               
               Cow position:chr10:50452244-50451529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 343

               
               
               Conread position:158-830
               
               
               Cow position:chr10:19843363-19842639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr10:7894756-7895484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 592

               
               
               Conread position:158-834
               
               
               Cow position:chr10:14807628-14806899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr10:15490519-15489787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 598

               
               
               Conread position:158-834
               
               
               Cow position:chr10:17960049-17959328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 430

               
               
               Conread position:158-834
               
               
               Cow position:chr10:21729009-21729740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 345

               
               
               Conread position:158-834
               
               
               Cow position:chr10:25562865-25563594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 209

               
               
               Conread position:158-834
               
               
               Cow position:chr10:32365631-32364902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 184

               
               
               Conread position:158-834
               
               
               Cow position:chr10:37530133-37530838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 313

               
               
               Conread position:158-834
               
               
               Cow position:chr10:47910307-47909580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 593

               
               
               Conread position:158-834
               
               
               Cow position:chr10:48390065-48390793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 119

               
               
               Conread position:159-376
               
               
               Cow position:chr10:4711008-4710778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):63, 127

               
               
               Conread position:159-382
               
               
               Cow position:chr10:39648280-39648525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:159-755
               
               
               Cow position:chr10:54928249-54928876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:427
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):63, 199

               
               
               Conread position:159-825
               
               
               Cow position:chr10:25256424-25255733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 135

               
               
               Conread position:159-834
               
               
               Cow position:chr10:30720386-30719658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 594

               
               
               Conread position:160-304
               
               
               Cow position:chr10:8324031-8324181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):64, 38

               
               
               Conread position:160-381
               
               
               Cow position:chr10:9569174-9569417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:160-452
               
               
               Cow position:chr10:3114646-3114323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:160-453
               
               
               Cow position:chr10:24785468-24785146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):62, 81

               
               
               Conread position:160-462
               
               
               Cow position:chr10:54141311-54140994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):63, 14

               
               
               Conread position:160-504
               
               
               Cow position:chr10:43489317-43488939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-540
               
               
               Cow position:chr10:130603-130192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:160-580
               
               
               Cow position:chr10:57553451-57553914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:315
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-693
               
               
               Cow position:chr10:14948443-14947869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:379
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):34, 143

               
               
               Conread position:160-778
               
               
               Cow position:chr10:45309539-45310188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:405
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):65, 103

               
               
               Conread position:160-803
               
               
               Cow position:chr10:41637021-41636396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:411
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):31, 82

               
               
               Conread position:160-811
               
               
               Cow position:chr10:14857968-14857294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:452
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):62, 274

               
               
               Conread position:160-812
               
               
               Cow position:chr10:31374730-31375427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 470

               
               
               Conread position:160-814
               
               
               Cow position:chr10:20542879-20542186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 149

               
               
               Conread position:160-819
               
               
               Cow position:chr10:37125527-37126239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 274

               
               
               Conread position:160-824
               
               
               Cow position:chr10:20266806-20267495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 15

               
               
               Conread position:160-829
               
               
               Cow position:chr10:51559090-51558369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 595

               
               
               Conread position:160-832
               
               
               Cow position:chr10:49145922-49145215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:532
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 134

               
               
               Conread position:160-834
               
               
               Cow position:chr10:40567331-40566643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:459
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):55, 48

               
               
               Conread position:160-834
               
               
               Cow position:chr10:42754726-42754034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:160-834
               
               
               Cow position:chr10:44705024-44705744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 233

               
               
               Conread position:160-834
               
               
               Cow position:chr10:50315319-50314598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:470
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):66, 41

               
               
               Conread position:161-381
               
               
               Cow position:chr10:873876-873633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:161-387
               
               
               Cow position:chr10:42320490-42320723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:161-399
               
               
               Cow position:chr10:55027612-55027359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):60, 88

               
               
               Conread position:161-452
               
               
               Cow position:chr10:68275556-68275856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 73

               
               
               Conread position:161-808
               
               
               Cow position:chr10:14846934-14846246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 354

               
               
               Conread position:161-815
               
               
               Cow position:chr10:1185484-1186168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 282

               
               
               Conread position:161-820
               
               
               Cow position:chr10:1434808-1434109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:451
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):63, 254

               
               
               Conread position:161-822
               
               
               Cow position:chr10:60703357-60704053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:438
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):28, 323

               
               
               Conread position:161-833
               
               
               Cow position:chr10:5784552-5785270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 102

               
               
               Conread position:161-834
               
               
               Cow position:chr10:37788316-37789036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 42

               
               
               Conread position:162-351
               
               
               Cow position:chr10:30523638-30523846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 201

               
               
               Conread position:162-705
               
               
               Cow position:chr10:4995214-4995803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:377
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):68, 152

               
               
               Conread position:162-828
               
               
               Cow position:chr10:20372743-20373457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 107

               
               
               Conread position:162-834
               
               
               Cow position:chr10:19719220-19719910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:439
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:163-737
               
               
               Cow position:chr10:54376261-54376874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:399
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):126, 55

               
               
               Conread position:163-888
               
               
               Cow position:chr10:56687403-56688155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:773
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:164-756
               
               
               Cow position:chr10:45730324-45730954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 57

               
               
               Conread position:164-778
               
               
               Cow position:chr10:25693345-25692666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:453
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):56, 232

               
               
               Conread position:164-815
               
               
               Cow position:chr10:6905951-6905293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:436
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):60, 5

               
               
               Conread position:165-626
               
               
               Cow position:chr10:65131379-65131871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:329
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):57, 115

               
               
               Conread position:167-382
               
               
               Cow position:chr10:44203034-44203254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):47, 55

               
               
               Conread position:167-510
               
               
               Cow position:chr10:6850899-6850527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 292

               
               
               Conread position:167-631
               
               
               Cow position:chr10:31816413-31816926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:167-731
               
               
               Cow position:chr10:37913795-37914358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 80

               
               
               Conread position:167-834
               
               
               Cow position:chr10:10721579-10722284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 171

               
               
               Conread position:169-566
               
               
               Cow position:chr10:9451990-9452402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 56

               
               
               Conread position:170-834
               
               
               Cow position:chr10:34666233-34666946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 547

               
               
               Conread position:171-526
               
               
               Cow position:chr10:46491649-46492038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):51, 312

               
               
               Conread position:172-580
               
               
               Cow position:chr10:63776506-63776054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:302
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:172-807
               
               
               Cow position:chr10:20398576-20397915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 29

               
               
               Conread position:173-815
               
               
               Cow position:chr10:60206800-60206123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 14

               
               
               Conread position:175-558
               
               
               Cow position:chr10:21413833-21414250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:278
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):45, 312

               
               
               Conread position:178-684
               
               
               Cow position:chr10:55286606-55286057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:357
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):24, 82

               
               
               Conread position:182-825
               
               
               Cow position:chr10:17223031-17222344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 562

               
               
               Conread position:186-812
               
               
               Cow position:chr10:64286728-64287382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 61

               
               
               Conread position:187-768
               
               
               Cow position:chr10:40148504-40149109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 176

               
               
               Conread position:189-822
               
               
               Cow position:chr10:28030279-28030959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 524

               
               
               Conread position:189-825
               
               
               Cow position:chr10:2116788-2117470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 310

               
               
               Conread position:189-831
               
               
               Cow position:chr10:50016731-50017396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 260

               
               
               Conread position:189-834
               
               
               Cow position:chr10:10046904-10047571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 106

               
               
               Conread position:189-834
               
               
               Cow position:chr10:27120263-27120946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:190-834
               
               
               Cow position:chr10:48373786-48374482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 302

               
               
               Conread position:201-834
               
               
               Cow position:chr10:19140973-19141646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 44

               
               
               Conread position:201-860
               
               
               Cow position:chr10:55098307-55098990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 223

               
               
               Conread position:208-540
               
               
               Cow position:chr10:39638334-39637973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:208-692
               
               
               Cow position:chr10:39810877-39811407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:350
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:208-834
               
               
               Cow position:chr10:32087296-32086651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 96

               
               
               Conread position:208-834
               
               
               Cow position:chr10:57986061-57986732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 541

               
               
               Conread position:220-819
               
               
               Cow position:chr10:50199586-50198961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 88

               
               
               Conread position:221-540
               
               
               Cow position:chr10:41623189-41622849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):15, 34

               
               
               Conread position:221-557
               
               
               Cow position:chr10:60354757-60354393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:221-834
               
               
               Cow position:chr10:20446433-20445780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:221-834
               
               
               Cow position:chr10:31021434-31022092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 524

               
               
               Conread position:225-807
               
               
               Cow position:chr10:28527814-28528428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:401
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):54, 98

               
               
               Conread position:225-825
               
               
               Cow position:chr10:15619776-15620415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 269

               
               
               Conread position:227-834
               
               
               Cow position:chr10:30681887-30682526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 168

               
               
               Conread position:229-834
               
               
               Cow position:chr10:40697074-40697712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:399
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):27, 39

               
               
               Conread position:235-645
               
               
               Cow position:chr10:55931087-55930639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:300
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:235-668
               
               
               Cow position:chr10:48909540-48909069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:308
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:235-699
               
               
               Cow position:chr10:11406874-11406399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:325
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):49, 83

               
               
               Conread position:235-811
               
               
               Cow position:chr10:14976871-14976276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:390
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):53, 251

               
               
               Conread position:235-825
               
               
               Cow position:chr10:24751514-24750882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 236

               
               
               Conread position:236-540
               
               
               Cow position:chr10:68095467-68095797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:240-823
               
               
               Cow position:chr10:21709640-21710261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 495

               
               
               Conread position:241-809
               
               
               Cow position:chr10:44669070-44669676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:400
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):49, 188

               
               
               Conread position:241-832
               
               
               Cow position:chr10:55011403-55010774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 19

               
               
               Conread position:242-627
               
               
               Cow position:chr10:56078343-56077920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:275
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:243-823
               
               
               Cow position:chr10:55037005-55036414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:244-834
               
               
               Cow position:chr10:20367612-20368210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:400
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:245-834
               
               
               Cow position:chr10:40737262-40736650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:248-480
               
               
               Cow position:chr10:58690184-58689954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:248-546
               
               
               Cow position:chr10:40106345-40106025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):38, 178

               
               
               Conread position:248-814
               
               
               Cow position:chr10:19880281-19880881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:375
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):93, 218

               
               
               Conread position:250-824
               
               
               Cow position:chr10:14730379-14730958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:391
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):34, 59

               
               
               Conread position:251-825
               
               
               Cow position:chr10:29106246-29106842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 31

               
               
               Conread position:253-834
               
               
               Cow position:chr10:26766133-26765512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 488

               
               
               Conread position:255-748
               
               
               Cow position:chr10:7259685-7260221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:360
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):40, 488

               
               
               Conread position:260-580
               
               
               Cow position:chr10:28568997-28568661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):116, 51

               
               
               Conread position:267-692
               
               
               Cow position:chr10:5858387-5857925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:276
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:268-819
               
               
               Cow position:chr10:9445723-9446314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 17

               
               
               Conread position:269-833
               
               
               Cow position:chr10:18041520-18040960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 69

               
               
               Conread position:277-518
               
               
               Cow position:chr10:10101357-10101102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:281-825
               
               
               Cow position:chr10:9580524-9581101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 133

               
               
               Conread position:288-461
               
               
               Cow position:chr10:60238469-60238646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):49, 96

               
               
               Conread position:289-834
               
               
               Cow position:chr10:69935569-69936111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 227

               
               
               Conread position:290-548
               
               
               Cow position:chr10:3317290-3317025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):52, 132

               
               
               Conread position:290-548
               
               
               Cow position:chr10:25866152-25866430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:290-548
               
               
               Cow position:chr10:28339874-28339601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):49, 76

               
               
               Conread position:290-643
               
               
               Cow position:chr10:10570699-10570316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):51, 200

               
               
               Conread position:290-693
               
               
               Cow position:chr10:25341648-25341215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:288
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:290-815
               
               
               Cow position:chr10:53058764-53059325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 445

               
               
               Conread position:290-823
               
               
               Cow position:chr10:38542179-38542745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 168

               
               
               Conread position:290-824
               
               
               Cow position:chr10:65733916-65733351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:375
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):49, 119

               
               
               Conread position:290-825
               
               
               Cow position:chr10:48171072-48170493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 421

               
               
               Conread position:290-834
               
               
               Cow position:chr10:1662431-1663004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 268

               
               
               Conread position:291-741
               
               
               Cow position:chr10:45661870-45661386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:322
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):48, 166

               
               
               Conread position:291-822
               
               
               Cow position:chr10:46172674-46173215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 102

               
               
               Conread position:292-548
               
               
               Cow position:chr10:60723445-60723715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):47, 65

               
               
               Conread position:292-803
               
               
               Cow position:chr10:43081299-43080755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 229

               
               
               Conread position:293-693
               
               
               Cow position:chr10:60029262-60028828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 167

               
               
               Conread position:295-821
               
               
               Cow position:chr10:8220040-8219479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:369
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):42, 126

               
               
               Conread position:302-471
               
               
               Cow position:chr10:38911246-38911425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:302-645
               
               
               Cow position:chr10:63938888-63938524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:302-766
               
               
               Cow position:chr10:59173540-59174013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:327
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):39, 271

               
               
               Conread position:311-834
               
               
               Cow position:chr10:60363495-60362939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:358
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):30, 54

               
               
               Conread position:315-825
               
               
               Cow position:chr10:22344977-22344436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 416

               
               
               Conread position:321-814
               
               
               Cow position:chr10:40139745-40140259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 36

               
               
               Conread position:322-825
               
               
               Cow position:chr10:20380478-20381015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 335

               
               
               Conread position:335-771
               
               
               Cow position:chr10:39971436-39970968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 394

               
               
               Conread position:336-743
               
               
               Cow position:chr10:11216702-11217138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):48, 389

               
               
               Conread position:336-834
               
               
               Cow position:chr10:24297005-24297540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 401

               
               
               Conread position:340-778
               
               
               Cow position:chr10:56376865-56377328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:302
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):49, 130

               
               
               Conread position:341-730
               
               
               Cow position:chr10:49914272-49914677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:279
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):48, 256

               
               
               Conread position:341-811
               
               
               Cow position:chr10:20516401-20515899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 296

               
               
               Conread position:341-834
               
               
               Cow position:chr10:24293535-24294029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:337
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):48, 143

               
               
               Conread position:342-834
               
               
               Cow position:chr10:41139536-41140057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 29

               
               
               Conread position:344-834
               
               
               Cow position:chr10:48654334-48653841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:328
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:345-834
               
               
               Cow position:chr10:17543552-17544059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:334
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):149, 15

               
               
               Conread position:347-741
               
               
               Cow position:chr10:24757601-24757179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:285
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):38, 170

               
               
               Conread position:351-561
               
               
               Cow position:chr10:22984253-22984479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):30, 97

               
               
               Conread position:351-834
               
               
               Cow position:chr10:16929640-16929121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 381

               
               
               Conread position:352-846
               
               
               Cow position:chr10:24974207-24974692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:355-834
               
               
               Cow position:chr10:17491934-17492449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 89

               
               
               Conread position:355-834
               
               
               Cow position:chr10:64301228-64301738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 373

               
               
               Conread position:374-825
               
               
               Cow position:chr10:31542084-31541620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:306
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):100, 220

               
               
               Conread position:375-834
               
               
               Cow position:chr10:46241483-46240999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 14

               
               
               Conread position:408-824
               
               
               Cow position:chr10:38520003-38520417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:287
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:414-833
               
               
               Cow position:chr10:25756611-25756187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 55

               
               
               Conread position:414-834
               
               
               Cow position:chr10:19709171-19708727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 90

               
               
               Conread position:421-710
               
               
               Cow position:chr10:24870014-24869706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:421-747
               
               
               Cow position:chr10:26957337-26956992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):9, 298

               
               
               Conread position:421-825
               
               
               Cow position:chr10:69530851-69530433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 181

               
               
               Conread position:421-834
               
               
               Cow position:chr10:18106962-18106529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 300

               
               
               Conread position:421-834
               
               
               Cow position:chr10:19491379-19491812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr10:38818305-38817870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-849
               
               
               Cow position:chr10:61312882-61312442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 175

               
               
               Conread position:422-815
               
               
               Cow position:chr10:3181168-3181572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 74

               
               
               Conread position:423-834
               
               
               Cow position:chr10:14971282-14970872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):276, 0

               
               
               Conread position:424-834
               
               
               Cow position:chr10:49311421-49310998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 87

               
               
               Conread position:426-834
               
               
               Cow position:chr10:27004188-27004617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 292

               
               
               Conread position:427-831
               
               
               Cow position:chr10:14866237-14865821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:287
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):50, 286

               
               
               Conread position:427-834
               
               
               Cow position:chr10:38724657-38724233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 288

               
               
               Conread position:438-815
               
               
               Cow position:chr10:16586483-16586087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):54, 65

               
               
               Conread position:453-833
               
               
               Cow position:chr10:2429159-2429553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 155

               
               
               Conread position:465-834
               
               
               Cow position:chr10:6245692-6246072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 119

               
               
               Conread position:486-825
               
               
               Cow position:chr10:58687512-58687160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 228

               
               
               Conread position:491-765
               
               
               Cow position:chr10:26569445-26569738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-786
               
               
               Cow position:chr10:6253505-6253816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 224

               
               
               Conread position:491-813
               
               
               Cow position:chr10:19390267-19390610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):34, 230

               
               
               Conread position:491-819
               
               
               Cow position:chr10:49430983-49430622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):34, 230

               
               
               Conread position:491-825
               
               
               Cow position:chr10:19330911-19330556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):34, 101

               
               
               Conread position:491-834
               
               
               Cow position:chr10:36274851-36275213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr10:57554011-57554372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 227

               
               
               Conread position:491-834
               
               
               Cow position:chr10:62776194-62775832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:492-822
               
               
               Cow position:chr10:53337650-53337301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:250
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):33, 141

               
               
               Conread position:497-815
               
               
               Cow position:chr10:29812403-29812727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):20, 5

               
               
               Conread position:505-818
               
               
               Cow position:chr10:38942926-38942603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:505-831
               
               
               Cow position:chr10:53127689-53127361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):51, 30

               
               
               Conread position:505-834
               
               
               Cow position:chr10:23849266-23848929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:505-834
               
               
               Cow position:chr10:51837417-51837752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:509-814
               
               
               Cow position:chr10:33218899-33219203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):63, 27

               
               
               Conread position:515-813
               
               
               Cow position:chr10:25264797-25264507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):70, 26

               
               
               Conread position:516-834
               
               
               Cow position:chr10:21432541-21432203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 165

               
               
               Conread position:521-834
               
               
               Cow position:chr10:25650138-25650456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:521-834
               
               
               Cow position:chr10:65308648-65308328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:527-808
               
               
               Cow position:chr10:10753973-10754261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):40, 179

               
               
               Conread position:529-834
               
               
               Cow position:chr10:12101098-12101407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:530-815
               
               
               Cow position:chr10:4501218-4500934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:545-772
               
               
               Cow position:chr10:36466506-36466746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 162

               
               
               Conread position:545-807
               
               
               Cow position:chr10:6002343-6002614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):18, 148

               
               
               Conread position:545-819
               
               
               Cow position:chr10:39848962-39849247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):26, 164

               
               
               Conread position:545-834
               
               
               Cow position:chr10:2848147-2847850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 160

               
               
               Conread position:551-795
               
               
               Cow position:chr10:128850-128599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):22, 158

               
               
               Conread position:553-821
               
               
               Cow position:chr10:48742747-48743022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):20, 154

               
               
               Conread position:567-824
               
               
               Cow position:chr10:36230731-36230478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:568-819
               
               
               Cow position:chr10:53158849-53158595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):69, 55

               
               
               Conread position:569-803
               
               
               Cow position:chr10:21414491-21414730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):82, 132

               
               
               Conread position:569-831
               
               
               Cow position:chr10:20111984-20111714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):83, 137

               
               
               Conread position:569-834
               
               
               Cow position:chr10:34335264-34335534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-834
               
               
               Cow position:chr10:40347425-40347695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-834
               
               
               Cow position:chr10:66142717-66142447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):83, 136

               
               
               Conread position:570-834
               
               
               Cow position:chr10:46171644-46171377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):77, 135

               
               
               Conread position:572-822
               
               
               Cow position:chr10:38843392-38843138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):74, 98

               
               
               Conread position:572-834
               
               
               Cow position:chr10:21426074-21426340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):76, 134

               
               
               Conread position:574-807
               
               
               Cow position:chr10:38273218-38272980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):70, 120

               
               
               Conread position:589-834
               
               
               Cow position:chr10:31044392-31044638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):59, 113

               
               
               Conread position:591-834
               
               
               Cow position:chr10:23649365-23649613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):52, 116

               
               
               Conread position:591-834
               
               
               Cow position:chr10:25632628-25632874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):61, 112

               
               
               Conread position:591-834
               
               
               Cow position:chr10:32699875-32699628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):56, 93

               
               
               Conread position:591-834
               
               
               Cow position:chr10:66773184-66773432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-835
               
               
               Cow position:chr10:3495007-3495254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-838
               
               
               Cow position:chr10:57473092-57473342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:592-834
               
               
               Cow position:chr10:39775797-39776043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):45, 115

               
               
               Conread position:592-834
               
               
               Cow position:chr10:40106018-40105771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 107

               
               
               Conread position:594-819
               
               
               Cow position:chr10:47591593-47591824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):11, 110

               
               
               Conread position:596-834
               
               
               Cow position:chr10:55974203-55973960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):51, 109

               
               
               Conread position:598-834
               
               
               Cow position:chr10:52739061-52738820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):49, 107

               
               
               Conread position:602-828
               
               
               Cow position:chr10:32319623-32319398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:604-818
               
               
               Cow position:chr10:2244088-2243871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):42, 67

               
               
               Conread position:609-796
               
               
               Cow position:chr10:22906950-22907138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):37, 58

               
               
               Conread position:609-819
               
               
               Cow position:chr10:32009269-32009054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:609-834
               
               
               Cow position:chr10:3817464-3817235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:614-819
               
               
               Cow position:chr10:25005101-25004891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 93

               
               
               Conread position:619-825
               
               
               Cow position:chr10:63626405-63626196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):18, 82

               
               
               Conread position:621-834
               
               
               Cow position:chr10:51949916-51950139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):26, 84

               
               
               Conread position:622-834
               
               
               Cow position:chr10:42334425-42334634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:623-834
               
               
               Cow position:chr10:30270270-30270490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):23, 79

               
               
               Conread position:645-807
               
               
               Cow position:chr10:41653542-41653700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:645-825
               
               
               Cow position:chr10:32830799-32830612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):121, 51

               
               
               Conread position:645-829
               
               
               Cow position:chr10:19296256-19296435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:645-834
               
               
               Cow position:chr10:33868033-33868221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:666-807
               
               
               Cow position:chr10:42689766-42689906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:666-815
               
               
               Cow position:chr10:27134348-27134494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:666-833
               
               
               Cow position:chr10:19542315-19542481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr10:68096195-68096366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):42, 30

               
               
               Conread position:667-833
               
               
               Cow position:chr10:26670797-26670632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:668-822
               
               
               Cow position:chr10:35040129-35039976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:668-834
               
               
               Cow position:chr10:16551949-16552117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:678-825
               
               
               Cow position:chr10:47157052-47156909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:689-834
               
               
               Cow position:chr10:42460858-42461002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:691-834
               
               
               Cow position:chr10:5857653-5857510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:696-834
               
               
               Cow position:chr10:9799483-9799622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:697-834
               
               
               Cow position:chr10:1972471-1972608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:697-834
               
               
               Cow position:chr10:21737624-21737761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:701-819
               
               
               Cow position:chr10:4641442-4641324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:703-834
               
               
               Cow position:chr10:39813296-39813427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:723-834
               
               
               Cow position:chr10:41880013-41879902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-410
               
               
               Cow position:chr11:52127471-52127938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:323
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):60, 24

               
               
               Conread position:1-467
               
               
               Cow position:chr11:4031982-4032488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:329
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):74, 53

               
               
               Conread position:62-527
               
               
               Cow position:chr11:8246627-8246118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:341
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):37, 50

               
               
               Conread position:71-398
               
               
               Cow position:chr11:44488434-44488068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):78, 33

               
               
               Conread position:73-293
               
               
               Cow position:chr11:84628465-84628690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 34

               
               
               Conread position:73-327
               
               
               Cow position:chr11:21539852-21540119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:73-337
               
               
               Cow position:chr11:13061730-13062023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):66, 215

               
               
               Conread position:73-380
               
               
               Cow position:chr11:43431194-43431500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:73-382
               
               
               Cow position:chr11:41025248-41024903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:73-382
               
               
               Cow position:chr11:72314023-72313675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-393
               
               
               Cow position:chr11:72050412-72050053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-410
               
               
               Cow position:chr11:75195712-75196093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:265
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-410
               
               
               Cow position:chr11:79995323-79995699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-419
               
               
               Cow position:chr11:42373225-42372847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):35, 40

               
               
               Conread position:73-452
               
               
               Cow position:chr11:31235973-31236395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:294
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:73-480
               
               
               Cow position:chr11:48659162-48658706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:309
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):71, 31

               
               
               Conread position:73-580
               
               
               Cow position:chr11:62009369-62009938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:384
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-580
               
               
               Cow position:chr11:68130818-68130275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:366
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:73-616
               
               
               Cow position:chr11:23883763-23883171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:383
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):107, 35

               
               
               Conread position:73-616
               
               
               Cow position:chr11:38504799-38505406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:408
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:73-635
               
               
               Cow position:chr11:80591772-80591165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:411
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):16, 39

               
               
               Conread position:73-754
               
               
               Cow position:chr11:13087235-13087986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-761
               
               
               Cow position:chr11:62792323-62791569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 35

               
               
               Conread position:73-787
               
               
               Cow position:chr11:9388766-9387984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:786
               
               
               Alignm identity:534
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 35

               
               
               Conread position:73-823
               
               
               Cow position:chr11:73512939-73513749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:824
               
               
               Alignm identity:602
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:73-825
               
               
               Cow position:chr11:58137143-58136327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:819
               
               
               Alignm identity:555
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-832
               
               
               Cow position:chr11:58399751-58398936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:823
               
               
               Alignm identity:593
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr11:417067-417855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:817
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 18

               
               
               Conread position:73-834
               
               
               Cow position:chr11:16229233-16230053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:835
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 58

               
               
               Conread position:73-834
               
               
               Cow position:chr11:26121509-26122320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:818
               
               
               Alignm identity:552
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr11:27724476-27725300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:829
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr11:35737928-35738741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:819
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:73-834
               
               
               Cow position:chr11:62574568-62575372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:811
               
               
               Alignm identity:540
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 361

               
               
               Conread position:73-834
               
               
               Cow position:chr11:73798274-73799097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:828
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:74-532
               
               
               Cow position:chr11:30164981-30164492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:324
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:74-548
               
               
               Cow position:chr11:7705102-7704598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:326
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:74-633
               
               
               Cow position:chr11:77745781-77746400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 37

               
               
               Conread position:74-831
               
               
               Cow position:chr11:48167668-48168457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:803
               
               
               Alignm identity:547
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 364

               
               
               Conread position:75-337
               
               
               Cow position:chr11:31884994-31884721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:75-634
               
               
               Cow position:chr11:67848541-67849174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:422
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):59, 32

               
               
               Conread position:75-806
               
               
               Cow position:chr11:4052942-4053687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:768
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 29

               
               
               Conread position:76-528
               
               
               Cow position:chr11:49411152-49411629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:319
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):19, 281

               
               
               Conread position:77-749
               
               
               Cow position:chr11:42358609-42357891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 23

               
               
               Conread position:78-540
               
               
               Cow position:chr11:38235353-38235859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:341
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):64, 26

               
               
               Conread position:87-668
               
               
               Cow position:chr11:59368634-59369261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:370
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):73, 537

               
               
               Conread position:91-834
               
               
               Cow position:chr11:7330950-7330191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:483
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):81, 19

               
               
               Conread position:96-337
               
               
               Cow position:chr11:16757702-16757965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 41

               
               
               Conread position:96-337
               
               
               Cow position:chr11:44031445-44031186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 8

               
               
               Conread position:113-834
               
               
               Cow position:chr11:1504618-1505395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 9

               
               
               Conread position:118-480
               
               
               Cow position:chr11:37346297-37345919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):28, 65

               
               
               Conread position:119-516
               
               
               Cow position:chr11:52297793-52298225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 79

               
               
               Conread position:119-800
               
               
               Cow position:chr11:31866020-31865268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:758
               
               
               Alignm identity:491
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):21, 9

               
               
               Conread position:119-834
               
               
               Cow position:chr11:7379898-7379173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:753
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:122-449
               
               
               Cow position:chr11:40133431-40133779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):18, 289

               
               
               Conread position:122-453
               
               
               Cow position:chr11:14649872-14650233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):18, 140

               
               
               Conread position:122-479
               
               
               Cow position:chr11:33687119-33687496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:275
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):26, 156

               
               
               Conread position:122-595
               
               
               Cow position:chr11:31836553-31836035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 382

               
               
               Conread position:122-806
               
               
               Cow position:chr11:34023281-34022558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:476
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):18, 379

               
               
               Conread position:122-834
               
               
               Cow position:chr11:11592350-11591585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:773
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 557

               
               
               Conread position:123-823
               
               
               Cow position:chr11:67599948-67599196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:773
               
               
               Alignm identity:537
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 11

               
               
               Conread position:128-522
               
               
               Cow position:chr11:70601921-70602345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):12, 361

               
               
               Conread position:128-824
               
               
               Cow position:chr11:39151952-39151210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 42

               
               
               Conread position:139-834
               
               
               Cow position:chr11:84774513-84773771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:532
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 609

               
               
               Conread position:142-522
               
               
               Cow position:chr11:47757637-47758056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:291
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):33, 14

               
               
               Conread position:142-580
               
               
               Cow position:chr11:5584102-5584572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:315
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:142-709
               
               
               Cow position:chr11:24601349-24600716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:143-278
               
               
               Cow position:chr11:378477-378621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):79, 10

               
               
               Conread position:143-279
               
               
               Cow position:chr11:56651885-56652028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-333
               
               
               Cow position:chr11:50198350-50198550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-337
               
               
               Cow position:chr11:41577611-41577819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:143-361
               
               
               Cow position:chr11:30191136-30190904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):82, 10

               
               
               Conread position:143-369
               
               
               Cow position:chr11:20428606-20428359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr11:31802375-31802635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr11:36167414-36167674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 22

               
               
               Conread position:143-382
               
               
               Cow position:chr11:70978048-70978308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-387
               
               
               Cow position:chr11:11996640-11996896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-387
               
               
               Cow position:chr11:41178296-41178030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):87, 13

               
               
               Conread position:143-393
               
               
               Cow position:chr11:34841804-34842075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-397
               
               
               Cow position:chr11:57594747-57595020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-411
               
               
               Cow position:chr11:71271694-71271982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-446
               
               
               Cow position:chr11:54304247-54303913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-452
               
               
               Cow position:chr11:21820061-21820396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):73, 13

               
               
               Conread position:143-453
               
               
               Cow position:chr11:33189915-33189574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr11:81576343-81576677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-522
               
               
               Cow position:chr11:32956494-32956884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:270
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-522
               
               
               Cow position:chr11:32977684-32978070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:143-522
               
               
               Cow position:chr11:53773010-53772614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):10, 99

               
               
               Conread position:143-528
               
               
               Cow position:chr11:2293716-2294135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-530
               
               
               Cow position:chr11:42793593-42794017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-540
               
               
               Cow position:chr11:30088220-30087786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:296
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-540
               
               
               Cow position:chr11:31833917-31834351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-551
               
               
               Cow position:chr11:32762795-32762351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:309
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-553
               
               
               Cow position:chr11:1625822-1626258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-571
               
               
               Cow position:chr11:7152340-7151873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:316
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-598
               
               
               Cow position:chr11:30700828-30700336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:331
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:143-614
               
               
               Cow position:chr11:66389671-66390181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-614
               
               
               Cow position:chr11:75710909-75711427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:354
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-644
               
               
               Cow position:chr11:17781699-17782231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 18

               
               
               Conread position:143-645
               
               
               Cow position:chr11:3238646-3238096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-645
               
               
               Cow position:chr11:20285274-20285823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-667
               
               
               Cow position:chr11:54302881-54302310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-682
               
               
               Cow position:chr11:24333649-24334241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-685
               
               
               Cow position:chr11:27938936-27938359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:397
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:143-692
               
               
               Cow position:chr11:16547606-16548208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-692
               
               
               Cow position:chr11:30777307-30776705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-692
               
               
               Cow position:chr11:73137922-73137333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:143-708
               
               
               Cow position:chr11:44915342-44915959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:401
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):79, 9

               
               
               Conread position:143-718
               
               
               Cow position:chr11:48428484-48427865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 12

               
               
               Conread position:143-759
               
               
               Cow position:chr11:3796556-3795915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:143-760
               
               
               Cow position:chr11:38599370-38600025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-803
               
               
               Cow position:chr11:80789044-80789764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-804
               
               
               Cow position:chr11:44107022-44106307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 13

               
               
               Conread position:143-814
               
               
               Cow position:chr11:14259622-14260338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-822
               
               
               Cow position:chr11:44233753-44233048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:525
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:143-823
               
               
               Cow position:chr11:33001216-33000494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-824
               
               
               Cow position:chr11:2835605-2834887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr11:49171160-49171889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-829
               
               
               Cow position:chr11:67295662-67296401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 616

               
               
               Conread position:143-831
               
               
               Cow position:chr11:40402439-40403155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr11:7120606-7121362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:762
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr11:19099144-19099882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr11:27660581-27659851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr11:29662718-29663448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr11:30929726-30928983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr11:31929781-31929067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr11:38574141-38574882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr11:41167350-41168093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr11:41260585-41261327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr11:56463705-56462963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:144-425
               
               
               Cow position:chr11:13224558-13224256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:144-541
               
               
               Cow position:chr11:15279481-15279892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):142, 12

               
               
               Conread position:144-570
               
               
               Cow position:chr11:53855870-53855411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:293
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:144-620
               
               
               Cow position:chr11:84531938-84532440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:144-644
               
               
               Cow position:chr11:51289896-51289365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:350
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):75, 12

               
               
               Conread position:144-752
               
               
               Cow position:chr11:25336479-25335824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 12

               
               
               Conread position:144-829
               
               
               Cow position:chr11:17104363-17105082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-834
               
               
               Cow position:chr11:3681509-3682233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:145-367
               
               
               Cow position:chr11:67951553-67951796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-382
               
               
               Cow position:chr11:25525187-25524929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-453
               
               
               Cow position:chr11:10302812-10303138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):6, 18

               
               
               Conread position:145-467
               
               
               Cow position:chr11:56916381-56916733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-522
               
               
               Cow position:chr11:43917778-43917366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:145-528
               
               
               Cow position:chr11:17037192-17037589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:290
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-632
               
               
               Cow position:chr11:21852902-21853433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:145-732
               
               
               Cow position:chr11:75354547-75353906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:145-735
               
               
               Cow position:chr11:30057541-30056912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-738
               
               
               Cow position:chr11:19507675-19507028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 246

               
               
               Conread position:145-768
               
               
               Cow position:chr11:49935406-49936073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-782
               
               
               Cow position:chr11:62873375-62874045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:429
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-825
               
               
               Cow position:chr11:63860302-63861025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr11:14469843-14469127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr11:41599351-41600087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:547
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:146-337
               
               
               Cow position:chr11:30110352-30110151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):13, 105

               
               
               Conread position:146-426
               
               
               Cow position:chr11:37159894-37159597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:146-470
               
               
               Cow position:chr11:19270725-19271047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):13, 67

               
               
               Conread position:146-537
               
               
               Cow position:chr11:8241768-8242191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:146-632
               
               
               Cow position:chr11:77749388-77748876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:351
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):13, 53

               
               
               Conread position:146-825
               
               
               Cow position:chr11:18146225-18146934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:146-834
               
               
               Cow position:chr11:12316719-12317469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:752
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 618

               
               
               Conread position:146-834
               
               
               Cow position:chr11:12353549-12354291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 610

               
               
               Conread position:147-337
               
               
               Cow position:chr11:27934852-27935056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):12, 34

               
               
               Conread position:147-337
               
               
               Cow position:chr11:74564470-74564677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 116

               
               
               Conread position:147-367
               
               
               Cow position:chr11:83322999-83322771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-411
               
               
               Cow position:chr11:43644717-43645007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-452
               
               
               Cow position:chr11:71078767-71078435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):12, 289

               
               
               Conread position:147-522
               
               
               Cow position:chr11:44870861-44870458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 331

               
               
               Conread position:147-539
               
               
               Cow position:chr11:77237185-77236777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:271
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):12, 77

               
               
               Conread position:147-554
               
               
               Cow position:chr11:9432716-9432281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 357

               
               
               Conread position:147-633
               
               
               Cow position:chr11:46780728-46781261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-691
               
               
               Cow position:chr11:35241541-35242127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 197

               
               
               Conread position:147-728
               
               
               Cow position:chr11:43361397-43362006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:401
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):12, 157

               
               
               Conread position:147-731
               
               
               Cow position:chr11:21471965-21471337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 339

               
               
               Conread position:147-811
               
               
               Cow position:chr11:41093524-41094241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 48

               
               
               Conread position:147-825
               
               
               Cow position:chr11:5482104-5482834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 602

               
               
               Conread position:147-825
               
               
               Cow position:chr11:65282351-65281629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:147-825
               
               
               Cow position:chr11:71332841-71332112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 205

               
               
               Conread position:147-825
               
               
               Cow position:chr11:77746748-77747450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:446
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:147-829
               
               
               Cow position:chr11:11991341-11990596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 596

               
               
               Conread position:147-829
               
               
               Cow position:chr11:44255413-44254681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 606

               
               
               Conread position:147-834
               
               
               Cow position:chr11:7681298-7680565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:147-834
               
               
               Cow position:chr11:10851456-10850722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 242

               
               
               Conread position:147-834
               
               
               Cow position:chr11:18920256-18920985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 352

               
               
               Conread position:147-834
               
               
               Cow position:chr11:26550818-26550083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 398

               
               
               Conread position:147-834
               
               
               Cow position:chr11:33601297-33602027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 414

               
               
               Conread position:147-834
               
               
               Cow position:chr11:38641279-38640552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 132

               
               
               Conread position:147-834
               
               
               Cow position:chr11:43510633-43511370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 503

               
               
               Conread position:147-834
               
               
               Cow position:chr11:58140032-58139308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 117

               
               
               Conread position:147-834
               
               
               Cow position:chr11:85390521-85391244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 329

               
               
               Conread position:148-552
               
               
               Cow position:chr11:12112271-12111826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 437

               
               
               Conread position:148-580
               
               
               Cow position:chr11:26482916-26482436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:321
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 162

               
               
               Conread position:148-627
               
               
               Cow position:chr11:63507841-63507321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:353
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):11, 42

               
               
               Conread position:148-814
               
               
               Cow position:chr11:40458514-40457800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 33

               
               
               Conread position:148-815
               
               
               Cow position:chr11:39484563-39483902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:421
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):11, 27

               
               
               Conread position:148-825
               
               
               Cow position:chr11:4266814-4267543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 606

               
               
               Conread position:148-825
               
               
               Cow position:chr11:25565088-25564366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 194

               
               
               Conread position:150-446
               
               
               Cow position:chr11:20601650-20601336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):9, 255

               
               
               Conread position:150-471
               
               
               Cow position:chr11:51477961-51477621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:242
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):75, 8

               
               
               Conread position:150-834
               
               
               Cow position:chr11:17279261-17279982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:481
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):80, 297

               
               
               Conread position:150-834
               
               
               Cow position:chr11:27833418-27834157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 8

               
               
               Conread position:151-773
               
               
               Cow position:chr11:7719177-7719853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 351

               
               
               Conread position:152-834
               
               
               Cow position:chr11:17549492-17548759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 7

               
               
               Conread position:153-398
               
               
               Cow position:chr11:48649089-48648819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:153-785
               
               
               Cow position:chr11:28597580-28598233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:432
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 21

               
               
               Conread position:153-834
               
               
               Cow position:chr11:4024022-4024740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 97

               
               
               Conread position:153-834
               
               
               Cow position:chr11:44579898-44580629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 281

               
               
               Conread position:156-807
               
               
               Cow position:chr11:12179299-12178607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:429
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:156-832
               
               
               Cow position:chr11:7386723-7386020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:454
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):74, 167

               
               
               Conread position:157-782
               
               
               Cow position:chr11:36930203-36930869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 419

               
               
               Conread position:158-282
               
               
               Cow position:chr11:29614676-29614546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-293
               
               
               Cow position:chr11:18328337-18328482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:158-293
               
               
               Cow position:chr11:23773584-23773443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr11:2350849-2350603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr11:2421797-2421551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr11:10043574-10043328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr11:44356558-44356803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):64, 17

               
               
               Conread position:158-410
               
               
               Cow position:chr11:61846621-61846893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 114

               
               
               Conread position:158-453
               
               
               Cow position:chr11:4596897-4596570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr11:10100378-10100051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr11:24397068-24397395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr11:46142659-46142983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:158-453
               
               
               Cow position:chr11:50282080-50282407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-454
               
               
               Cow position:chr11:40139246-40139558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 248

               
               
               Conread position:158-470
               
               
               Cow position:chr11:66664090-66664433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 230

               
               
               Conread position:158-504
               
               
               Cow position:chr11:38097410-38097780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):61, 273

               
               
               Conread position:158-520
               
               
               Cow position:chr11:23904608-23904216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:267
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):64, 102

               
               
               Conread position:158-520
               
               
               Cow position:chr11:74389525-74389133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-522
               
               
               Cow position:chr11:2800930-2801327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:158-524
               
               
               Cow position:chr11:70424716-70424322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):64, 81

               
               
               Conread position:158-528
               
               
               Cow position:chr11:75256520-75256115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-540
               
               
               Cow position:chr11:44893549-44893964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):64, 381

               
               
               Conread position:158-551
               
               
               Cow position:chr11:4734613-4734182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:291
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr11:15047787-15047323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:314
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-611
               
               
               Cow position:chr11:8366890-8366389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:337
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):64, 343

               
               
               Conread position:158-618
               
               
               Cow position:chr11:47573206-47573700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-645
               
               
               Cow position:chr11:11315499-11316037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:357
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):64, 329

               
               
               Conread position:158-645
               
               
               Cow position:chr11:65760277-65760811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:355
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:158-645
               
               
               Cow position:chr11:83001358-83000824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 113

               
               
               Conread position:158-692
               
               
               Cow position:chr11:30255768-30255172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:397
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-692
               
               
               Cow position:chr11:34638174-34638762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:158-721
               
               
               Cow position:chr11:25760072-25759462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:413
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):64, 219

               
               
               Conread position:158-741
               
               
               Cow position:chr11:26592447-26593084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 343

               
               
               Conread position:158-744
               
               
               Cow position:chr11:10871495-10872134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 589

               
               
               Conread position:158-765
               
               
               Cow position:chr11:17854424-17853764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 589

               
               
               Conread position:158-774
               
               
               Cow position:chr11:22617616-22618285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 276

               
               
               Conread position:158-790
               
               
               Cow position:chr11:51034606-51033932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 469

               
               
               Conread position:158-803
               
               
               Cow position:chr11:2286043-2285345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-808
               
               
               Cow position:chr11:52846805-52846104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-814
               
               
               Cow position:chr11:12178418-12177708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 596

               
               
               Conread position:158-825
               
               
               Cow position:chr11:10698416-10699136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 561

               
               
               Conread position:158-825
               
               
               Cow position:chr11:28226448-28227169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 596

               
               
               Conread position:158-825
               
               
               Cow position:chr11:28692652-28693359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 122

               
               
               Conread position:158-825
               
               
               Cow position:chr11:75402195-75402891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 188

               
               
               Conread position:158-830
               
               
               Cow position:chr11:41314625-41313902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 317

               
               
               Conread position:158-834
               
               
               Cow position:chr11:2567364-2568075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 35

               
               
               Conread position:158-834
               
               
               Cow position:chr11:6343789-6343062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 388

               
               
               Conread position:158-834
               
               
               Cow position:chr11:20730893-20731621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 171

               
               
               Conread position:158-834
               
               
               Cow position:chr11:23495082-23494371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 248

               
               
               Conread position:158-834
               
               
               Cow position:chr11:28125843-28125116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 587

               
               
               Conread position:158-834
               
               
               Cow position:chr11:32455384-32454662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 589

               
               
               Conread position:158-834
               
               
               Cow position:chr11:35142006-35142730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 22

               
               
               Conread position:158-834
               
               
               Cow position:chr11:47972538-47973250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 28

               
               
               Conread position:158-834
               
               
               Cow position:chr11:59872135-59871418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:544
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 28

               
               
               Conread position:158-834
               
               
               Cow position:chr11:61397291-61398014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 454

               
               
               Conread position:158-834
               
               
               Cow position:chr11:63390152-63390878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 350

               
               
               Conread position:158-834
               
               
               Cow position:chr11:67453983-67453256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 342

               
               
               Conread position:158-834
               
               
               Cow position:chr11:67920012-67920731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 476

               
               
               Conread position:158-834
               
               
               Cow position:chr11:72369381-72368654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 91

               
               
               Conread position:158-834
               
               
               Cow position:chr11:84967438-84966715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 454

               
               
               Conread position:159-382
               
               
               Cow position:chr11:1268176-1268421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:159-481
               
               
               Cow position:chr11:9079009-9079359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):63, 226

               
               
               Conread position:159-503
               
               
               Cow position:chr11:53280070-53280448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:159-787
               
               
               Cow position:chr11:76767739-76767066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 435

               
               
               Conread position:159-834
               
               
               Cow position:chr11:8443662-8444386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 590

               
               
               Conread position:160-358
               
               
               Cow position:chr11:84723505-84723288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):62, 111

               
               
               Conread position:160-387
               
               
               Cow position:chr11:8233935-8234177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):69, 21

               
               
               Conread position:160-446
               
               
               Cow position:chr11:50135595-50135900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 219

               
               
               Conread position:160-462
               
               
               Cow position:chr11:28394393-28394065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):62, 35

               
               
               Conread position:160-465
               
               
               Cow position:chr11:11858037-11857699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):16, 276

               
               
               Conread position:160-508
               
               
               Cow position:chr11:46583085-46583463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):63, 318

               
               
               Conread position:160-541
               
               
               Cow position:chr11:30194799-30194394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):64, 282

               
               
               Conread position:160-548
               
               
               Cow position:chr11:5222192-5222608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:281
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):59, 190

               
               
               Conread position:160-558
               
               
               Cow position:chr11:16118634-16119048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 210

               
               
               Conread position:160-571
               
               
               Cow position:chr11:67744709-67744260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:307
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):11, 97

               
               
               Conread position:160-644
               
               
               Cow position:chr11:8552122-8551604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:333
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):63, 115

               
               
               Conread position:160-747
               
               
               Cow position:chr11:15495716-15495079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 575

               
               
               Conread position:160-765
               
               
               Cow position:chr11:77764645-77765258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:389
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):65, 263

               
               
               Conread position:160-771
               
               
               Cow position:chr11:73465886-73466535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:424
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):59, 166

               
               
               Conread position:160-808
               
               
               Cow position:chr11:48484750-48485447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 89

               
               
               Conread position:160-817
               
               
               Cow position:chr11:8829465-8830157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 31

               
               
               Conread position:160-824
               
               
               Cow position:chr11:57753895-57754593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 584

               
               
               Conread position:160-828
               
               
               Cow position:chr11:26786538-26785853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 139

               
               
               Conread position:160-828
               
               
               Cow position:chr11:49236647-49237356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 114

               
               
               Conread position:160-829
               
               
               Cow position:chr11:44153755-44154471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 348

               
               
               Conread position:160-834
               
               
               Cow position:chr11:1492545-1493244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 82

               
               
               Conread position:160-834
               
               
               Cow position:chr11:15836241-15835522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 317

               
               
               Conread position:160-834
               
               
               Cow position:chr11:57624859-57625575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 589

               
               
               Conread position:161-335
               
               
               Cow position:chr11:18912355-18912176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):114, 69

               
               
               Conread position:161-368
               
               
               Cow position:chr11:13043547-13043777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):62, 219

               
               
               Conread position:161-395
               
               
               Cow position:chr11:52855115-52854869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):52, 118

               
               
               Conread position:161-503
               
               
               Cow position:chr11:26467627-26467260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):61, 310

               
               
               Conread position:161-547
               
               
               Cow position:chr11:84134863-84135277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 30

               
               
               Conread position:161-744
               
               
               Cow position:chr11:63167193-63167820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 336

               
               
               Conread position:161-800
               
               
               Cow position:chr11:9222353-9222988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 32

               
               
               Conread position:161-804
               
               
               Cow position:chr11:76566783-76566081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 35

               
               
               Conread position:161-805
               
               
               Cow position:chr11:49550700-49551391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 26

               
               
               Conread position:162-540
               
               
               Cow position:chr11:69402895-69403311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:292
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):63, 329

               
               
               Conread position:162-555
               
               
               Cow position:chr11:64844383-64843971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):70, 55

               
               
               Conread position:162-834
               
               
               Cow position:chr11:3496362-3495644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 584

               
               
               Conread position:163-451
               
               
               Cow position:chr11:58816920-58816608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):58, 260

               
               
               Conread position:163-748
               
               
               Cow position:chr11:5273249-5273885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 556

               
               
               Conread position:163-825
               
               
               Cow position:chr11:28381986-28381311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 75

               
               
               Conread position:164-695
               
               
               Cow position:chr11:12762873-12763454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 65

               
               
               Conread position:164-808
               
               
               Cow position:chr11:21477882-21477237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:417
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):58, 167

               
               
               Conread position:164-834
               
               
               Cow position:chr11:41102230-41101523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 315

               
               
               Conread position:165-570
               
               
               Cow position:chr11:12010391-12009953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):54, 259

               
               
               Conread position:165-825
               
               
               Cow position:chr11:10094187-10093493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:166-765
               
               
               Cow position:chr11:1667942-1667296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 374

               
               
               Conread position:166-834
               
               
               Cow position:chr11:75510878-75511591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 117

               
               
               Conread position:167-519
               
               
               Cow position:chr11:38842940-38842561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:257
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):57, 29

               
               
               Conread position:167-539
               
               
               Cow position:chr11:67746729-67746324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 73

               
               
               Conread position:169-833
               
               
               Cow position:chr11:31893246-31892555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:435
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):36, 467

               
               
               Conread position:170-834
               
               
               Cow position:chr11:35541753-35542467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 46

               
               
               Conread position:171-522
               
               
               Cow position:chr11:77033775-77034160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):19, 106

               
               
               Conread position:172-834
               
               
               Cow position:chr11:19060757-19061473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 582

               
               
               Conread position:173-411
               
               
               Cow position:chr11:44938185-44937923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:174-410
               
               
               Cow position:chr11:45632642-45632907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:180-644
               
               
               Cow position:chr11:63479158-63478647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:334
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:181-387
               
               
               Cow position:chr11:44644154-44644379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:183-834
               
               
               Cow position:chr11:26535119-26534441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 77

               
               
               Conread position:185-834
               
               
               Cow position:chr11:59004289-59004954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:420
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:189-387
               
               
               Cow position:chr11:7926008-7926208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 157

               
               
               Conread position:189-645
               
               
               Cow position:chr11:74990920-74990415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:336
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:189-717
               
               
               Cow position:chr11:34297778-34297220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:381
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):33, 231

               
               
               Conread position:189-721
               
               
               Cow position:chr11:67347827-67348388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 281

               
               
               Conread position:189-823
               
               
               Cow position:chr11:40772774-40773427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 60

               
               
               Conread position:189-824
               
               
               Cow position:chr11:21896405-21897077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:459
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):33, 73

               
               
               Conread position:189-825
               
               
               Cow position:chr11:32077484-32078169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 562

               
               
               Conread position:189-834
               
               
               Cow position:chr11:38832180-38832877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 564

               
               
               Conread position:191-825
               
               
               Cow position:chr11:33687767-33688409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 103

               
               
               Conread position:192-644
               
               
               Cow position:chr11:66943923-66944369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:308
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):44, 190

               
               
               Conread position:200-548
               
               
               Cow position:chr11:48411816-48411426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):19, 70

               
               
               Conread position:204-767
               
               
               Cow position:chr11:7377288-7376719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:400
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):98, 27

               
               
               Conread position:208-580
               
               
               Cow position:chr11:70030691-70030285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):24, 285

               
               
               Conread position:221-615
               
               
               Cow position:chr11:7229619-7229185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:291
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:221-713
               
               
               Cow position:chr11:12077163-12077679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:332
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):15, 73

               
               
               Conread position:221-756
               
               
               Cow position:chr11:10365143-10365710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 154

               
               
               Conread position:221-820
               
               
               Cow position:chr11:21728760-21729401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 418

               
               
               Conread position:221-825
               
               
               Cow position:chr11:45651668-45652303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 15

               
               
               Conread position:222-815
               
               
               Cow position:chr11:18067565-18068180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 57

               
               
               Conread position:224-769
               
               
               Cow position:chr11:37279326-37279910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 481

               
               
               Conread position:227-815
               
               
               Cow position:chr11:29013443-29012842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:390
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):64, 39

               
               
               Conread position:229-655
               
               
               Cow position:chr11:21620390-21619928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:307
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):66, 438

               
               
               Conread position:233-834
               
               
               Cow position:chr11:10959066-10958432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 500

               
               
               Conread position:235-544
               
               
               Cow position:chr11:8844420-8844090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):45, 306

               
               
               Conread position:235-761
               
               
               Cow position:chr11:81067973-81067423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 91

               
               
               Conread position:235-795
               
               
               Cow position:chr11:24493565-24494168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 508

               
               
               Conread position:235-834
               
               
               Cow position:chr11:58049689-58050319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 289

               
               
               Conread position:236-548
               
               
               Cow position:chr11:3230562-3230226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:251
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):44, 250

               
               
               Conread position:236-825
               
               
               Cow position:chr11:30200457-30201082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:246-824
               
               
               Cow position:chr11:25808528-25809132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 61

               
               
               Conread position:248-822
               
               
               Cow position:chr11:86579144-86578542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 37

               
               
               Conread position:253-480
               
               
               Cow position:chr11:64904305-64904063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:253-786
               
               
               Cow position:chr11:15995711-15995133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 36

               
               
               Conread position:255-813
               
               
               Cow position:chr11:33733367-33733955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 193

               
               
               Conread position:257-816
               
               
               Cow position:chr11:58804610-58805197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:258-828
               
               
               Cow position:chr11:45550334-45549752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:369
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 61

               
               
               Conread position:262-834
               
               
               Cow position:chr11:74929004-74928401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 220

               
               
               Conread position:263-834
               
               
               Cow position:chr11:259937-260544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 389

               
               
               Conread position:265-818
               
               
               Cow position:chr11:46412841-46412266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 310

               
               
               Conread position:267-825
               
               
               Cow position:chr11:60824981-60824385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:389
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):28, 365

               
               
               Conread position:269-639
               
               
               Cow position:chr11:76960648-76960263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):68, 103

               
               
               Conread position:269-822
               
               
               Cow position:chr11:53428821-53429409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 96

               
               
               Conread position:269-834
               
               
               Cow position:chr11:83285082-83284496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 128

               
               
               Conread position:282-551
               
               
               Cow position:chr11:56228116-56227828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 6

               
               
               Conread position:282-828
               
               
               Cow position:chr11:26655783-26655222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:354
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):57, 106

               
               
               Conread position:285-834
               
               
               Cow position:chr11:4206357-4205782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 439

               
               
               Conread position:286-815
               
               
               Cow position:chr11:10885457-10884911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:353
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):56, 87

               
               
               Conread position:288-831
               
               
               Cow position:chr11:8018938-8018375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:362
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):51, 38

               
               
               Conread position:290-540
               
               
               Cow position:chr11:21371901-21372171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:290-540
               
               
               Cow position:chr11:32108946-32108685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:290-644
               
               
               Cow position:chr11:4675453-4675819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):49, 129

               
               
               Conread position:290-825
               
               
               Cow position:chr11:40487333-40486768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 161

               
               
               Conread position:290-831
               
               
               Cow position:chr11:75552619-75553182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:366
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):49, 130

               
               
               Conread position:291-769
               
               
               Cow position:chr11:32875764-32876277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 444

               
               
               Conread position:291-825
               
               
               Cow position:chr11:50510493-50511062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 444

               
               
               Conread position:291-832
               
               
               Cow position:chr11:11257225-11256675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 9

               
               
               Conread position:291-834
               
               
               Cow position:chr11:9708327-9707749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 193

               
               
               Conread position:292-755
               
               
               Cow position:chr11:17980118-17980611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:325
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):47, 25

               
               
               Conread position:292-815
               
               
               Cow position:chr11:49556152-49556706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:369
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):49, 117

               
               
               Conread position:294-692
               
               
               Cow position:chr11:17997758-17998189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:293
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:295-794
               
               
               Cow position:chr11:28631708-28631174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 440

               
               
               Conread position:297-817
               
               
               Cow position:chr11:50950122-50949569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:299-831
               
               
               Cow position:chr11:22933456-22934010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 159

               
               
               Conread position:301-823
               
               
               Cow position:chr11:54728632-54728075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 260

               
               
               Conread position:306-796
               
               
               Cow position:chr11:61426839-61426333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 98

               
               
               Conread position:306-825
               
               
               Cow position:chr11:48982454-48981906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 59

               
               
               Conread position:310-526
               
               
               Cow position:chr11:38638168-38638398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):27, 137

               
               
               Conread position:315-831
               
               
               Cow position:chr11:27922951-27922397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 425

               
               
               Conread position:339-725
               
               
               Cow position:chr11:59444419-59444836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):47, 386

               
               
               Conread position:339-834
               
               
               Cow position:chr11:50833632-50834157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 392

               
               
               Conread position:339-834
               
               
               Cow position:chr11:63652550-63653078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:350
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):46, 178

               
               
               Conread position:340-548
               
               
               Cow position:chr11:42517465-42517241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:340-819
               
               
               Cow position:chr11:66732253-66731759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 32

               
               
               Conread position:345-805
               
               
               Cow position:chr11:42210653-42210168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:310
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):41, 98

               
               
               Conread position:345-833
               
               
               Cow position:chr11:27055589-27056108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:338
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 18

               
               
               Conread position:348-813
               
               
               Cow position:chr11:26400599-26400103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 57

               
               
               Conread position:349-751
               
               
               Cow position:chr11:38793694-38793271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:286
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):43, 201

               
               
               Conread position:351-834
               
               
               Cow position:chr11:30190861-30190366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 132

               
               
               Conread position:352-825
               
               
               Cow position:chr11:29614506-29614002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 8

               
               
               Conread position:373-762
               
               
               Cow position:chr11:2548571-2548159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:374-645
               
               
               Cow position:chr11:13062320-13062612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:374-834
               
               
               Cow position:chr11:80471872-80472354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:314
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):48, 29

               
               
               Conread position:377-834
               
               
               Cow position:chr11:78778021-78778495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 194

               
               
               Conread position:385-685
               
               
               Cow position:chr11:52128285-52127958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:387-759
               
               
               Cow position:chr11:44875551-44875171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:283
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):28, 20

               
               
               Conread position:403-834
               
               
               Cow position:chr11:38021440-38021875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):244, 198

               
               
               Conread position:414-824
               
               
               Cow position:chr11:41177960-41177539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):7, 32

               
               
               Conread position:417-803
               
               
               Cow position:chr11:60605128-60604723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):61, 15

               
               
               Conread position:420-799
               
               
               Cow position:chr11:52656636-52657020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):8, 31

               
               
               Conread position:421-712
               
               
               Cow position:chr11:57185401-57185088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 295

               
               
               Conread position:421-714
               
               
               Cow position:chr11:23896556-23896241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):9, 295

               
               
               Conread position:421-775
               
               
               Cow position:chr11:40133787-40134148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):9, 107

               
               
               Conread position:421-822
               
               
               Cow position:chr11:44516141-44516556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 22

               
               
               Conread position:421-825
               
               
               Cow position:chr11:42372817-42372413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):9, 135

               
               
               Conread position:421-827
               
               
               Cow position:chr11:7381104-7380694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:297
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):8, 152

               
               
               Conread position:421-829
               
               
               Cow position:chr11:8266851-8266419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:297
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):9, 304

               
               
               Conread position:421-834
               
               
               Cow position:chr11:32477776-32478211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr11:60756943-60757373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 34

               
               
               Conread position:421-834
               
               
               Cow position:chr11:62225292-62224860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 86

               
               
               Conread position:421-834
               
               
               Cow position:chr11:64353286-64353721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 294

               
               
               Conread position:421-834
               
               
               Cow position:chr11:67954093-67954536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 22

               
               
               Conread position:422-811
               
               
               Cow position:chr11:16592601-16592210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):61, 85

               
               
               Conread position:429-806
               
               
               Cow position:chr11:43845332-43845728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:430-808
               
               
               Cow position:chr11:29616282-29616668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:260
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):49, 123

               
               
               Conread position:431-708
               
               
               Cow position:chr11:45633081-45633371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):48, 76

               
               
               Conread position:432-834
               
               
               Cow position:chr11:7324532-7324107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 136

               
               
               Conread position:434-834
               
               
               Cow position:chr11:13044752-13045139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:435-834
               
               
               Cow position:chr11:43991768-43992179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:271
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):52, 21

               
               
               Conread position:439-834
               
               
               Cow position:chr11:9248234-9248643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):42, 71

               
               
               Conread position:442-833
               
               
               Cow position:chr11:7374457-7374051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:287
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):5, 244

               
               
               Conread position:456-825
               
               
               Cow position:chr11:14734391-14734769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):33, 151

               
               
               Conread position:461-824
               
               
               Cow position:chr11:9079569-9079953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:273
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):13, 107

               
               
               Conread position:491-822
               
               
               Cow position:chr11:14650734-14650383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):34, 226

               
               
               Conread position:491-834
               
               
               Cow position:chr11:60222723-60223085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr11:61847770-61848132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr11:72366151-72365789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr11:79748919-79749281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:492-808
               
               
               Cow position:chr11:28393839-28393505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):32, 224

               
               
               Conread position:492-825
               
               
               Cow position:chr11:56917051-56917396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 221

               
               
               Conread position:505-829
               
               
               Cow position:chr11:8246103-8245772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:505-834
               
               
               Cow position:chr11:39599924-39600261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):10, 25

               
               
               Conread position:505-834
               
               
               Cow position:chr11:81338458-81338787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:506-834
               
               
               Cow position:chr11:10128817-10129144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):18, 87

               
               
               Conread position:507-815
               
               
               Cow position:chr11:72313384-72313068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):8, 28

               
               
               Conread position:507-825
               
               
               Cow position:chr11:24396271-24395944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):8, 28

               
               
               Conread position:508-833
               
               
               Cow position:chr11:19073126-19072801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):64, 27

               
               
               Conread position:514-834
               
               
               Cow position:chr11:2534527-2534200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:514-834
               
               
               Cow position:chr11:81576977-81577302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:517-834
               
               
               Cow position:chr11:36765596-36765267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):56, 10

               
               
               Conread position:521-836
               
               
               Cow position:chr11:66859414-66859736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):42, 12

               
               
               Conread position:534-819
               
               
               Cow position:chr11:46687897-46687617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):54, 18

               
               
               Conread position:541-833
               
               
               Cow position:chr11:10214709-10215005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 72

               
               
               Conread position:545-765
               
               
               Cow position:chr11:29547706-29547488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):102, 38

               
               
               Conread position:545-782
               
               
               Cow position:chr11:32254851-32254606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:545-815
               
               
               Cow position:chr11:37069312-37069574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 77

               
               
               Conread position:545-834
               
               
               Cow position:chr11:3230012-3229723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 150

               
               
               Conread position:562-811
               
               
               Cow position:chr11:12493725-12493982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):11, 143

               
               
               Conread position:568-825
               
               
               Cow position:chr11:38069139-38068879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):77, 52

               
               
               Conread position:569-801
               
               
               Cow position:chr11:41621839-41621608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 29

               
               
               Conread position:569-807
               
               
               Cow position:chr11:37117939-37117702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:569-815
               
               
               Cow position:chr11:53690479-53690235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 30

               
               
               Conread position:569-822
               
               
               Cow position:chr11:44514902-44515160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-823
               
               
               Cow position:chr11:56891348-56891606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:569-829
               
               
               Cow position:chr11:4032573-4032830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):76, 136

               
               
               Conread position:569-831
               
               
               Cow position:chr11:15127683-15127419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):77, 133

               
               
               Conread position:569-834
               
               
               Cow position:chr11:45107713-45107442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):69, 137

               
               
               Conread position:569-834
               
               
               Cow position:chr11:83286859-83287129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):79, 132

               
               
               Conread position:570-813
               
               
               Cow position:chr11:5982978-5982730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):78, 132

               
               
               Conread position:571-828
               
               
               Cow position:chr11:84740945-84740684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 15

               
               
               Conread position:579-770
               
               
               Cow position:chr11:45156850-45157046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 128

               
               
               Conread position:582-831
               
               
               Cow position:chr11:50135978-50136231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):62, 120

               
               
               Conread position:587-834
               
               
               Cow position:chr11:66739366-66739616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):61, 116

               
               
               Conread position:590-808
               
               
               Cow position:chr11:8242280-8242500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:591-801
               
               
               Cow position:chr11:9432275-9432061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):55, 114

               
               
               Conread position:591-834
               
               
               Cow position:chr11:56652595-56652846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):55, 111

               
               
               Conread position:613-815
               
               
               Cow position:chr11:9238928-9238722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):24, 175

               
               
               Conread position:620-825
               
               
               Cow position:chr11:17833758-17833967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):16, 81

               
               
               Conread position:620-834
               
               
               Cow position:chr11:7229073-7228855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 86

               
               
               Conread position:645-826
               
               
               Cow position:chr11:37676990-37676810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:645-834
               
               
               Cow position:chr11:8200942-8201130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:645-834
               
               
               Cow position:chr11:15988038-15987850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:645-834
               
               
               Cow position:chr11:66945546-66945733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:652-834
               
               
               Cow position:chr11:12411440-12411257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):14, 46

               
               
               Conread position:665-834
               
               
               Cow position:chr11:7328626-7328463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:665-834
               
               
               Cow position:chr11:7375470-7375303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:666-796
               
               
               Cow position:chr11:30194138-30194009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:666-814
               
               
               Cow position:chr11:87146351-87146204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:666-825
               
               
               Cow position:chr11:46781563-46781721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr11:13062841-13063008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr11:31628293-31628126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr11:32402091-32402258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr11:47736777-47736944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr11:77748546-77748372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:668-834
               
               
               Cow position:chr11:72485129-72484967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:671-834
               
               
               Cow position:chr11:42309707-42309869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:689-834
               
               
               Cow position:chr11:84386063-84386205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:696-834
               
               
               Cow position:chr11:5280776-5280640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr11:30104454-30104590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr11:39584984-39585120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:704-834
               
               
               Cow position:chr11:14260318-14260447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:705-825
               
               
               Cow position:chr11:73137063-73136943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:712-834
               
               
               Cow position:chr11:13049230-13049351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:713-834
               
               
               Cow position:chr11:38702094-38701973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:715-812
               
               
               Cow position:chr11:31531859-31531763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:83
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:736-832
               
               
               Cow position:chr11:63168104-63168200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:84
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:12-834
               
               
               Cow position:chr12:27957766-27958641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:877
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 741

               
               
               Conread position:73-299
               
               
               Cow position:chr12:9142857-9142624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:73-367
               
               
               Cow position:chr12:6491626-6491928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):151, 12

               
               
               Conread position:73-368
               
               
               Cow position:chr12:1408547-1408216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:73-382
               
               
               Cow position:chr12:47415516-47415173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-410
               
               
               Cow position:chr12:30011256-30011629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-410
               
               
               Cow position:chr12:40868048-40867667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:268
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):76, 31

               
               
               Conread position:73-452
               
               
               Cow position:chr12:30016363-30016783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:291
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-467
               
               
               Cow position:chr12:32088945-32088511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:299
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):71, 38

               
               
               Conread position:73-520
               
               
               Cow position:chr12:25838999-25838501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:332
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-540
               
               
               Cow position:chr12:19868930-19868407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:362
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):64, 37

               
               
               Conread position:73-635
               
               
               Cow position:chr12:10076373-10075750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:413
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:73-805
               
               
               Cow position:chr12:11582864-11582076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:802
               
               
               Alignm identity:525
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 29

               
               
               Conread position:73-822
               
               
               Cow position:chr12:19155141-19155952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:833
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 35

               
               
               Conread position:73-825
               
               
               Cow position:chr12:759112-758314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:811
               
               
               Alignm identity:528
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 39

               
               
               Conread position:73-825
               
               
               Cow position:chr12:10931798-10930970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:833
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr12:3716561-3717389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:831
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr12:17982097-17981304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:812
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 39

               
               
               Conread position:73-834
               
               
               Cow position:chr12:25096586-25097379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:534
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 17

               
               
               Conread position:74-676
               
               
               Cow position:chr12:21497206-21497845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 17

               
               
               Conread position:109-562
               
               
               Cow position:chr12:29447468-29446975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:325
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 105

               
               
               Conread position:122-823
               
               
               Cow position:chr12:2285903-2285167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:472
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):18, 74

               
               
               Conread position:123-387
               
               
               Cow position:chr12:5800428-5800142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:123-399
               
               
               Cow position:chr12:20317106-20317391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):16, 151

               
               
               Conread position:125-825
               
               
               Cow position:chr12:21057072-21057802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 8

               
               
               Conread position:138-713
               
               
               Cow position:chr12:24558205-24557585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 183

               
               
               Conread position:141-777
               
               
               Cow position:chr12:4662978-4663611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:405
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:142-283
               
               
               Cow position:chr12:6695510-6695360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:142-387
               
               
               Cow position:chr12:19040241-19040493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:142-549
               
               
               Cow position:chr12:8172533-8172094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:289
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):77, 14

               
               
               Conread position:143-293
               
               
               Cow position:chr12:37843629-37843788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-376
               
               
               Cow position:chr12:43533714-43533460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-377
               
               
               Cow position:chr12:21672307-21672562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr12:8542252-8542508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr12:8673822-8674084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr12:26268589-26268849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr12:32917954-32917697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr12:35459386-35459126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr12:39610781-39611038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-387
               
               
               Cow position:chr12:27852027-27852288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-413
               
               
               Cow position:chr12:38774703-38774424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-443
               
               
               Cow position:chr12:32900525-32900856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr12:17787014-17787355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-519
               
               
               Cow position:chr12:1885713-1886122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:273
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-520
               
               
               Cow position:chr12:14214688-14214278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:282
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-521
               
               
               Cow position:chr12:23475377-23474969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-540
               
               
               Cow position:chr12:22480745-22480318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:301
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-547
               
               
               Cow position:chr12:31260808-31261223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:291
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-561
               
               
               Cow position:chr12:25260125-25260565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-580
               
               
               Cow position:chr12:2229198-2228718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:324
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-626
               
               
               Cow position:chr12:15821346-15820828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-627
               
               
               Cow position:chr12:24028856-24029383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-644
               
               
               Cow position:chr12:27435538-27436065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:351
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-684
               
               
               Cow position:chr12:7674529-7673935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:143-692
               
               
               Cow position:chr12:32147003-32147602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-692
               
               
               Cow position:chr12:46111490-46112092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-734
               
               
               Cow position:chr12:40306897-40306281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-801
               
               
               Cow position:chr12:8841424-8842134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 9

               
               
               Conread position:143-822
               
               
               Cow position:chr12:41337605-41338333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr12:11101875-11101142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr12:42604557-42605282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-831
               
               
               Cow position:chr12:24981334-24980609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr12:21718545-21719287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr12:22202054-22202783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr12:23137701-23138444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr12:25265706-25266448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr12:27506023-27506764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-861
               
               
               Cow position:chr12:1055882-1056649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:772
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:144-337
               
               
               Cow position:chr12:27929100-27929310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:144-731
               
               
               Cow position:chr12:5539596-5540197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:390
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:144-747
               
               
               Cow position:chr12:6441226-6441866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:422
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:144-822
               
               
               Cow position:chr12:10487052-10486377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:443
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):7, 119

               
               
               Conread position:144-834
               
               
               Cow position:chr12:41288929-41288222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:458
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:145-337
               
               
               Cow position:chr12:18116025-18115819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-389
               
               
               Cow position:chr12:28708000-28708263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-522
               
               
               Cow position:chr12:13042615-13043026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:286
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-747
               
               
               Cow position:chr12:15939256-15939890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:145-825
               
               
               Cow position:chr12:21075442-21074731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 7

               
               
               Conread position:146-298
               
               
               Cow position:chr12:40270982-40271144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:146-522
               
               
               Cow position:chr12:3070488-3070073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):13, 141

               
               
               Conread position:146-745
               
               
               Cow position:chr12:3181035-3180389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 567

               
               
               Conread position:146-824
               
               
               Cow position:chr12:23378742-23378051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 10

               
               
               Conread position:146-834
               
               
               Cow position:chr12:249695-250428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 341

               
               
               Conread position:147-300
               
               
               Cow position:chr12:19693594-19693758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-302
               
               
               Cow position:chr12:42060603-42060436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 134

               
               
               Conread position:147-334
               
               
               Cow position:chr12:20312780-20312976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 140

               
               
               Conread position:147-381
               
               
               Cow position:chr12:29909407-29909656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 166

               
               
               Conread position:147-405
               
               
               Cow position:chr12:21723739-21723451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-520
               
               
               Cow position:chr12:6186526-6186929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):12, 94

               
               
               Conread position:147-611
               
               
               Cow position:chr12:29427355-29427856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:327
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 166

               
               
               Conread position:147-660
               
               
               Cow position:chr12:5226855-5226309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 415

               
               
               Conread position:147-765
               
               
               Cow position:chr12:9988075-9988734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 125

               
               
               Conread position:147-822
               
               
               Cow position:chr12:12754541-12755258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 155

               
               
               Conread position:148-579
               
               
               Cow position:chr12:12177614-12178080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:327
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):11, 51

               
               
               Conread position:148-580
               
               
               Cow position:chr12:31328706-31329183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:320
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-732
               
               
               Cow position:chr12:25313090-25313727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 40

               
               
               Conread position:150-410
               
               
               Cow position:chr12:5905144-5904866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):74, 8

               
               
               Conread position:150-768
               
               
               Cow position:chr12:15231646-15230978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 14

               
               
               Conread position:153-825
               
               
               Cow position:chr12:8626888-8626204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:424
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):6, 127

               
               
               Conread position:158-373
               
               
               Cow position:chr12:3545265-3545028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-377
               
               
               Cow position:chr12:44758036-44757795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr12:464997-465243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr12:4965224-4965466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr12:6404174-6404420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr12:7651227-7651467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 53

               
               
               Conread position:158-382
               
               
               Cow position:chr12:8770374-8770129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr12:26333334-26333088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr12:32700378-32700132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-410
               
               
               Cow position:chr12:5273755-5274030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:158-410
               
               
               Cow position:chr12:14940578-14940299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-410
               
               
               Cow position:chr12:30593495-30593772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-444
               
               
               Cow position:chr12:31533230-31533546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):66, 166

               
               
               Conread position:158-453
               
               
               Cow position:chr12:1855246-1855572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):64, 312

               
               
               Conread position:158-453
               
               
               Cow position:chr12:10790633-10790960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-523
               
               
               Cow position:chr12:1093514-1093116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):64, 113

               
               
               Conread position:158-540
               
               
               Cow position:chr12:36445998-36445580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:281
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-551
               
               
               Cow position:chr12:34177168-34176737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:292
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-559
               
               
               Cow position:chr12:21432955-21432515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):64, 330

               
               
               Conread position:158-581
               
               
               Cow position:chr12:15719957-15720416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:306
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):64, 456

               
               
               Conread position:158-611
               
               
               Cow position:chr12:22979280-22979778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:335
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):64, 381

               
               
               Conread position:158-615
               
               
               Cow position:chr12:41973162-41973665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:341
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):66, 51

               
               
               Conread position:158-645
               
               
               Cow position:chr12:14423970-14423428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:360
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:158-645
               
               
               Cow position:chr12:21212397-21211862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:359
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):62, 233

               
               
               Conread position:158-645
               
               
               Cow position:chr12:22517236-22517773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:355
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):65, 322

               
               
               Conread position:158-655
               
               
               Cow position:chr12:21452364-21452908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 530

               
               
               Conread position:158-693
               
               
               Cow position:chr12:28012618-28013207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-709
               
               
               Cow position:chr12:5110454-5111051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:158-720
               
               
               Cow position:chr12:43681616-43681003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 42

               
               
               Conread position:158-754
               
               
               Cow position:chr12:15925140-15925787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 343

               
               
               Conread position:158-766
               
               
               Cow position:chr12:8839867-8839205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 596

               
               
               Conread position:158-804
               
               
               Cow position:chr12:21250701-21251397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 323

               
               
               Conread position:158-813
               
               
               Cow position:chr12:5713575-5712868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:526
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 590

               
               
               Conread position:158-819
               
               
               Cow position:chr12:32011164-32011882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 596

               
               
               Conread position:158-825
               
               
               Cow position:chr12:12928297-12929012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 379

               
               
               Conread position:158-825
               
               
               Cow position:chr12:14568211-14568921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 281

               
               
               Conread position:158-825
               
               
               Cow position:chr12:22748829-22748108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 344

               
               
               Conread position:158-825
               
               
               Cow position:chr12:35367990-35367299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 12

               
               
               Conread position:158-825
               
               
               Cow position:chr12:37562613-37561902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 220

               
               
               Conread position:158-829
               
               
               Cow position:chr12:25148005-25148727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-829
               
               
               Cow position:chr12:32758309-32757587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-831
               
               
               Cow position:chr12:21611209-21610481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 22

               
               
               Conread position:158-834
               
               
               Cow position:chr12:1007629-1006900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 588

               
               
               Conread position:158-834
               
               
               Cow position:chr12:1406060-1405335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 333

               
               
               Conread position:158-834
               
               
               Cow position:chr12:1511152-1511879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 183

               
               
               Conread position:158-834
               
               
               Cow position:chr12:17718909-17718185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 40

               
               
               Conread position:158-834
               
               
               Cow position:chr12:21665751-21665021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 597

               
               
               Conread position:158-834
               
               
               Cow position:chr12:31027207-31027936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 388

               
               
               Conread position:158-834
               
               
               Cow position:chr12:35163396-35162648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 580

               
               
               Conread position:158-834
               
               
               Cow position:chr12:38893976-38893247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 115

               
               
               Conread position:158-834
               
               
               Cow position:chr12:39930778-39930053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 591

               
               
               Conread position:159-387
               
               
               Cow position:chr12:22450975-22450736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):66, 57

               
               
               Conread position:159-736
               
               
               Cow position:chr12:36287399-36288030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 383

               
               
               Conread position:159-829
               
               
               Cow position:chr12:10359306-10358586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 90

               
               
               Conread position:160-387
               
               
               Cow position:chr12:19851699-19851457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 196

               
               
               Conread position:160-429
               
               
               Cow position:chr12:22286324-22286623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:160-453
               
               
               Cow position:chr12:21557558-21557233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):59, 208

               
               
               Conread position:160-501
               
               
               Cow position:chr12:19873167-19872821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 33

               
               
               Conread position:160-512
               
               
               Cow position:chr12:3364498-3364112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:260
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-635
               
               
               Cow position:chr12:33297240-33296721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:358
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):66, 106

               
               
               Conread position:160-822
               
               
               Cow position:chr12:25143144-25143816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:435
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):179, 65

               
               
               Conread position:160-825
               
               
               Cow position:chr12:22594363-22593650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 220

               
               
               Conread position:160-825
               
               
               Cow position:chr12:28763404-28764105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 222

               
               
               Conread position:160-860
               
               
               Cow position:chr12:35311321-35312036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 34

               
               
               Conread position:161-382
               
               
               Cow position:chr12:20218106-20217862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:161-824
               
               
               Cow position:chr12:19198626-19197943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:533
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 123

               
               
               Conread position:161-829
               
               
               Cow position:chr12:42855943-42856640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 169

               
               
               Conread position:161-834
               
               
               Cow position:chr12:27994709-27993985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 37

               
               
               Conread position:162-374
               
               
               Cow position:chr12:551004-551238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:164-834
               
               
               Cow position:chr12:1774300-1775032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 85

               
               
               Conread position:166-382
               
               
               Cow position:chr12:4004300-4004537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):57, 207

               
               
               Conread position:167-456
               
               
               Cow position:chr12:21946579-21946274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):98, 58

               
               
               Conread position:169-410
               
               
               Cow position:chr12:44766434-44766165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:169-831
               
               
               Cow position:chr12:32220705-32219985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 600

               
               
               Conread position:171-720
               
               
               Cow position:chr12:16301738-16302340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 576

               
               
               Conread position:171-819
               
               
               Cow position:chr12:1173420-1174108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:444
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):5, 111

               
               
               Conread position:171-834
               
               
               Cow position:chr12:30502229-30501525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 171

               
               
               Conread position:172-831
               
               
               Cow position:chr12:17663549-17662862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 265

               
               
               Conread position:174-382
               
               
               Cow position:chr12:40514716-40514484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:175-825
               
               
               Cow position:chr12:8642342-8641672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:176-834
               
               
               Cow position:chr12:17969561-17968873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:465
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):15, 96

               
               
               Conread position:177-778
               
               
               Cow position:chr12:48416149-48416804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 318

               
               
               Conread position:184-540
               
               
               Cow position:chr12:26869666-26870063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):40, 5

               
               
               Conread position:188-480
               
               
               Cow position:chr12:10988937-10988617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):34, 87

               
               
               Conread position:189-808
               
               
               Cow position:chr12:32849144-32848487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 225

               
               
               Conread position:189-814
               
               
               Cow position:chr12:18586254-18585577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 243

               
               
               Conread position:189-834
               
               
               Cow position:chr12:20459140-20459834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 271

               
               
               Conread position:208-829
               
               
               Cow position:chr12:6105814-6106456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 96

               
               
               Conread position:221-834
               
               
               Cow position:chr12:5107600-5106942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 524

               
               
               Conread position:221-834
               
               
               Cow position:chr12:32657088-32656439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 20

               
               
               Conread position:221-834
               
               
               Cow position:chr12:35547593-35548242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 140

               
               
               Conread position:223-540
               
               
               Cow position:chr12:24206070-24205728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:236-645
               
               
               Cow position:chr12:6954838-6954419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:290
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):54, 218

               
               
               Conread position:239-834
               
               
               Cow position:chr12:21313916-21314545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 282

               
               
               Conread position:243-692
               
               
               Cow position:chr12:259248-258755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:333
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:243-804
               
               
               Cow position:chr12:42798499-42797925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:373
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):40, 79

               
               
               Conread position:245-551
               
               
               Cow position:chr12:19495881-19496192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):168, 43

               
               
               Conread position:257-580
               
               
               Cow position:chr12:7885392-7885740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):79, 43

               
               
               Conread position:260-834
               
               
               Cow position:chr12:20994274-20994874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 29

               
               
               Conread position:269-823
               
               
               Cow position:chr12:19871699-19871110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 432

               
               
               Conread position:269-825
               
               
               Cow position:chr12:30687226-30686634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 425

               
               
               Conread position:270-764
               
               
               Cow position:chr12:19972227-19971718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:331
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):16, 96

               
               
               Conread position:273-807
               
               
               Cow position:chr12:36340975-36341527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:351
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:277-629
               
               
               Cow position:chr12:36568868-36569249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):10, 371

               
               
               Conread position:277-815
               
               
               Cow position:chr12:36370873-36371423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:347
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 30

               
               
               Conread position:279-626
               
               
               Cow position:chr12:36213751-36213376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):61, 23

               
               
               Conread position:279-807
               
               
               Cow position:chr12:36453091-36453639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:345
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):60, 28

               
               
               Conread position:282-818
               
               
               Cow position:chr12:23159045-23159611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 6

               
               
               Conread position:285-834
               
               
               Cow position:chr12:3094154-3094738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 453

               
               
               Conread position:289-830
               
               
               Cow position:chr12:47803617-47803065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 91

               
               
               Conread position:290-822
               
               
               Cow position:chr12:1476199-1476762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 216

               
               
               Conread position:290-825
               
               
               Cow position:chr12:21904820-21904264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 474

               
               
               Conread position:290-831
               
               
               Cow position:chr12:8774127-8773553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 244

               
               
               Conread position:292-734
               
               
               Cow position:chr12:33925236-33925713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:321
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):47, 437

               
               
               Conread position:292-834
               
               
               Cow position:chr12:61746-62323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 443

               
               
               Conread position:297-825
               
               
               Cow position:chr12:32285328-32284794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:344
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):42, 109

               
               
               Conread position:300-709
               
               
               Cow position:chr12:31828996-31829440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:296
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):39, 429

               
               
               Conread position:301-815
               
               
               Cow position:chr12:21484854-21484316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 92

               
               
               Conread position:311-645
               
               
               Cow position:chr12:21888600-21888964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:316-808
               
               
               Cow position:chr12:21130463-21129961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:331
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):23, 15

               
               
               Conread position:322-849
               
               
               Cow position:chr12:20847563-20847006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 42

               
               
               Conread position:334-785
               
               
               Cow position:chr12:21862022-21862494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:320
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):48, 81

               
               
               Conread position:336-580
               
               
               Cow position:chr12:7961333-7961594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):44, 181

               
               
               Conread position:336-692
               
               
               Cow position:chr12:32339843-32340231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):49, 144

               
               
               Conread position:340-522
               
               
               Cow position:chr12:39283107-39283302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:349-768
               
               
               Cow position:chr12:15797315-15796901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:292
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):39, 130

               
               
               Conread position:353-834
               
               
               Cow position:chr12:27929395-27929907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 376

               
               
               Conread position:371-834
               
               
               Cow position:chr12:34176734-34176249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 351

               
               
               Conread position:374-834
               
               
               Cow position:chr12:1408188-1407716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:311
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):30, 187

               
               
               Conread position:385-825
               
               
               Cow position:chr12:8627857-8628300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:284
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):29, 111

               
               
               Conread position:388-830
               
               
               Cow position:chr12:42232666-42232199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 340

               
               
               Conread position:388-834
               
               
               Cow position:chr12:8674710-8675179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:311
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):27, 326

               
               
               Conread position:414-765
               
               
               Cow position:chr12:23520836-23521209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):28, 311

               
               
               Conread position:414-834
               
               
               Cow position:chr12:21202113-21201695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 41

               
               
               Conread position:422-834
               
               
               Cow position:chr12:1438227-1437813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:292
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):9, 22

               
               
               Conread position:427-813
               
               
               Cow position:chr12:19040927-19040519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 245

               
               
               Conread position:427-835
               
               
               Cow position:chr12:45145365-45144941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 49

               
               
               Conread position:428-822
               
               
               Cow position:chr12:27852630-27853049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):48, 298

               
               
               Conread position:431-834
               
               
               Cow position:chr12:551506-551930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 292

               
               
               Conread position:436-825
               
               
               Cow position:chr12:542119-542522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 14

               
               
               Conread position:490-834
               
               
               Cow position:chr12:32986762-32986420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:491-708
               
               
               Cow position:chr12:29128116-29128351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 221

               
               
               Conread position:491-736
               
               
               Cow position:chr12:23511931-23512196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):34, 217

               
               
               Conread position:491-746
               
               
               Cow position:chr12:21303675-21303401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 222

               
               
               Conread position:491-767
               
               
               Cow position:chr12:5776883-5777178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-820
               
               
               Cow position:chr12:27614662-27614314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 228

               
               
               Conread position:491-824
               
               
               Cow position:chr12:21391778-21392129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):38, 28

               
               
               Conread position:491-831
               
               
               Cow position:chr12:19861916-19861574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 80

               
               
               Conread position:491-834
               
               
               Cow position:chr12:5327664-5328025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:491-834
               
               
               Cow position:chr12:35161855-35161492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 195

               
               
               Conread position:494-834
               
               
               Cow position:chr12:1491410-1491051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 225

               
               
               Conread position:495-815
               
               
               Cow position:chr12:22566277-22565941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):29, 218

               
               
               Conread position:507-834
               
               
               Cow position:chr12:1886140-1886467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):139, 27

               
               
               Conread position:512-834
               
               
               Cow position:chr12:32066774-32066449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:514-825
               
               
               Cow position:chr12:13259628-13259314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):37, 21

               
               
               Conread position:536-824
               
               
               Cow position:chr12:26870499-26870202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):37, 12

               
               
               Conread position:541-820
               
               
               Cow position:chr12:1108225-1107941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):18, 71

               
               
               Conread position:545-829
               
               
               Cow position:chr12:24696728-24696437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:213
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):30, 164

               
               
               Conread position:547-818
               
               
               Cow position:chr12:21946215-21945943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):99, 35

               
               
               Conread position:550-834
               
               
               Cow position:chr12:3364117-3363828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):97, 157

               
               
               Conread position:552-830
               
               
               Cow position:chr12:10445561-10445299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):29, 96

               
               
               Conread position:568-815
               
               
               Cow position:chr12:21658959-21658716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):24, 11

               
               
               Conread position:569-756
               
               
               Cow position:chr12:15695556-15695748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):68, 49

               
               
               Conread position:569-765
               
               
               Cow position:chr12:35473381-35473582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-834
               
               
               Cow position:chr12:24992668-24992938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-834
               
               
               Cow position:chr12:46163894-46163624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:570-834
               
               
               Cow position:chr12:42194788-42194519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):77, 135

               
               
               Conread position:591-834
               
               
               Cow position:chr12:536436-536684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-834
               
               
               Cow position:chr12:31329486-31329732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):46, 80

               
               
               Conread position:593-832
               
               
               Cow position:chr12:47168257-47168016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):48, 88

               
               
               Conread position:601-834
               
               
               Cow position:chr12:1469002-1469240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):36, 104

               
               
               Conread position:609-825
               
               
               Cow position:chr12:22479881-22480102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):37, 98

               
               
               Conread position:640-834
               
               
               Cow position:chr12:22517832-22518027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):21, 54

               
               
               Conread position:643-834
               
               
               Cow position:chr12:21211823-21211633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:645-818
               
               
               Cow position:chr12:36213329-36213157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:645-834
               
               
               Cow position:chr12:36405595-36405783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:667-795
               
               
               Cow position:chr12:41595058-41594931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:671-832
               
               
               Cow position:chr12:40538556-40538713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:677-834
               
               
               Cow position:chr12:15539839-15539683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:698-807
               
               
               Cow position:chr12:30705206-30705097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:701-825
               
               
               Cow position:chr12:11541355-11541477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):107, 33

               
               
               Conread position:701-834
               
               
               Cow position:chr12:21430981-21430848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:711-834
               
               
               Cow position:chr12:25260505-25260628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-834
               
               
               Cow position:chr13:34508238-34509146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:914
               
               
               Alignm identity:616
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 126

               
               
               Conread position:23-387
               
               
               Cow position:chr13:46597596-46597987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):26, 90

               
               
               Conread position:62-816
               
               
               Cow position:chr13:29054910-29055734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:830
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 50

               
               
               Conread position:63-572
               
               
               Cow position:chr13:52775972-52776504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:346
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:70-817
               
               
               Cow position:chr13:61954749-61953936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:816
               
               
               Alignm identity:553
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 37

               
               
               Conread position:73-382
               
               
               Cow position:chr13:6552962-6553302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):32, 337

               
               
               Conread position:73-382
               
               
               Cow position:chr13:30794298-30794621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):149, 34

               
               
               Conread position:73-387
               
               
               Cow position:chr13:6418042-6417696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:73-457
               
               
               Cow position:chr13:3650799-3651212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:289
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:73-644
               
               
               Cow position:chr13:9049106-9048466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:428
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 39

               
               
               Conread position:73-727
               
               
               Cow position:chr13:55338242-55337526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:73-815
               
               
               Cow position:chr13:32793835-32794641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:813
               
               
               Alignm identity:548
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 27

               
               
               Conread position:73-831
               
               
               Cow position:chr13:3015683-3014857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:835
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 213

               
               
               Conread position:73-831
               
               
               Cow position:chr13:34762528-34763321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:818
               
               
               Alignm identity:533
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 224

               
               
               Conread position:73-834
               
               
               Cow position:chr13:20563473-20564307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:840
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 27

               
               
               Conread position:73-834
               
               
               Cow position:chr13:28132010-28131182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:832
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-835
               
               
               Cow position:chr13:50189567-50190396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:835
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:74-705
               
               
               Cow position:chr13:18815228-18815898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:424
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):106, 27

               
               
               Conread position:75-822
               
               
               Cow position:chr13:11302663-11301889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:790
               
               
               Alignm identity:480
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):65, 23

               
               
               Conread position:75-834
               
               
               Cow position:chr13:21836792-21837621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:834
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 32

               
               
               Conread position:80-648
               
               
               Cow position:chr13:34190728-34190113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:95-402
               
               
               Cow position:chr13:3163022-3163358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):53, 33

               
               
               Conread position:118-382
               
               
               Cow position:chr13:60489743-60489457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:122-834
               
               
               Cow position:chr13:34871403-34870635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:772
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:122-849
               
               
               Cow position:chr13:34905150-34905914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:773
               
               
               Alignm identity:527
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 75

               
               
               Conread position:123-373
               
               
               Cow position:chr13:53574550-53574820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 36

               
               
               Conread position:128-834
               
               
               Cow position:chr13:1590716-1591478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:766
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 632

               
               
               Conread position:137-365
               
               
               Cow position:chr13:46428365-46428116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:139-308
               
               
               Cow position:chr13:30651738-30651904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):9, 50

               
               
               Conread position:139-468
               
               
               Cow position:chr13:12978122-12978483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):13, 294

               
               
               Conread position:142-376
               
               
               Cow position:chr13:20175850-20176097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 14

               
               
               Conread position:142-819
               
               
               Cow position:chr13:30468698-30469424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:142-834
               
               
               Cow position:chr13:34052046-34051306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:543
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 611

               
               
               Conread position:143-295
               
               
               Cow position:chr13:13177000-13177160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-358
               
               
               Cow position:chr13:28683924-28684151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):79, 9

               
               
               Conread position:143-364
               
               
               Cow position:chr13:1155136-1154900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr13:3430158-3429898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr13:32550163-32549929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-382
               
               
               Cow position:chr13:33466839-33466579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-398
               
               
               Cow position:chr13:43119855-43120135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:143-436
               
               
               Cow position:chr13:47007167-47006848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-452
               
               
               Cow position:chr13:36346572-36346901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-453
               
               
               Cow position:chr13:2800303-2799962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-466
               
               
               Cow position:chr13:3143797-3144140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):87, 13

               
               
               Conread position:143-473
               
               
               Cow position:chr13:30505028-30505382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-503
               
               
               Cow position:chr13:28171606-28171993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:255
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:143-517
               
               
               Cow position:chr13:41807322-41807711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:278
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-522
               
               
               Cow position:chr13:28413872-28414282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:285
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:143-528
               
               
               Cow position:chr13:31580243-31579843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:279
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):87, 13

               
               
               Conread position:143-548
               
               
               Cow position:chr13:9537656-9537218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-561
               
               
               Cow position:chr13:28130607-28131058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:307
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:143-571
               
               
               Cow position:chr13:49805538-49805994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:143-636
               
               
               Cow position:chr13:42114589-42115115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:362
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-692
               
               
               Cow position:chr13:645343-644754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-695
               
               
               Cow position:chr13:56692689-56692084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-698
               
               
               Cow position:chr13:20778048-20778646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-720
               
               
               Cow position:chr13:837988-838617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-803
               
               
               Cow position:chr13:50079148-50079859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-806
               
               
               Cow position:chr13:26204040-26204754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-815
               
               
               Cow position:chr13:3556830-3556107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-815
               
               
               Cow position:chr13:39911815-39911100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-819
               
               
               Cow position:chr13:18329706-18330434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-824
               
               
               Cow position:chr13:3315042-3314314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-825
               
               
               Cow position:chr13:4487272-4486538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:143-829
               
               
               Cow position:chr13:6664709-6665446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-833
               
               
               Cow position:chr13:17496479-17495764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:527
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr13:36937139-36936408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:143-834
               
               
               Cow position:chr13:38612633-38611900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr13:43974539-43975267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr13:50112885-50112142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr13:53052255-53051512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr13:53156970-53157713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:143-834
               
               
               Cow position:chr13:60646166-60646909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:144-410
               
               
               Cow position:chr13:32905469-32905758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:144-480
               
               
               Cow position:chr13:1839990-1840359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 12

               
               
               Conread position:144-705
               
               
               Cow position:chr13:11129833-11130398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:379
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:144-815
               
               
               Cow position:chr13:5717277-5717962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:451
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):87, 9

               
               
               Conread position:145-548
               
               
               Cow position:chr13:21135149-21134709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-580
               
               
               Cow position:chr13:15280705-15280226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:335
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):6, 16

               
               
               Conread position:145-645
               
               
               Cow position:chr13:5498388-5498932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-825
               
               
               Cow position:chr13:42086716-42087443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 14

               
               
               Conread position:145-832
               
               
               Cow position:chr13:22906856-22907592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:537
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:145-834
               
               
               Cow position:chr13:15921043-15921781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:146-382
               
               
               Cow position:chr13:7365872-7365613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:146-834
               
               
               Cow position:chr13:20538153-20538869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 127

               
               
               Conread position:147-337
               
               
               Cow position:chr13:33332948-33333157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-357
               
               
               Cow position:chr13:24690866-24691098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-522
               
               
               Cow position:chr13:11821893-11822271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):12, 207

               
               
               Conread position:147-580
               
               
               Cow position:chr13:4664034-4663561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 97

               
               
               Conread position:147-644
               
               
               Cow position:chr13:33162365-33161812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 204

               
               
               Conread position:147-718
               
               
               Cow position:chr13:22085186-22084568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 330

               
               
               Conread position:147-728
               
               
               Cow position:chr13:32921896-32922533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 427

               
               
               Conread position:147-739
               
               
               Cow position:chr13:11826366-11826980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:147-744
               
               
               Cow position:chr13:55406114-55405482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:401
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 43

               
               
               Conread position:147-765
               
               
               Cow position:chr13:5622324-5622954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 86

               
               
               Conread position:147-793
               
               
               Cow position:chr13:3784548-3783854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 337

               
               
               Conread position:147-815
               
               
               Cow position:chr13:34299007-34298277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 608

               
               
               Conread position:147-825
               
               
               Cow position:chr13:14302570-14303298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 461

               
               
               Conread position:147-829
               
               
               Cow position:chr13:13903272-13902539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 122

               
               
               Conread position:147-834
               
               
               Cow position:chr13:4944807-4944066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 146

               
               
               Conread position:147-834
               
               
               Cow position:chr13:14399658-14400401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 597

               
               
               Conread position:147-834
               
               
               Cow position:chr13:31608021-31608763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 131

               
               
               Conread position:147-834
               
               
               Cow position:chr13:35760957-35760233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 130

               
               
               Conread position:147-834
               
               
               Cow position:chr13:47357190-47357898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:537
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 53

               
               
               Conread position:147-835
               
               
               Cow position:chr13:23266416-23267155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 55

               
               
               Conread position:148-436
               
               
               Cow position:chr13:50680935-50680623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-453
               
               
               Cow position:chr13:34038143-34038480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-458
               
               
               Cow position:chr13:60219507-60219179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 283

               
               
               Conread position:148-594
               
               
               Cow position:chr13:32166742-32166272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:310
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 111

               
               
               Conread position:148-834
               
               
               Cow position:chr13:32733775-32734510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 603

               
               
               Conread position:149-467
               
               
               Cow position:chr13:19638853-19638504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):10, 180

               
               
               Conread position:150-381
               
               
               Cow position:chr13:26098722-26098972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):75, 8

               
               
               Conread position:150-522
               
               
               Cow position:chr13:48627950-48627558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:150-824
               
               
               Cow position:chr13:11795291-11796013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 311

               
               
               Conread position:150-834
               
               
               Cow position:chr13:21402215-21401522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 9

               
               
               Conread position:150-834
               
               
               Cow position:chr13:44323558-44324287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:546
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 8

               
               
               Conread position:153-548
               
               
               Cow position:chr13:13313000-13312568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:153-786
               
               
               Cow position:chr13:57027638-57026982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:414
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):73, 272

               
               
               Conread position:154-834
               
               
               Cow position:chr13:18945121-18945841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:461
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):5, 492

               
               
               Conread position:156-364
               
               
               Cow position:chr13:12404076-12403844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:156-825
               
               
               Cow position:chr13:16248538-16249253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 593

               
               
               Conread position:157-358
               
               
               Cow position:chr13:19565302-19565525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:157-823
               
               
               Cow position:chr13:20571315-20572024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 64

               
               
               Conread position:158-341
               
               
               Cow position:chr13:30694607-30694803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:158-367
               
               
               Cow position:chr13:12389973-12390204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr13:15538581-15538827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr13:20472854-20473100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr13:36673072-36672830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr13:40300342-40300588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-439
               
               
               Cow position:chr13:14590108-14590421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-446
               
               
               Cow position:chr13:55573854-55574172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):64, 303

               
               
               Conread position:158-448
               
               
               Cow position:chr13:6869708-6869391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr13:4615411-4615089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):64, 159

               
               
               Conread position:158-455
               
               
               Cow position:chr13:47023294-47023623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-456
               
               
               Cow position:chr13:43594235-43593904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:158-463
               
               
               Cow position:chr13:25825586-25825919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):57, 161

               
               
               Conread position:158-480
               
               
               Cow position:chr13:34941073-34940731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):66, 333

               
               
               Conread position:158-509
               
               
               Cow position:chr13:46736782-46737153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):39, 106

               
               
               Conread position:158-522
               
               
               Cow position:chr13:6343287-6342889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:278
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:158-528
               
               
               Cow position:chr13:7870159-7870562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:277
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):64, 341

               
               
               Conread position:158-535
               
               
               Cow position:chr13:43892226-43891816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-548
               
               
               Cow position:chr13:21107722-21108127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 164

               
               
               Conread position:158-580
               
               
               Cow position:chr13:35540806-35540345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:317
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):64, 326

               
               
               Conread position:158-580
               
               
               Cow position:chr13:51298083-51298549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:313
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-631
               
               
               Cow position:chr13:38897706-38897198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:344
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):67, 132

               
               
               Conread position:158-632
               
               
               Cow position:chr13:12618508-12618007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 58

               
               
               Conread position:158-644
               
               
               Cow position:chr13:38013261-38013779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 29

               
               
               Conread position:158-720
               
               
               Cow position:chr13:2725402-2726020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 592

               
               
               Conread position:158-744
               
               
               Cow position:chr13:8782291-8781674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 65

               
               
               Conread position:158-744
               
               
               Cow position:chr13:46056347-46055709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 560

               
               
               Conread position:158-771
               
               
               Cow position:chr13:13126324-13126968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 29

               
               
               Conread position:158-797
               
               
               Cow position:chr13:3656949-3657637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 591

               
               
               Conread position:158-808
               
               
               Cow position:chr13:25882633-25881944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:442
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):68, 375

               
               
               Conread position:158-834
               
               
               Cow position:chr13:560983-561708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 593

               
               
               Conread position:158-834
               
               
               Cow position:chr13:3021080-3021809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr13:11390663-11389934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr13:13332542-13333278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 596

               
               
               Conread position:158-834
               
               
               Cow position:chr13:18121466-18122194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-834
               
               
               Cow position:chr13:24931415-24932114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 381

               
               
               Conread position:158-834
               
               
               Cow position:chr13:28700223-28699498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 40

               
               
               Conread position:158-834
               
               
               Cow position:chr13:31990273-31989553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 91

               
               
               Conread position:158-834
               
               
               Cow position:chr13:32081281-32080553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 276

               
               
               Conread position:158-834
               
               
               Cow position:chr13:33522551-33523278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 591

               
               
               Conread position:158-834
               
               
               Cow position:chr13:41337278-41337993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 251

               
               
               Conread position:158-834
               
               
               Cow position:chr13:49977075-49976346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr13:58313737-58313008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 595

               
               
               Conread position:159-410
               
               
               Cow position:chr13:51332480-51332204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:160-323
               
               
               Cow position:chr13:10859351-10859188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):131, 71

               
               
               Conread position:160-387
               
               
               Cow position:chr13:52077232-52076988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-398
               
               
               Cow position:chr13:19108536-19108780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 114

               
               
               Conread position:160-407
               
               
               Cow position:chr13:6616151-6615880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):62, 81

               
               
               Conread position:160-410
               
               
               Cow position:chr13:33500305-33500578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):48, 157

               
               
               Conread position:160-480
               
               
               Cow position:chr13:14716758-14716411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):62, 319

               
               
               Conread position:160-543
               
               
               Cow position:chr13:11822546-11822955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:299
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):65, 103

               
               
               Conread position:160-549
               
               
               Cow position:chr13:52251300-52250894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:160-640
               
               
               Cow position:chr13:24702997-24703517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:326
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):57, 115

               
               
               Conread position:160-644
               
               
               Cow position:chr13:11571277-11571797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:340
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):62, 38

               
               
               Conread position:160-685
               
               
               Cow position:chr13:6602058-6601506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:365
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):63, 15

               
               
               Conread position:160-685
               
               
               Cow position:chr13:24109684-24110235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:355
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):55, 199

               
               
               Conread position:160-765
               
               
               Cow position:chr13:34345705-34345049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 557

               
               
               Conread position:160-793
               
               
               Cow position:chr13:32773953-32774628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 376

               
               
               Conread position:160-804
               
               
               Cow position:chr13:30034943-30035604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:431
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):62, 141

               
               
               Conread position:160-805
               
               
               Cow position:chr13:681454-680756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 593

               
               
               Conread position:160-807
               
               
               Cow position:chr13:38599070-38599743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:439
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):45, 230

               
               
               Conread position:160-807
               
               
               Cow position:chr13:46463018-46462355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:426
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):61, 48

               
               
               Conread position:160-814
               
               
               Cow position:chr13:1882112-1882810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 20

               
               
               Conread position:160-834
               
               
               Cow position:chr13:14552249-14552944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:436
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):42, 191

               
               
               Conread position:161-522
               
               
               Cow position:chr13:15446635-15446998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 69

               
               
               Conread position:161-735
               
               
               Cow position:chr13:19102275-19102898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 582

               
               
               Conread position:161-778
               
               
               Cow position:chr13:17252569-17253210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:415
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):109, 19

               
               
               Conread position:162-410
               
               
               Cow position:chr13:30306815-30306541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):60, 180

               
               
               Conread position:163-834
               
               
               Cow position:chr13:21905512-21906238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:540
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 582

               
               
               Conread position:164-480
               
               
               Cow position:chr13:32817287-32817629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 77

               
               
               Conread position:164-523
               
               
               Cow position:chr13:54864343-54863959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 271

               
               
               Conread position:164-834
               
               
               Cow position:chr13:26822740-26823427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 77

               
               
               Conread position:165-480
               
               
               Cow position:chr13:42201538-42201880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):60, 53

               
               
               Conread position:165-824
               
               
               Cow position:chr13:5229576-5230280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 335

               
               
               Conread position:165-825
               
               
               Cow position:chr13:16807984-16807282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 95

               
               
               Conread position:167-479
               
               
               Cow position:chr13:12572048-12572391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:169-382
               
               
               Cow position:chr13:12991214-12991449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:170-804
               
               
               Cow position:chr13:34994346-34993685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 265

               
               
               Conread position:175-453
               
               
               Cow position:chr13:3786772-3786462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:175-645
               
               
               Cow position:chr13:60465626-60466144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:347
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:178-819
               
               
               Cow position:chr13:9301543-9300862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 266

               
               
               Conread position:180-462
               
               
               Cow position:chr13:45072690-45072392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 118

               
               
               Conread position:180-515
               
               
               Cow position:chr13:28449310-28449679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:189-382
               
               
               Cow position:chr13:35686577-35686362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:189-410
               
               
               Cow position:chr13:19322133-19322368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 17

               
               
               Conread position:189-452
               
               
               Cow position:chr13:49195322-49195028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:189-522
               
               
               Cow position:chr13:30241938-30241572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):37, 312

               
               
               Conread position:189-528
               
               
               Cow position:chr13:16344779-16345144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:259
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):36, 345

               
               
               Conread position:189-849
               
               
               Cow position:chr13:31510515-31509809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 347

               
               
               Conread position:208-469
               
               
               Cow position:chr13:47313348-47313636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:209-580
               
               
               Cow position:chr13:1461187-1461593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):27, 260

               
               
               Conread position:209-764
               
               
               Cow position:chr13:27540443-27539876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:355
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 310

               
               
               Conread position:214-693
               
               
               Cow position:chr13:42088142-42088642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:347
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):22, 208

               
               
               Conread position:221-470
               
               
               Cow position:chr13:15459025-15458774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):118, 47

               
               
               Conread position:221-644
               
               
               Cow position:chr13:33907430-33907882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):71, 270

               
               
               Conread position:221-782
               
               
               Cow position:chr13:6718832-6719436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 277

               
               
               Conread position:221-815
               
               
               Cow position:chr13:26986584-26987215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:410
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):11, 56

               
               
               Conread position:232-519
               
               
               Cow position:chr13:47189332-47189027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):56, 33

               
               
               Conread position:234-772
               
               
               Cow position:chr13:2804964-2805543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 7

               
               
               Conread position:235-474
               
               
               Cow position:chr13:24059645-24059385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):51, 247

               
               
               Conread position:240-823
               
               
               Cow position:chr13:9570702-9571316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 354

               
               
               Conread position:243-807
               
               
               Cow position:chr13:47570383-47569792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:375
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 283

               
               
               Conread position:243-823
               
               
               Cow position:chr13:22780679-22781291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 491

               
               
               Conread position:243-834
               
               
               Cow position:chr13:11254358-11254985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 172

               
               
               Conread position:260-811
               
               
               Cow position:chr13:60920502-60921054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 52

               
               
               Conread position:261-472
               
               
               Cow position:chr13:17456382-17456159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 98

               
               
               Conread position:267-815
               
               
               Cow position:chr13:34928435-34927863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:377
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):25, 103

               
               
               Conread position:269-808
               
               
               Cow position:chr13:21764614-21764057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:351
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):20, 55

               
               
               Conread position:269-835
               
               
               Cow position:chr13:19843738-19843159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 11

               
               
               Conread position:273-826
               
               
               Cow position:chr13:60426301-60425718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 15

               
               
               Conread position:277-745
               
               
               Cow position:chr13:25694739-25694263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:329
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):62, 111

               
               
               Conread position:277-834
               
               
               Cow position:chr13:34376262-34376850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 12

               
               
               Conread position:281-834
               
               
               Cow position:chr13:30652021-30652612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:392
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):58, 203

               
               
               Conread position:285-558
               
               
               Cow position:chr13:15257148-15256849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:288-610
               
               
               Cow position:chr13:52085043-52085392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):53, 222

               
               
               Conread position:289-623
               
               
               Cow position:chr13:19393868-19394226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 232

               
               
               Conread position:290-579
               
               
               Cow position:chr13:52859990-52860295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 49

               
               
               Conread position:290-806
               
               
               Cow position:chr13:54238193-54238740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 103

               
               
               Conread position:290-825
               
               
               Cow position:chr13:2137923-2138493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 445

               
               
               Conread position:291-581
               
               
               Cow position:chr13:48945691-48945997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):49, 102

               
               
               Conread position:291-795
               
               
               Cow position:chr13:47574317-47574842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 183

               
               
               Conread position:292-825
               
               
               Cow position:chr13:22276040-22275486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:373
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):47, 102

               
               
               Conread position:293-788
               
               
               Cow position:chr13:45933999-45933473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 438

               
               
               Conread position:302-726
               
               
               Cow position:chr13:58740812-58740361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:303
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 215

               
               
               Conread position:302-825
               
               
               Cow position:chr13:22715132-22714581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:379
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):37, 79

               
               
               Conread position:302-834
               
               
               Cow position:chr13:32955221-32955784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 430

               
               
               Conread position:302-834
               
               
               Cow position:chr13:32982162-32982725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 430

               
               
               Conread position:308-520
               
               
               Cow position:chr13:30431353-30431144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):31, 64

               
               
               Conread position:310-814
               
               
               Cow position:chr13:58718782-58718255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 108

               
               
               Conread position:311-835
               
               
               Cow position:chr13:7609379-7608822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 157

               
               
               Conread position:316-635
               
               
               Cow position:chr13:17277380-17277039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):21, 110

               
               
               Conread position:317-802
               
               
               Cow position:chr13:15429716-15430207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 125

               
               
               Conread position:341-808
               
               
               Cow position:chr13:25891559-25891065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:326
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):83, 71

               
               
               Conread position:342-718
               
               
               Cow position:chr13:18097423-18097830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:285
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):47, 385

               
               
               Conread position:342-834
               
               
               Cow position:chr13:3001152-3001674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 70

               
               
               Conread position:345-823
               
               
               Cow position:chr13:18761065-18761575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 384

               
               
               Conread position:345-832
               
               
               Cow position:chr13:10733174-10732665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:331
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 128

               
               
               Conread position:347-801
               
               
               Cow position:chr13:34332880-34332403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:315
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):43, 316

               
               
               Conread position:348-834
               
               
               Cow position:chr13:17318185-17318697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 105

               
               
               Conread position:351-804
               
               
               Cow position:chr13:1442581-1442101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:322
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:352-818
               
               
               Cow position:chr13:14522497-14522972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:313
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):37, 140

               
               
               Conread position:352-825
               
               
               Cow position:chr13:31730382-31730886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 379

               
               
               Conread position:353-736
               
               
               Cow position:chr13:504522-504108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:285
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):32, 372

               
               
               Conread position:361-644
               
               
               Cow position:chr13:46427900-46427592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:364-823
               
               
               Cow position:chr13:29791497-29791034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:301
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):25, 121

               
               
               Conread position:364-834
               
               
               Cow position:chr13:19240069-19239584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 229

               
               
               Conread position:368-833
               
               
               Cow position:chr13:53574906-53575392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 74

               
               
               Conread position:374-796
               
               
               Cow position:chr13:19450520-19450067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:291
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):75, 335

               
               
               Conread position:386-825
               
               
               Cow position:chr13:32549903-32549445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 94

               
               
               Conread position:386-834
               
               
               Cow position:chr13:19566871-19566396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 21

               
               
               Conread position:412-754
               
               
               Cow position:chr13:47577713-47577350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 305

               
               
               Conread position:414-551
               
               
               Cow position:chr13:42250374-42250519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:414-782
               
               
               Cow position:chr13:52459042-52459430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:277
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):46, 104

               
               
               Conread position:421-825
               
               
               Cow position:chr13:32253240-32253666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr13:14411060-14411495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr13:28526200-28526633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 84

               
               
               Conread position:421-834
               
               
               Cow position:chr13:34321870-34322289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:294
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):58, 159

               
               
               Conread position:426-815
               
               
               Cow position:chr13:43120444-43120853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 295

               
               
               Conread position:427-834
               
               
               Cow position:chr13:8068098-8068526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 294

               
               
               Conread position:428-834
               
               
               Cow position:chr13:6441942-6441522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):59, 277

               
               
               Conread position:430-736
               
               
               Cow position:chr13:47006795-47006474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):49, 197

               
               
               Conread position:431-834
               
               
               Cow position:chr13:30306286-30305862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 292

               
               
               Conread position:432-645
               
               
               Cow position:chr13:36351928-36351700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):46, 189

               
               
               Conread position:432-817
               
               
               Cow position:chr13:26080905-26080496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):54, 81

               
               
               Conread position:436-804
               
               
               Cow position:chr13:54067984-54067612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):60, 30

               
               
               Conread position:439-834
               
               
               Cow position:chr13:12565082-12565475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):71, 31

               
               
               Conread position:440-828
               
               
               Cow position:chr13:61978078-61977681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 155

               
               
               Conread position:445-834
               
               
               Cow position:chr13:20484250-20483840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:279
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):28, 125

               
               
               Conread position:446-834
               
               
               Cow position:chr13:6360949-6360543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 272

               
               
               Conread position:471-825
               
               
               Cow position:chr13:5261797-5261441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):44, 24

               
               
               Conread position:474-782
               
               
               Cow position:chr13:24237583-24237260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):50, 238

               
               
               Conread position:489-834
               
               
               Cow position:chr13:30794677-30795036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 221

               
               
               Conread position:491-765
               
               
               Cow position:chr13:11053276-11053566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):34, 190

               
               
               Conread position:491-778
               
               
               Cow position:chr13:17921475-17921786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:491-825
               
               
               Cow position:chr13:143081-143434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-829
               
               
               Cow position:chr13:34039303-34039660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):33, 230

               
               
               Conread position:491-834
               
               
               Cow position:chr13:3651406-3651767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 229

               
               
               Conread position:491-834
               
               
               Cow position:chr13:36347091-36347446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:505-834
               
               
               Cow position:chr13:19638166-19637829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:506-823
               
               
               Cow position:chr13:11169142-11169456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):9, 32

               
               
               Conread position:508-807
               
               
               Cow position:chr13:14182944-14183247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 27

               
               
               Conread position:508-825
               
               
               Cow position:chr13:3480884-3481199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):137, 33

               
               
               Conread position:514-762
               
               
               Cow position:chr13:46598291-46598546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 27

               
               
               Conread position:514-831
               
               
               Cow position:chr13:47537107-47536794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:521-819
               
               
               Cow position:chr13:41567182-41567491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):51, 20

               
               
               Conread position:521-825
               
               
               Cow position:chr13:34940659-34940355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:530-814
               
               
               Cow position:chr13:512794-513075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):14, 32

               
               
               Conread position:530-834
               
               
               Cow position:chr13:35686364-35686055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:542-825
               
               
               Cow position:chr13:19424604-19424314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):104, 24

               
               
               Conread position:545-793
               
               
               Cow position:chr13:42250556-42250811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 100

               
               
               Conread position:545-821
               
               
               Cow position:chr13:54106915-54107200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 161

               
               
               Conread position:569-796
               
               
               Cow position:chr13:9112721-9112489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):77, 136

               
               
               Conread position:569-807
               
               
               Cow position:chr13:28132423-28132180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-822
               
               
               Cow position:chr13:1142943-1142691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):77, 117

               
               
               Conread position:569-834
               
               
               Cow position:chr13:14737838-14737567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):77, 132

               
               
               Conread position:569-834
               
               
               Cow position:chr13:30241491-30241226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):51, 136

               
               
               Conread position:570-811
               
               
               Cow position:chr13:59403231-59403470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):97, 132

               
               
               Conread position:570-834
               
               
               Cow position:chr13:47728854-47729122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):77, 31

               
               
               Conread position:571-815
               
               
               Cow position:chr13:9536909-9537158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):77, 126

               
               
               Conread position:591-822
               
               
               Cow position:chr13:31725754-31725988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):57, 101

               
               
               Conread position:591-825
               
               
               Cow position:chr13:30243146-30242907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):57, 116

               
               
               Conread position:591-834
               
               
               Cow position:chr13:36672578-36672333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 111

               
               
               Conread position:605-835
               
               
               Cow position:chr13:46489031-46489266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):41, 66

               
               
               Conread position:609-834
               
               
               Cow position:chr13:35540078-35539848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:609-834
               
               
               Cow position:chr13:43160605-43160376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):14, 93

               
               
               Conread position:609-834
               
               
               Cow position:chr13:43592194-43591963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:610-834
               
               
               Cow position:chr13:15278907-15279133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:616-825
               
               
               Cow position:chr13:60697907-60698120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):32, 85

               
               
               Conread position:645-825
               
               
               Cow position:chr13:49748172-49747993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:645-834
               
               
               Cow position:chr13:30430835-30431021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:654-824
               
               
               Cow position:chr13:33929286-33929455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):9, 43

               
               
               Conread position:657-803
               
               
               Cow position:chr13:15560440-15560296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:664-804
               
               
               Cow position:chr13:33501351-33501490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):26, 14

               
               
               Conread position:672-834
               
               
               Cow position:chr13:2581268-2581429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):115, 25

               
               
               Conread position:698-834
               
               
               Cow position:chr13:51006211-51006347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:700-834
               
               
               Cow position:chr13:644162-644296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:704-834
               
               
               Cow position:chr13:46598783-46598914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:719-834
               
               
               Cow position:chr13:32922483-32922598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:729-832
               
               
               Cow position:chr13:19394249-19394352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-824
               
               
               Cow position:chr14:35420318-35419437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:896
               
               
               Alignm identity:605
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 124

               
               
               Conread position:27-834
               
               
               Cow position:chr14:46636153-46636986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:840
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 366

               
               
               Conread position:73-335
               
               
               Cow position:chr14:25779646-25779936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):71, 34

               
               
               Conread position:73-375
               
               
               Cow position:chr14:28103255-28103591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):21, 29

               
               
               Conread position:73-382
               
               
               Cow position:chr14:19323972-19324317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-410
               
               
               Cow position:chr14:13464710-13464339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):17, 39

               
               
               Conread position:73-452
               
               
               Cow position:chr14:40346636-40346208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):75, 28

               
               
               Conread position:73-463
               
               
               Cow position:chr14:38379825-38380245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:299
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):67, 10

               
               
               Conread position:73-467
               
               
               Cow position:chr14:403535-403098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):54, 34

               
               
               Conread position:73-467
               
               
               Cow position:chr14:5379534-5379093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:299
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-506
               
               
               Cow position:chr14:45300286-45299822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:317
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:73-549
               
               
               Cow position:chr14:17219684-17219169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:352
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):58, 25

               
               
               Conread position:73-585
               
               
               Cow position:chr14:28796210-28796772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 26

               
               
               Conread position:73-627
               
               
               Cow position:chr14:40246455-40247031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:380
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):149, 65

               
               
               Conread position:73-644
               
               
               Cow position:chr14:12834215-12833593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 59

               
               
               Conread position:73-753
               
               
               Cow position:chr14:8884517-8885253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:73-771
               
               
               Cow position:chr14:11461702-11462471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:772
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:73-788
               
               
               Cow position:chr14:35382124-35382884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 31

               
               
               Conread position:73-803
               
               
               Cow position:chr14:12613596-12612810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:794
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 34

               
               
               Conread position:73-813
               
               
               Cow position:chr14:13582232-13581444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:526
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:73-823
               
               
               Cow position:chr14:21390012-21390784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:808
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:73-825
               
               
               Cow position:chr14:13860173-13860986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:817
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 34

               
               
               Conread position:73-825
               
               
               Cow position:chr14:28350331-28351143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:816
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 36

               
               
               Conread position:73-834
               
               
               Cow position:chr14:5532716-5531886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:840
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:73-834
               
               
               Cow position:chr14:12546048-12545210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:842
               
               
               Alignm identity:611
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 94

               
               
               Conread position:74-834
               
               
               Cow position:chr14:21201285-21200467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:824
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 39

               
               
               Conread position:76-454
               
               
               Cow position:chr14:42154191-42153774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):64, 31

               
               
               Conread position:77-882
               
               
               Cow position:chr14:36709719-36710565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:855
               
               
               Alignm identity:548
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 24

               
               
               Conread position:93-453
               
               
               Cow position:chr14:46966936-46967319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):83, 15

               
               
               Conread position:114-834
               
               
               Cow position:chr14:44293938-44293181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:769
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 14

               
               
               Conread position:122-540
               
               
               Cow position:chr14:38391554-38391099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:304
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:123-622
               
               
               Cow position:chr14:13560452-13559925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 30

               
               
               Conread position:123-797
               
               
               Cow position:chr14:44890173-44889497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 579

               
               
               Conread position:123-825
               
               
               Cow position:chr14:41479052-41478304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:757
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 185

               
               
               Conread position:132-540
               
               
               Cow position:chr14:37444270-37443823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:137-528
               
               
               Cow position:chr14:17651248-17650827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:279
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):22, 10

               
               
               Conread position:142-382
               
               
               Cow position:chr14:5492010-5492271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):9, 18

               
               
               Conread position:142-410
               
               
               Cow position:chr14:13385994-13386287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:142-413
               
               
               Cow position:chr14:19957273-19956988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:142-452
               
               
               Cow position:chr14:50122315-50121974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:247
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:143-327
               
               
               Cow position:chr14:44076373-44076565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:143-336
               
               
               Cow position:chr14:36880378-36880586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-337
               
               
               Cow position:chr14:16996461-16996671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-337
               
               
               Cow position:chr14:47583353-47583142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-369
               
               
               Cow position:chr14:31733965-31733719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 18

               
               
               Conread position:143-369
               
               
               Cow position:chr14:44296703-44296950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-370
               
               
               Cow position:chr14:27844617-27844369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-375
               
               
               Cow position:chr14:29711793-29711540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr14:37227482-37227222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:143-399
               
               
               Cow position:chr14:30432783-30432506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-410
               
               
               Cow position:chr14:4991890-4992163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:143-410
               
               
               Cow position:chr14:16805858-16806151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr14:20467422-20467083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:143-453
               
               
               Cow position:chr14:45278475-45278137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-472
               
               
               Cow position:chr14:8495647-8495994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-480
               
               
               Cow position:chr14:40230009-40229648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 13

               
               
               Conread position:143-520
               
               
               Cow position:chr14:19318129-19317718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-520
               
               
               Cow position:chr14:41081353-41081764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-522
               
               
               Cow position:chr14:24895959-24895548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-540
               
               
               Cow position:chr14:34667564-34667994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:298
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-586
               
               
               Cow position:chr14:31737268-31736789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:327
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-645
               
               
               Cow position:chr14:33834719-33835270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-645
               
               
               Cow position:chr14:40483173-40483722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-685
               
               
               Cow position:chr14:28993064-28993654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-692
               
               
               Cow position:chr14:31156114-31155512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-764
               
               
               Cow position:chr14:24923071-24922399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-771
               
               
               Cow position:chr14:44026527-44027207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-818
               
               
               Cow position:chr14:43561454-43560767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 13

               
               
               Conread position:143-819
               
               
               Cow position:chr14:41716930-41717648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-824
               
               
               Cow position:chr14:40475432-40476140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr14:193438-192724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-825
               
               
               Cow position:chr14:2289536-2288808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-825
               
               
               Cow position:chr14:11150627-11151359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr14:12903622-12902884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:143-829
               
               
               Cow position:chr14:34906814-34906078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:143-834
               
               
               Cow position:chr14:10310848-10310101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:143-834
               
               
               Cow position:chr14:12739760-12740503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr14:13769007-13769745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr14:17690414-17689675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr14:31881600-31882342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr14:32583746-32584479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr14:34168587-34167848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr14:34675387-34674647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr14:41446293-41445551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr14:48251167-48251902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:143-834
               
               
               Cow position:chr14:50137557-50136818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:144-627
               
               
               Cow position:chr14:24990019-24990516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:331
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-645
               
               
               Cow position:chr14:9483235-9482691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:144-714
               
               
               Cow position:chr14:49995258-49995877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:144-747
               
               
               Cow position:chr14:14076374-14075745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:389
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:144-754
               
               
               Cow position:chr14:44367961-44367303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-765
               
               
               Cow position:chr14:39301753-39301083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 12

               
               
               Conread position:144-771
               
               
               Cow position:chr14:41798744-41798070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:422
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-808
               
               
               Cow position:chr14:7647411-7646697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 15

               
               
               Conread position:144-815
               
               
               Cow position:chr14:12951402-12950732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:453
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:144-820
               
               
               Cow position:chr14:8517800-8517074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:144-834
               
               
               Cow position:chr14:50068910-50069646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 12

               
               
               Conread position:145-293
               
               
               Cow position:chr14:25886133-25886288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-801
               
               
               Cow position:chr14:48707480-48706794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:440
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):6, 269

               
               
               Conread position:145-819
               
               
               Cow position:chr14:45996294-45996980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:145-829
               
               
               Cow position:chr14:38812447-38813164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:536
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:146-382
               
               
               Cow position:chr14:13297319-13297579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:146-382
               
               
               Cow position:chr14:28138189-28138448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:146-382
               
               
               Cow position:chr14:46224299-46224542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 78

               
               
               Conread position:146-413
               
               
               Cow position:chr14:33666112-33665818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):13, 129

               
               
               Conread position:146-549
               
               
               Cow position:chr14:18497273-18496838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:301
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):13, 353

               
               
               Conread position:146-741
               
               
               Cow position:chr14:12483686-12483045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 580

               
               
               Conread position:146-760
               
               
               Cow position:chr14:38406267-38405597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 53

               
               
               Conread position:146-834
               
               
               Cow position:chr14:13619158-13619887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 184

               
               
               Conread position:146-834
               
               
               Cow position:chr14:32450243-32449515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 120

               
               
               Conread position:147-410
               
               
               Cow position:chr14:46085293-46085001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-410
               
               
               Cow position:chr14:46178633-46178341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-449
               
               
               Cow position:chr14:45328079-45327757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 79

               
               
               Conread position:147-452
               
               
               Cow position:chr14:1802484-1802151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):15, 290

               
               
               Conread position:147-453
               
               
               Cow position:chr14:9538398-9538069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:147-527
               
               
               Cow position:chr14:50028556-50028937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:273
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):69, 9

               
               
               Conread position:147-535
               
               
               Cow position:chr14:9876014-9876422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:279
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):12, 35

               
               
               Conread position:147-627
               
               
               Cow position:chr14:45848442-45847917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:354
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):12, 94

               
               
               Conread position:147-644
               
               
               Cow position:chr14:5501210-5500669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 349

               
               
               Conread position:147-717
               
               
               Cow position:chr14:424459-423850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 126

               
               
               Conread position:147-819
               
               
               Cow position:chr14:50114628-50113931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 52

               
               
               Conread position:147-834
               
               
               Cow position:chr14:11474042-11474744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 14

               
               
               Conread position:147-834
               
               
               Cow position:chr14:15271978-15272715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 390

               
               
               Conread position:147-834
               
               
               Cow position:chr14:16916474-16917180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 77

               
               
               Conread position:147-834
               
               
               Cow position:chr14:22026491-22027226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 130

               
               
               Conread position:147-834
               
               
               Cow position:chr14:34055761-34055051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:450
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):12, 98

               
               
               Conread position:148-446
               
               
               Cow position:chr14:18811486-18811175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:148-446
               
               
               Cow position:chr14:35588954-35588638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 76

               
               
               Conread position:148-511
               
               
               Cow position:chr14:23259641-23260037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):74, 10

               
               
               Conread position:148-804
               
               
               Cow position:chr14:11564816-11564113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 519

               
               
               Conread position:148-825
               
               
               Cow position:chr14:44253523-44254268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:482
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):75, 131

               
               
               Conread position:148-834
               
               
               Cow position:chr14:13309017-13308278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 605

               
               
               Conread position:148-834
               
               
               Cow position:chr14:19490269-19489528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 605

               
               
               Conread position:150-548
               
               
               Cow position:chr14:36109556-36109976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):81, 9

               
               
               Conread position:150-831
               
               
               Cow position:chr14:44692430-44691722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 8

               
               
               Conread position:152-834
               
               
               Cow position:chr14:27051909-27052632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:460
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):78, 118

               
               
               Conread position:153-635
               
               
               Cow position:chr14:24980828-24980297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:153-793
               
               
               Cow position:chr14:21746454-21745831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:425
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):159, 50

               
               
               Conread position:154-579
               
               
               Cow position:chr14:32580557-32580092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:154-822
               
               
               Cow position:chr14:17770903-17771625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:473
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):5, 36

               
               
               Conread position:158-382
               
               
               Cow position:chr14:14443167-14443413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr14:18191176-18191422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr14:29114726-29114972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr14:49063514-49063269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 109

               
               
               Conread position:158-398
               
               
               Cow position:chr14:35016678-35016418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 234

               
               
               Conread position:158-410
               
               
               Cow position:chr14:45790282-45790003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:158-411
               
               
               Cow position:chr14:30453264-30453544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-415
               
               
               Cow position:chr14:19550758-19550476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 256

               
               
               Conread position:158-436
               
               
               Cow position:chr14:9020668-9020972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):64, 35

               
               
               Conread position:158-449
               
               
               Cow position:chr14:32277245-32277566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):60, 113

               
               
               Conread position:158-453
               
               
               Cow position:chr14:5112866-5113193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr14:21765474-21765147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr14:46125822-46125495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-466
               
               
               Cow position:chr14:10349587-10349926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-466
               
               
               Cow position:chr14:23215477-23215138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):64, 321

               
               
               Conread position:158-522
               
               
               Cow position:chr14:10541620-10542011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):64, 374

               
               
               Conread position:158-522
               
               
               Cow position:chr14:33773246-33772857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:274
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):64, 304

               
               
               Conread position:158-528
               
               
               Cow position:chr14:32500436-32500042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:273
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):64, 234

               
               
               Conread position:158-534
               
               
               Cow position:chr14:48828495-48828089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):64, 393

               
               
               Conread position:158-540
               
               
               Cow position:chr14:14786043-14786461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:158-540
               
               
               Cow position:chr14:19524327-19523907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-579
               
               
               Cow position:chr14:37883271-37882803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:315
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):61, 36

               
               
               Conread position:158-580
               
               
               Cow position:chr14:26128905-26129373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:309
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr14:46848771-46849231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:311
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):65, 344

               
               
               Conread position:158-727
               
               
               Cow position:chr14:48572079-48572705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 593

               
               
               Conread position:158-729
               
               
               Cow position:chr14:13810762-13811384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 588

               
               
               Conread position:158-765
               
               
               Cow position:chr14:30581190-30581844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 590

               
               
               Conread position:158-768
               
               
               Cow position:chr14:8396505-8397168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-768
               
               
               Cow position:chr14:9744373-9745005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 116

               
               
               Conread position:158-772
               
               
               Cow position:chr14:46960662-46959995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-775
               
               
               Cow position:chr14:13370497-13369832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:158-815
               
               
               Cow position:chr14:29890790-29891470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 63

               
               
               Conread position:158-822
               
               
               Cow position:chr14:17488063-17488766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 590

               
               
               Conread position:158-825
               
               
               Cow position:chr14:9449271-9449974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 138

               
               
               Conread position:158-825
               
               
               Cow position:chr14:9811954-9811236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:158-825
               
               
               Cow position:chr14:38436299-38435588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 211

               
               
               Conread position:158-825
               
               
               Cow position:chr14:48495505-48494801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 300

               
               
               Conread position:158-829
               
               
               Cow position:chr14:5645683-5644958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 591

               
               
               Conread position:158-834
               
               
               Cow position:chr14:8102405-8103127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 45

               
               
               Conread position:158-834
               
               
               Cow position:chr14:9048107-9047384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 305

               
               
               Conread position:158-834
               
               
               Cow position:chr14:17762114-17762840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:158-834
               
               
               Cow position:chr14:21534405-21533689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 22

               
               
               Conread position:158-834
               
               
               Cow position:chr14:23254068-23254792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 199

               
               
               Conread position:158-834
               
               
               Cow position:chr14:38237820-38238550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 596

               
               
               Conread position:158-834
               
               
               Cow position:chr14:40969420-40968701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 22

               
               
               Conread position:158-834
               
               
               Cow position:chr14:45576889-45576198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 22

               
               
               Conread position:159-616
               
               
               Cow position:chr14:32471632-32472131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:338
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):60, 39

               
               
               Conread position:159-741
               
               
               Cow position:chr14:28117307-28116697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 81

               
               
               Conread position:159-832
               
               
               Cow position:chr14:34395006-34394286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 364

               
               
               Conread position:159-834
               
               
               Cow position:chr14:13236545-13237253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 273

               
               
               Conread position:160-337
               
               
               Cow position:chr14:11843825-11843630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-402
               
               
               Cow position:chr14:21737143-21736891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):131, 221

               
               
               Conread position:160-404
               
               
               Cow position:chr14:30759782-30760031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):62, 21

               
               
               Conread position:160-410
               
               
               Cow position:chr14:9511461-9511731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:160-476
               
               
               Cow position:chr14:45292240-45291913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):71, 92

               
               
               Conread position:160-498
               
               
               Cow position:chr14:37677646-37677281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):57, 223

               
               
               Conread position:160-510
               
               
               Cow position:chr14:37334714-37335087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:261
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):62, 152

               
               
               Conread position:160-522
               
               
               Cow position:chr14:20786655-20786261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):62, 229

               
               
               Conread position:160-528
               
               
               Cow position:chr14:42849346-42849732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:277
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):9, 44

               
               
               Conread position:160-540
               
               
               Cow position:chr14:34370784-34370388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):179, 63

               
               
               Conread position:160-568
               
               
               Cow position:chr14:13360809-13360380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):65, 188

               
               
               Conread position:160-580
               
               
               Cow position:chr14:38047449-38046989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:311
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:160-720
               
               
               Cow position:chr14:31290131-31289519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 586

               
               
               Conread position:160-727
               
               
               Cow position:chr14:22689626-22690242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 81

               
               
               Conread position:160-768
               
               
               Cow position:chr14:39821808-39822471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 330

               
               
               Conread position:160-776
               
               
               Cow position:chr14:5076245-5075593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:427
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):65, 273

               
               
               Conread position:160-778
               
               
               Cow position:chr14:42259738-42259073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 363

               
               
               Conread position:160-800
               
               
               Cow position:chr14:29709175-29708535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:407
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):103, 65

               
               
               Conread position:160-804
               
               
               Cow position:chr14:14420135-14420829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 586

               
               
               Conread position:160-805
               
               
               Cow position:chr14:45186561-45187258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 608

               
               
               Conread position:160-831
               
               
               Cow position:chr14:35604357-35603644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:457
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):21, 433

               
               
               Conread position:160-831
               
               
               Cow position:chr14:40721147-40720426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 316

               
               
               Conread position:160-834
               
               
               Cow position:chr14:13283033-13282336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 58

               
               
               Conread position:160-834
               
               
               Cow position:chr14:27040113-27040837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 349

               
               
               Conread position:160-834
               
               
               Cow position:chr14:29642376-29641671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:457
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):51, 93

               
               
               Conread position:160-834
               
               
               Cow position:chr14:30476071-30476789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 340

               
               
               Conread position:160-834
               
               
               Cow position:chr14:49219606-49218886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:459
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):32, 27

               
               
               Conread position:161-324
               
               
               Cow position:chr14:2269672-2269846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):57, 88

               
               
               Conread position:161-644
               
               
               Cow position:chr14:44382550-44382021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:349
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):63, 309

               
               
               Conread position:161-834
               
               
               Cow position:chr14:1727416-1726693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 224

               
               
               Conread position:163-780
               
               
               Cow position:chr14:24837069-24836403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 38

               
               
               Conread position:163-808
               
               
               Cow position:chr14:45739059-45739748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 86

               
               
               Conread position:164-694
               
               
               Cow position:chr14:42626411-42626990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 137

               
               
               Conread position:164-825
               
               
               Cow position:chr14:45583572-45582885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:165-387
               
               
               Cow position:chr14:28496771-28497012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):60, 169

               
               
               Conread position:165-642
               
               
               Cow position:chr14:446021-446525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 184

               
               
               Conread position:166-834
               
               
               Cow position:chr14:13276340-13275620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 73

               
               
               Conread position:170-639
               
               
               Cow position:chr14:3437923-3438414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:323
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):61, 337

               
               
               Conread position:171-453
               
               
               Cow position:chr14:22612440-22612754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:171-746
               
               
               Cow position:chr14:47593602-47592987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:395
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):103, 59

               
               
               Conread position:171-834
               
               
               Cow position:chr14:1661688-1661002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 141

               
               
               Conread position:172-684
               
               
               Cow position:chr14:38652172-38651606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:379
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:172-831
               
               
               Cow position:chr14:26496518-26497224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 99

               
               
               Conread position:173-452
               
               
               Cow position:chr14:9108494-9108797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 261

               
               
               Conread position:174-824
               
               
               Cow position:chr14:35497747-35497101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 51

               
               
               Conread position:187-540
               
               
               Cow position:chr14:47872878-47873269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:189-834
               
               
               Cow position:chr14:7476100-7475405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 529

               
               
               Conread position:189-834
               
               
               Cow position:chr14:44555084-44554407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 27

               
               
               Conread position:190-834
               
               
               Cow position:chr14:29044430-29045127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 318

               
               
               Conread position:196-603
               
               
               Cow position:chr14:34763956-34763510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:201-825
               
               
               Cow position:chr14:38458927-38459597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 71

               
               
               Conread position:207-551
               
               
               Cow position:chr14:13105164-13104785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:208-571
               
               
               Cow position:chr14:50141808-50142205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:259
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:208-834
               
               
               Cow position:chr14:45025412-45026080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 448

               
               
               Conread position:216-522
               
               
               Cow position:chr14:12066242-12066571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):75, 8

               
               
               Conread position:221-528
               
               
               Cow position:chr14:34354741-34354420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 66

               
               
               Conread position:221-748
               
               
               Cow position:chr14:8925300-8924728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 524

               
               
               Conread position:221-794
               
               
               Cow position:chr14:30662851-30663464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:401
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):15, 57

               
               
               Conread position:221-806
               
               
               Cow position:chr14:8998808-8998189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 124

               
               
               Conread position:221-834
               
               
               Cow position:chr14:23527795-23528446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:408
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):15, 200

               
               
               Conread position:225-834
               
               
               Cow position:chr14:46303103-46302451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 522

               
               
               Conread position:229-778
               
               
               Cow position:chr14:47937920-47938492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:362
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):63, 325

               
               
               Conread position:229-812
               
               
               Cow position:chr14:49329157-49328542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 73

               
               
               Conread position:235-522
               
               
               Cow position:chr14:46225355-46225057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):103, 50

               
               
               Conread position:236-772
               
               
               Cow position:chr14:18323116-18322558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:355
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):103, 44

               
               
               Conread position:246-635
               
               
               Cow position:chr14:41211893-41212287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:273
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):40, 132

               
               
               Conread position:248-834
               
               
               Cow position:chr14:15336467-15337087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:253-558
               
               
               Cow position:chr14:46303996-46303689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):69, 33

               
               
               Conread position:255-834
               
               
               Cow position:chr14:38225860-38226455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:386
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):28, 155

               
               
               Conread position:257-834
               
               
               Cow position:chr14:25430805-25430193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:383
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 19

               
               
               Conread position:259-606
               
               
               Cow position:chr14:33714133-33713781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 129

               
               
               Conread position:260-825
               
               
               Cow position:chr14:30738806-30738208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 211

               
               
               Conread position:266-806
               
               
               Cow position:chr14:30664785-30665344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:349
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):73, 224

               
               
               Conread position:269-808
               
               
               Cow position:chr14:29772996-29773564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:382
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):134, 75

               
               
               Conread position:285-541
               
               
               Cow position:chr14:47645555-47645283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):54, 241

               
               
               Conread position:289-821
               
               
               Cow position:chr14:45192651-45192089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:351
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 240

               
               
               Conread position:290-644
               
               
               Cow position:chr14:41219923-41220307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:290-824
               
               
               Cow position:chr14:17756944-17757478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:371
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):124, 50

               
               
               Conread position:291-834
               
               
               Cow position:chr14:34629071-34629656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 446

               
               
               Conread position:292-635
               
               
               Cow position:chr14:14271480-14271107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:292-823
               
               
               Cow position:chr14:44772714-44773263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 134

               
               
               Conread position:293-833
               
               
               Cow position:chr14:37257236-37256705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:343
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):187, 96

               
               
               Conread position:297-471
               
               
               Cow position:chr14:1867590-1867422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):42, 7

               
               
               Conread position:305-834
               
               
               Cow position:chr14:30593163-30593714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 108

               
               
               Conread position:309-827
               
               
               Cow position:chr14:30659374-30659911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:348
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):30, 6

               
               
               Conread position:311-834
               
               
               Cow position:chr14:12858533-12859092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 426

               
               
               Conread position:315-819
               
               
               Cow position:chr14:47603266-47602743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:344
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):24, 92

               
               
               Conread position:327-824
               
               
               Cow position:chr14:48491647-48491123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 23

               
               
               Conread position:334-771
               
               
               Cow position:chr14:29726948-29726492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:301
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):55, 83

               
               
               Conread position:334-834
               
               
               Cow position:chr14:748526-749053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 359

               
               
               Conread position:336-614
               
               
               Cow position:chr14:24797615-24797919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:336-834
               
               
               Cow position:chr14:19419169-19418640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 395

               
               
               Conread position:340-685
               
               
               Cow position:chr14:25683727-25684093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):47, 215

               
               
               Conread position:340-824
               
               
               Cow position:chr14:44076615-44077130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 357

               
               
               Conread position:341-834
               
               
               Cow position:chr14:21540849-21541363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 124

               
               
               Conread position:342-834
               
               
               Cow position:chr14:16996969-16997493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:345-803
               
               
               Cow position:chr14:39321894-39321419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:303
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):45, 102

               
               
               Conread position:354-719
               
               
               Cow position:chr14:35016416-35016020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 371

               
               
               Conread position:354-834
               
               
               Cow position:chr14:22103522-22104011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):219, 355

               
               
               Conread position:377-849
               
               
               Cow position:chr14:50145256-50144757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 8

               
               
               Conread position:379-819
               
               
               Cow position:chr14:44482573-44482109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:305
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):54, 10

               
               
               Conread position:421-768
               
               
               Cow position:chr14:36289279-36288913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):10, 238

               
               
               Conread position:421-834
               
               
               Cow position:chr14:13683547-13683112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr14:19550174-19549741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 87

               
               
               Conread position:422-825
               
               
               Cow position:chr14:44236625-44236206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:294
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):7, 85

               
               
               Conread position:423-834
               
               
               Cow position:chr14:37227152-37226719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 301

               
               
               Conread position:427-786
               
               
               Cow position:chr14:39773535-39773174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:265
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):97, 58

               
               
               Conread position:427-825
               
               
               Cow position:chr14:46124083-46123674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):50, 282

               
               
               Conread position:429-834
               
               
               Cow position:chr14:45789943-45789524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 250

               
               
               Conread position:433-834
               
               
               Cow position:chr14:28208315-28208738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:286
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):48, 74

               
               
               Conread position:438-824
               
               
               Cow position:chr14:21689201-21688818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):36, 121

               
               
               Conread position:438-834
               
               
               Cow position:chr14:9511970-9512384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:442-829
               
               
               Cow position:chr14:10349936-10350327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 150

               
               
               Conread position:451-834
               
               
               Cow position:chr14:25695005-25694602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:278
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):73, 22

               
               
               Conread position:456-802
               
               
               Cow position:chr14:42150418-42150057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 261

               
               
               Conread position:489-778
               
               
               Cow position:chr14:46489070-46488772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 54

               
               
               Conread position:491-767
               
               
               Cow position:chr14:12616343-12616638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-826
               
               
               Cow position:chr14:50121517-50121863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):34, 7

               
               
               Conread position:491-831
               
               
               Cow position:chr14:38915173-38915526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 221

               
               
               Conread position:491-834
               
               
               Cow position:chr14:13464305-13463945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 205

               
               
               Conread position:491-834
               
               
               Cow position:chr14:19325351-19325713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:253
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):34, 230

               
               
               Conread position:495-814
               
               
               Cow position:chr14:37981420-37981758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):33, 121

               
               
               Conread position:506-805
               
               
               Cow position:chr14:12944915-12945211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:508-834
               
               
               Cow position:chr14:25363595-25363925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):82, 29

               
               
               Conread position:513-815
               
               
               Cow position:chr14:28691182-28691488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 52

               
               
               Conread position:514-792
               
               
               Cow position:chr14:25259863-25259579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:515-824
               
               
               Cow position:chr14:33679920-33679605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:518-819
               
               
               Cow position:chr14:12066627-12066918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:519-825
               
               
               Cow position:chr14:8900408-8900720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):54, 15

               
               
               Conread position:521-819
               
               
               Cow position:chr14:50028955-50029256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:530-815
               
               
               Cow position:chr14:25166546-25166254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:545-834
               
               
               Cow position:chr14:46303554-46303252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 167

               
               
               Conread position:569-741
               
               
               Cow position:chr14:43564251-43564074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 132

               
               
               Conread position:569-825
               
               
               Cow position:chr14:14082573-14082312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-834
               
               
               Cow position:chr14:7227224-7226954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-834
               
               
               Cow position:chr14:33581989-33582265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):79, 131

               
               
               Conread position:569-834
               
               
               Cow position:chr14:47579434-47579164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:570-834
               
               
               Cow position:chr14:16037415-16037146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):77, 135

               
               
               Conread position:571-796
               
               
               Cow position:chr14:43863284-43863514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):75, 136

               
               
               Conread position:585-797
               
               
               Cow position:chr14:9876534-9876750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):63, 14

               
               
               Conread position:591-834
               
               
               Cow position:chr14:20785889-20785641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):55, 116

               
               
               Conread position:604-825
               
               
               Cow position:chr14:37882533-37882306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:609-805
               
               
               Cow position:chr14:34762648-34762849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:609-815
               
               
               Cow position:chr14:35291754-35291963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):37, 74

               
               
               Conread position:609-822
               
               
               Cow position:chr14:48827981-48827763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:609-828
               
               
               Cow position:chr14:9254305-9254082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):27, 81

               
               
               Conread position:609-834
               
               
               Cow position:chr14:15181434-15181660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):39, 91

               
               
               Conread position:609-834
               
               
               Cow position:chr14:34668014-34668244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):37, 62

               
               
               Conread position:609-834
               
               
               Cow position:chr14:43794830-43795059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:619-831
               
               
               Cow position:chr14:2297452-2297236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):27, 82

               
               
               Conread position:621-831
               
               
               Cow position:chr14:33673344-33673138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):27, 46

               
               
               Conread position:626-832
               
               
               Cow position:chr14:30703534-30703744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):21, 64

               
               
               Conread position:646-849
               
               
               Cow position:chr14:45165753-45165549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):20, 58

               
               
               Conread position:657-833
               
               
               Cow position:chr14:34040419-34040585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:666-795
               
               
               Cow position:chr14:25614710-25614836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:666-823
               
               
               Cow position:chr14:44261179-44261023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr14:28210629-28210462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:666-835
               
               
               Cow position:chr14:41766786-41766619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:667-834
               
               
               Cow position:chr14:20562152-20562328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 29

               
               
               Conread position:698-835
               
               
               Cow position:chr14:41636095-41635959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):124, 109

               
               
               Conread position:703-814
               
               
               Cow position:chr14:46504432-46504321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:709-834
               
               
               Cow position:chr14:28284879-28285004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:716-825
               
               
               Cow position:chr14:43563759-43563650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-822
               
               
               Cow position:chr15:3007449-3008272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:831
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 45

               
               
               Conread position:69-644
               
               
               Cow position:chr15:37382207-37382844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:69-834
               
               
               Cow position:chr15:1776545-1775693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:860
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 44

               
               
               Conread position:71-834
               
               
               Cow position:chr15:6464444-6463635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:826
               
               
               Alignm identity:546
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 36

               
               
               Conread position:73-284
               
               
               Cow position:chr15:1298350-1298579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:73-375
               
               
               Cow position:chr15:14855862-14855533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 35

               
               
               Conread position:73-382
               
               
               Cow position:chr15:4918472-4918139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):74, 25

               
               
               Conread position:73-453
               
               
               Cow position:chr15:20944753-20944323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):71, 34

               
               
               Conread position:73-540
               
               
               Cow position:chr15:42727752-42727242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 24

               
               
               Conread position:73-571
               
               
               Cow position:chr15:2805892-2806432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:372
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):25, 40

               
               
               Conread position:73-580
               
               
               Cow position:chr15:2590773-2590217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:370
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-616
               
               
               Cow position:chr15:14578050-14578630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:384
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):61, 114

               
               
               Conread position:73-807
               
               
               Cow position:chr15:6331477-6330711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 31

               
               
               Conread position:73-816
               
               
               Cow position:chr15:3720761-3721564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:811
               
               
               Alignm identity:545
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-825
               
               
               Cow position:chr15:6082056-6081260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:810
               
               
               Alignm identity:539
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 36

               
               
               Conread position:73-825
               
               
               Cow position:chr15:47201181-47202005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:837
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 38

               
               
               Conread position:73-826
               
               
               Cow position:chr15:2015849-2015053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:813
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:73-828
               
               
               Cow position:chr15:1082799-1082000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:809
               
               
               Alignm identity:556
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr15:481944-481134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:817
               
               
               Alignm identity:547
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 31

               
               
               Conread position:73-834
               
               
               Cow position:chr15:1786140-1785319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:828
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr15:2643967-2644796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:834
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr15:2898875-2899705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:838
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-834
               
               
               Cow position:chr15:6163725-6164541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:824
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 39

               
               
               Conread position:73-834
               
               
               Cow position:chr15:7319935-7319118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:821
               
               
               Alignm identity:547
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 59

               
               
               Conread position:73-834
               
               
               Cow position:chr15:13545712-13546498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:803
               
               
               Alignm identity:535
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 197

               
               
               Conread position:73-834
               
               
               Cow position:chr15:18230384-18229616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:790
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):342, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr15:25069114-25069944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:833
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr15:41360375-41359555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:826
               
               
               Alignm identity:589
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 39

               
               
               Conread position:73-885
               
               
               Cow position:chr15:20413955-20413074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:887
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:74-767
               
               
               Cow position:chr15:608750-609501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 38

               
               
               Conread position:75-822
               
               
               Cow position:chr15:2928622-2927811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:816
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:76-834
               
               
               Cow position:chr15:39090850-39091660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:828
               
               
               Alignm identity:604
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 28

               
               
               Conread position:122-325
               
               
               Cow position:chr15:22138764-22138978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):18, 171

               
               
               Conread position:122-805
               
               
               Cow position:chr15:37395020-37394309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 194

               
               
               Conread position:128-831
               
               
               Cow position:chr15:4829640-4828878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:525
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 69

               
               
               Conread position:130-645
               
               
               Cow position:chr15:26158304-26157754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 29

               
               
               Conread position:138-616
               
               
               Cow position:chr15:6065447-6065955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:352
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:139-615
               
               
               Cow position:chr15:44260365-44260878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:347
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):10, 404

               
               
               Conread position:142-369
               
               
               Cow position:chr15:44377999-44378234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:142-453
               
               
               Cow position:chr15:41793036-41793378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:142-644
               
               
               Cow position:chr15:45292611-45292081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:346
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:142-768
               
               
               Cow position:chr15:7578455-7577782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:142-825
               
               
               Cow position:chr15:4218625-4219355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:142-834
               
               
               Cow position:chr15:35643172-35643899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:143-282
               
               
               Cow position:chr15:21909119-21909263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-356
               
               
               Cow position:chr15:44811397-44811622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:143-367
               
               
               Cow position:chr15:33662950-33663195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-380
               
               
               Cow position:chr15:49191273-49191531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr15:38285595-38285335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-383
               
               
               Cow position:chr15:8001274-8001532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:143-387
               
               
               Cow position:chr15:22752136-22752403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-453
               
               
               Cow position:chr15:6158473-6158136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-457
               
               
               Cow position:chr15:21911005-21911349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-468
               
               
               Cow position:chr15:2800643-2800994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):9, 150

               
               
               Conread position:143-512
               
               
               Cow position:chr15:34140696-34141091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:270
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-521
               
               
               Cow position:chr15:31768258-31768667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):79, 18

               
               
               Conread position:143-523
               
               
               Cow position:chr15:45211305-45210892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-527
               
               
               Cow position:chr15:22095782-22096192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:287
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-528
               
               
               Cow position:chr15:41029026-41029445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-533
               
               
               Cow position:chr15:49307086-49306666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-540
               
               
               Cow position:chr15:4713201-4712766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:298
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-551
               
               
               Cow position:chr15:50142552-50142107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:302
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:143-553
               
               
               Cow position:chr15:794347-793902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:143-580
               
               
               Cow position:chr15:18661779-18661300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:324
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-594
               
               
               Cow position:chr15:4769796-4769303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:337
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-635
               
               
               Cow position:chr15:31357308-31357844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:357
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-644
               
               
               Cow position:chr15:21608054-21607520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-644
               
               
               Cow position:chr15:26388677-26389218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:371
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-644
               
               
               Cow position:chr15:48557012-48556465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-645
               
               
               Cow position:chr15:6758184-6758733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-645
               
               
               Cow position:chr15:10736859-10736314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 10

               
               
               Conread position:143-649
               
               
               Cow position:chr15:2925496-2924951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:375
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:143-692
               
               
               Cow position:chr15:18214862-18214264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:397
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-693
               
               
               Cow position:chr15:20352518-20353112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:143-713
               
               
               Cow position:chr15:36423323-36423941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-746
               
               
               Cow position:chr15:50344445-50345092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:143-807
               
               
               Cow position:chr15:45244881-45244171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-811
               
               
               Cow position:chr15:5242761-5243458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-815
               
               
               Cow position:chr15:32701445-32702160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr15:5983922-5983201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr15:4389040-4388298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr15:6550321-6551066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr15:12417422-12418158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 9

               
               
               Conread position:143-834
               
               
               Cow position:chr15:17034341-17035081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr15:17074070-17074812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr15:19734506-19735249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-834
               
               
               Cow position:chr15:21637566-21636823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr15:23666201-23666944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr15:24044046-24043333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr15:35750006-35750745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr15:36940090-36940832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr15:50151993-50151250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:144-453
               
               
               Cow position:chr15:2796630-2796298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-620
               
               
               Cow position:chr15:29340810-29341336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:144-824
               
               
               Cow position:chr15:36671449-36670729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:144-825
               
               
               Cow position:chr15:7271632-7270897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:144-834
               
               
               Cow position:chr15:4787521-4788248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 9

               
               
               Conread position:144-834
               
               
               Cow position:chr15:26591058-26591796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:145-382
               
               
               Cow position:chr15:24968465-24968731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-555
               
               
               Cow position:chr15:20404392-20404838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:309
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-819
               
               
               Cow position:chr15:7941707-7940992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 16

               
               
               Conread position:145-824
               
               
               Cow position:chr15:19725038-19724335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:461
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):80, 7

               
               
               Conread position:145-834
               
               
               Cow position:chr15:29018-29758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr15:5020653-5019942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr15:13683622-13682886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:145-834
               
               
               Cow position:chr15:21807140-21806399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr15:36329169-36329910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr15:44073736-44072997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:146-548
               
               
               Cow position:chr15:28071147-28071581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:287
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):5, 15

               
               
               Conread position:146-740
               
               
               Cow position:chr15:4728441-4727815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:415
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):13, 35

               
               
               Conread position:146-823
               
               
               Cow position:chr15:22713014-22712296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 15

               
               
               Conread position:146-825
               
               
               Cow position:chr15:8629595-8628869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 7

               
               
               Conread position:146-834
               
               
               Cow position:chr15:5498346-5497611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 157

               
               
               Conread position:146-834
               
               
               Cow position:chr15:35416878-35416147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 286

               
               
               Conread position:146-849
               
               
               Cow position:chr15:36618869-36619607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:755
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 7

               
               
               Conread position:147-467
               
               
               Cow position:chr15:16967970-16967630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):12, 50

               
               
               Conread position:147-500
               
               
               Cow position:chr15:8937695-8937313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:272
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):12, 134

               
               
               Conread position:147-516
               
               
               Cow position:chr15:24568762-24569166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-548
               
               
               Cow position:chr15:37769783-37770213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:291
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):12, 159

               
               
               Conread position:147-580
               
               
               Cow position:chr15:29884031-29884498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:319
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):12, 201

               
               
               Conread position:147-644
               
               
               Cow position:chr15:6152353-6152898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 516

               
               
               Conread position:147-684
               
               
               Cow position:chr15:13076816-13076218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 343

               
               
               Conread position:147-759
               
               
               Cow position:chr15:9438880-9438228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:419
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):76, 124

               
               
               Conread position:147-788
               
               
               Cow position:chr15:27747224-27747924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 578

               
               
               Conread position:147-807
               
               
               Cow position:chr15:4626134-4626840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 45

               
               
               Conread position:147-828
               
               
               Cow position:chr15:1128705-1129428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 56

               
               
               Conread position:147-828
               
               
               Cow position:chr15:7962759-7963479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 174

               
               
               Conread position:147-830
               
               
               Cow position:chr15:42533329-42532605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 597

               
               
               Conread position:147-834
               
               
               Cow position:chr15:13285861-13286552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 78

               
               
               Conread position:147-834
               
               
               Cow position:chr15:15343818-15344553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 131

               
               
               Conread position:147-834
               
               
               Cow position:chr15:15865521-15864801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:454
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:147-834
               
               
               Cow position:chr15:21826157-21825415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 610

               
               
               Conread position:147-834
               
               
               Cow position:chr15:51221029-51220291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 129

               
               
               Conread position:148-293
               
               
               Cow position:chr15:11289761-11289916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-387
               
               
               Cow position:chr15:40171085-40171346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:148-411
               
               
               Cow position:chr15:16039144-16038862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 94

               
               
               Conread position:148-456
               
               
               Cow position:chr15:20458623-20458291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 290

               
               
               Conread position:148-537
               
               
               Cow position:chr15:20347982-20348401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:290
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):11, 336

               
               
               Conread position:148-725
               
               
               Cow position:chr15:32065004-32065633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:148-767
               
               
               Cow position:chr15:28236265-28235615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:433
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):11, 338

               
               
               Conread position:148-808
               
               
               Cow position:chr15:7548133-7547446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 128

               
               
               Conread position:148-819
               
               
               Cow position:chr15:2670018-2670719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:148-831
               
               
               Cow position:chr15:2616791-2617512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 100

               
               
               Conread position:148-834
               
               
               Cow position:chr15:312513-313250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 45

               
               
               Conread position:148-834
               
               
               Cow position:chr15:4925435-4924714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 96

               
               
               Conread position:150-359
               
               
               Cow position:chr15:36435895-36436121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):72, 9

               
               
               Conread position:150-834
               
               
               Cow position:chr15:38983959-38983210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:753
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 9

               
               
               Conread position:151-823
               
               
               Cow position:chr15:7553903-7553172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 608

               
               
               Conread position:153-412
               
               
               Cow position:chr15:16927186-16926907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):6, 24

               
               
               Conread position:153-834
               
               
               Cow position:chr15:14573038-14573753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 36

               
               
               Conread position:154-824
               
               
               Cow position:chr15:3832920-3833642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:466
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):5, 87

               
               
               Conread position:155-457
               
               
               Cow position:chr15:51683161-51682841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:157-819
               
               
               Cow position:chr15:4953598-4952892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 263

               
               
               Conread position:157-834
               
               
               Cow position:chr15:6588655-6589382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 593

               
               
               Conread position:158-357
               
               
               Cow position:chr15:13641367-13641148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:158-358
               
               
               Cow position:chr15:33605614-33605832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:158-358
               
               
               Cow position:chr15:53209965-53210179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):66, 17

               
               
               Conread position:158-358
               
               
               Cow position:chr15:53232222-53232436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):66, 17

               
               
               Conread position:158-373
               
               
               Cow position:chr15:9160491-9160725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-380
               
               
               Cow position:chr15:34240370-34240126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr15:6959975-6959737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):64, 144

               
               
               Conread position:158-382
               
               
               Cow position:chr15:25203693-25203939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr15:52208218-52208464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-387
               
               
               Cow position:chr15:488996-489247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-452
               
               
               Cow position:chr15:9620121-9620448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr15:11596103-11596430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr15:44576677-44576350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-454
               
               
               Cow position:chr15:37744332-37744011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):64, 193

               
               
               Conread position:158-462
               
               
               Cow position:chr15:33681349-33681672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):64, 172

               
               
               Conread position:158-502
               
               
               Cow position:chr15:17773070-17773448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-522
               
               
               Cow position:chr15:35838382-35837994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):59, 277

               
               
               Conread position:158-528
               
               
               Cow position:chr15:7512077-7512482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:280
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-528
               
               
               Cow position:chr15:25463249-25463650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-540
               
               
               Cow position:chr15:4821792-4822210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:280
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:158-540
               
               
               Cow position:chr15:25164825-25165245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:284
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-551
               
               
               Cow position:chr15:45944419-45944848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:285
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:158-562
               
               
               Cow position:chr15:30984840-30984402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:158-563
               
               
               Cow position:chr15:35739508-35739078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:291
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):64, 251

               
               
               Conread position:158-580
               
               
               Cow position:chr15:678340-677874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:314
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr15:4123062-4122597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:316
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):64, 336

               
               
               Conread position:158-626
               
               
               Cow position:chr15:21152542-21153058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:345
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):60, 343

               
               
               Conread position:158-692
               
               
               Cow position:chr15:16784599-16784017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 277

               
               
               Conread position:158-692
               
               
               Cow position:chr15:50308193-50308774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:384
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):64, 332

               
               
               Conread position:158-720
               
               
               Cow position:chr15:20172717-20173323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:402
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):64, 340

               
               
               Conread position:158-734
               
               
               Cow position:chr15:7847529-7848150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 41

               
               
               Conread position:158-768
               
               
               Cow position:chr15:4214439-4213785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 328

               
               
               Conread position:158-778
               
               
               Cow position:chr15:12442805-12442140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 590

               
               
               Conread position:158-795
               
               
               Cow position:chr15:7985148-7985841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 598

               
               
               Conread position:158-801
               
               
               Cow position:chr15:16787362-16788048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 119

               
               
               Conread position:158-806
               
               
               Cow position:chr15:12439991-12439325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 133

               
               
               Conread position:158-825
               
               
               Cow position:chr15:5640312-5641032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 598

               
               
               Conread position:158-825
               
               
               Cow position:chr15:28486864-28487569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 155

               
               
               Conread position:158-826
               
               
               Cow position:chr15:60896-60189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 266

               
               
               Conread position:158-833
               
               
               Cow position:chr15:3792084-3791364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:459
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):22, 504

               
               
               Conread position:158-834
               
               
               Cow position:chr15:67287-68009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 336

               
               
               Conread position:158-834
               
               
               Cow position:chr15:442511-443237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 116

               
               
               Conread position:158-834
               
               
               Cow position:chr15:4082263-4081552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 138

               
               
               Conread position:158-834
               
               
               Cow position:chr15:4139635-4140359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 590

               
               
               Conread position:158-834
               
               
               Cow position:chr15:6617077-6616348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr15:7267880-7267153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 585

               
               
               Conread position:158-834
               
               
               Cow position:chr15:7566279-7565553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 116

               
               
               Conread position:158-834
               
               
               Cow position:chr15:7586509-7587231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 22

               
               
               Conread position:158-834
               
               
               Cow position:chr15:8028739-8029458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 235

               
               
               Conread position:158-834
               
               
               Cow position:chr15:12859420-12858692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-834
               
               
               Cow position:chr15:18264482-18265211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr15:25133241-25132506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 600

               
               
               Conread position:158-834
               
               
               Cow position:chr15:32714978-32714253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 121

               
               
               Conread position:158-834
               
               
               Cow position:chr15:33228779-33229503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 183

               
               
               Conread position:158-834
               
               
               Cow position:chr15:51632362-51631695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 74

               
               
               Conread position:159-580
               
               
               Cow position:chr15:2534009-2533544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:308
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:159-819
               
               
               Cow position:chr15:22759722-22760424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 521

               
               
               Conread position:159-825
               
               
               Cow position:chr15:6120656-6119946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 16

               
               
               Conread position:160-387
               
               
               Cow position:chr15:21839789-21840023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):62, 130

               
               
               Conread position:160-528
               
               
               Cow position:chr15:22855280-22855682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:160-548
               
               
               Cow position:chr15:1329415-1329007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 52

               
               
               Conread position:160-570
               
               
               Cow position:chr15:363699-364147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:300
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):56, 270

               
               
               Conread position:160-579
               
               
               Cow position:chr15:23561300-23560849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-633
               
               
               Cow position:chr15:3892861-3892344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:345
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):60, 339

               
               
               Conread position:160-644
               
               
               Cow position:chr15:14757460-14756936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:360
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):52, 271

               
               
               Conread position:160-780
               
               
               Cow position:chr15:10569924-10569295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:433
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):61, 45

               
               
               Conread position:160-815
               
               
               Cow position:chr15:50870725-50870030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:435
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):64, 584

               
               
               Conread position:160-828
               
               
               Cow position:chr15:26933318-26932598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 103

               
               
               Conread position:160-831
               
               
               Cow position:chr15:12456397-12455713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 100

               
               
               Conread position:160-834
               
               
               Cow position:chr15:6805987-6805264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 41

               
               
               Conread position:160-834
               
               
               Cow position:chr15:21156726-21156011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:461
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):41, 117

               
               
               Conread position:160-834
               
               
               Cow position:chr15:42940185-42939466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 213

               
               
               Conread position:161-335
               
               
               Cow position:chr15:21831472-21831286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:161-635
               
               
               Cow position:chr15:32877281-32876786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:319
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):64, 7

               
               
               Conread position:161-767
               
               
               Cow position:chr15:34064217-34063568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 88

               
               
               Conread position:161-823
               
               
               Cow position:chr15:44297604-44298297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 117

               
               
               Conread position:161-825
               
               
               Cow position:chr15:3257239-3257949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 250

               
               
               Conread position:161-826
               
               
               Cow position:chr15:11628674-11627962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 353

               
               
               Conread position:161-834
               
               
               Cow position:chr15:4642475-4641753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 374

               
               
               Conread position:161-834
               
               
               Cow position:chr15:7841595-7840884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 27

               
               
               Conread position:161-834
               
               
               Cow position:chr15:21532864-21533581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 584

               
               
               Conread position:162-824
               
               
               Cow position:chr15:4689303-4688592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 460

               
               
               Conread position:163-571
               
               
               Cow position:chr15:38683886-38684309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 38

               
               
               Conread position:163-814
               
               
               Cow position:chr15:336949-336263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:443
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):75, 114

               
               
               Conread position:164-451
               
               
               Cow position:chr15:17214727-17215036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):66, 5

               
               
               Conread position:164-821
               
               
               Cow position:chr15:4859679-4860375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:455
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):56, 183

               
               
               Conread position:164-834
               
               
               Cow position:chr15:1774717-1773996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 587

               
               
               Conread position:165-402
               
               
               Cow position:chr15:39083031-39083285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 97

               
               
               Conread position:165-560
               
               
               Cow position:chr15:6564164-6563733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):57, 425

               
               
               Conread position:166-436
               
               
               Cow position:chr15:31086242-31086530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:168-819
               
               
               Cow position:chr15:44724-44039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:440
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):37, 320

               
               
               Conread position:169-787
               
               
               Cow position:chr15:40343983-40344653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 270

               
               
               Conread position:171-540
               
               
               Cow position:chr15:16515468-16515069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):54, 104

               
               
               Conread position:171-825
               
               
               Cow position:chr15:24797099-24796429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 100

               
               
               Conread position:171-828
               
               
               Cow position:chr15:18019122-18019825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 574

               
               
               Conread position:171-834
               
               
               Cow position:chr15:22539574-22540267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 45

               
               
               Conread position:172-462
               
               
               Cow position:chr15:47842353-47842034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):18, 303

               
               
               Conread position:174-571
               
               
               Cow position:chr15:5198218-5197777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 312

               
               
               Conread position:176-799
               
               
               Cow position:chr15:2020512-2019874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:428
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):70, 49

               
               
               Conread position:177-692
               
               
               Cow position:chr15:9909850-9910410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:366
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):53, 452

               
               
               Conread position:180-829
               
               
               Cow position:chr15:4895140-4895811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 118

               
               
               Conread position:188-777
               
               
               Cow position:chr15:17236643-17237277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 44

               
               
               Conread position:189-457
               
               
               Cow position:chr15:6945198-6945488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):36, 79

               
               
               Conread position:189-644
               
               
               Cow position:chr15:6489015-6488514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:324
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):34, 88

               
               
               Conread position:189-743
               
               
               Cow position:chr15:2080578-2079972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 157

               
               
               Conread position:189-788
               
               
               Cow position:chr15:33527325-33527966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 201

               
               
               Conread position:189-832
               
               
               Cow position:chr15:30045655-30044949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 367

               
               
               Conread position:191-540
               
               
               Cow position:chr15:6367244-6367628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:267
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):39, 293

               
               
               Conread position:201-801
               
               
               Cow position:chr15:37632231-37631600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:410
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):22, 267

               
               
               Conread position:208-685
               
               
               Cow position:chr15:42418731-42419248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:335
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 57

               
               
               Conread position:214-611
               
               
               Cow position:chr15:22162060-22162480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):8, 199

               
               
               Conread position:214-834
               
               
               Cow position:chr15:17267729-17267063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 280

               
               
               Conread position:215-825
               
               
               Cow position:chr15:11574806-11575449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 286

               
               
               Conread position:221-520
               
               
               Cow position:chr15:20647372-20647047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:221-542
               
               
               Cow position:chr15:22532946-22533294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):15, 141

               
               
               Conread position:221-807
               
               
               Cow position:chr15:33304589-33305210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 154

               
               
               Conread position:222-824
               
               
               Cow position:chr15:10476923-10477562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:223-633
               
               
               Cow position:chr15:561932-561485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:301
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):13, 304

               
               
               Conread position:223-818
               
               
               Cow position:chr15:35405178-35404543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 278

               
               
               Conread position:229-815
               
               
               Cow position:chr15:23274415-23275006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 17

               
               
               Conread position:235-829
               
               
               Cow position:chr15:18579914-18579282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 327

               
               
               Conread position:236-818
               
               
               Cow position:chr15:36622480-36623094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 147

               
               
               Conread position:243-834
               
               
               Cow position:chr15:33753098-33753730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 498

               
               
               Conread position:244-513
               
               
               Cow position:chr15:33455545-33455261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):46, 151

               
               
               Conread position:245-635
               
               
               Cow position:chr15:5003934-5004328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):89, 35

               
               
               Conread position:259-834
               
               
               Cow position:chr15:6281808-6281203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 202

               
               
               Conread position:260-475
               
               
               Cow position:chr15:30811783-30811555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):82, 99

               
               
               Conread position:260-796
               
               
               Cow position:chr15:36355905-36356476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 353

               
               
               Conread position:268-834
               
               
               Cow position:chr15:23774453-23773856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 160

               
               
               Conread position:269-834
               
               
               Cow position:chr15:4629095-4629686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 215

               
               
               Conread position:277-825
               
               
               Cow position:chr15:32717476-32718050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:374
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):62, 11

               
               
               Conread position:288-511
               
               
               Cow position:chr15:29811614-29811852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):51, 188

               
               
               Conread position:288-635
               
               
               Cow position:chr15:42597121-42597498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:289-831
               
               
               Cow position:chr15:8753990-8753431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:369
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):50, 440

               
               
               Conread position:289-833
               
               
               Cow position:chr15:39446174-39446749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:366
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):46, 227

               
               
               Conread position:290-528
               
               
               Cow position:chr15:13388220-13388473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):41, 17

               
               
               Conread position:290-768
               
               
               Cow position:chr15:6043728-6043241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:323
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):92, 151

               
               
               Conread position:290-807
               
               
               Cow position:chr15:17681163-17681700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:359
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:290-834
               
               
               Cow position:chr15:4815672-4815110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 100

               
               
               Conread position:290-834
               
               
               Cow position:chr15:9522070-9522652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:291-804
               
               
               Cow position:chr15:33700632-33700088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 348

               
               
               Conread position:291-830
               
               
               Cow position:chr15:21662616-21663187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 444

               
               
               Conread position:292-522
               
               
               Cow position:chr15:29273119-29273361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):43, 152

               
               
               Conread position:292-645
               
               
               Cow position:chr15:2560546-2560163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:292-825
               
               
               Cow position:chr15:51910412-51910975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 72

               
               
               Conread position:292-834
               
               
               Cow position:chr15:16801401-16800824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 443

               
               
               Conread position:292-834
               
               
               Cow position:chr15:25554266-25553692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 313

               
               
               Conread position:294-825
               
               
               Cow position:chr15:4077008-4077575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 434

               
               
               Conread position:294-825
               
               
               Cow position:chr15:31269749-31270312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 77

               
               
               Conread position:294-834
               
               
               Cow position:chr15:17296124-17295557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 111

               
               
               Conread position:309-795
               
               
               Cow position:chr15:37373024-37373535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:344
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):76, 12

               
               
               Conread position:313-822
               
               
               Cow position:chr15:21831039-21830501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 21

               
               
               Conread position:315-623
               
               
               Cow position:chr15:43267203-43266872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:315-825
               
               
               Cow position:chr15:2664490-2663947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 418

               
               
               Conread position:316-831
               
               
               Cow position:chr15:2632609-2633156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:362
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):65, 319

               
               
               Conread position:335-814
               
               
               Cow position:chr15:6658033-6658545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 401

               
               
               Conread position:336-580
               
               
               Cow position:chr15:21644748-21645008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 81

               
               
               Conread position:336-645
               
               
               Cow position:chr15:21939944-21940279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:336-815
               
               
               Cow position:chr15:8102523-8102025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 176

               
               
               Conread position:339-693
               
               
               Cow position:chr15:661857-662237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):46, 86

               
               
               Conread position:339-834
               
               
               Cow position:chr15:13430896-13430374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 114

               
               
               Conread position:341-579
               
               
               Cow position:chr15:26077798-26077548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):43, 144

               
               
               Conread position:341-796
               
               
               Cow position:chr15:4674407-4673921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 303

               
               
               Conread position:341-831
               
               
               Cow position:chr15:11290707-11291207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 84

               
               
               Conread position:341-833
               
               
               Cow position:chr15:2021376-2021892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 35

               
               
               Conread position:341-834
               
               
               Cow position:chr15:1601640-1601136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:344
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:342-778
               
               
               Cow position:chr15:5197423-5196955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:312
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):44, 355

               
               
               Conread position:342-834
               
               
               Cow position:chr15:32490817-32491338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 384

               
               
               Conread position:345-725
               
               
               Cow position:chr15:1298586-1298994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 379

               
               
               Conread position:347-813
               
               
               Cow position:chr15:17123668-17123176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:327
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):38, 56

               
               
               Conread position:361-824
               
               
               Cow position:chr15:2952100-2952590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:324
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):28, 96

               
               
               Conread position:365-834
               
               
               Cow position:chr15:31585348-31585848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 366

               
               
               Conread position:374-823
               
               
               Cow position:chr15:21366583-21367058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:315
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):42, 32

               
               
               Conread position:380-767
               
               
               Cow position:chr15:15262669-15263061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:259
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):55, 33

               
               
               Conread position:384-819
               
               
               Cow position:chr15:4654494-4654034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 342

               
               
               Conread position:388-825
               
               
               Cow position:chr15:3152549-3153005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:308
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):24, 121

               
               
               Conread position:388-834
               
               
               Cow position:chr15:7058741-7058277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 78

               
               
               Conread position:421-709
               
               
               Cow position:chr15:26079475-26079785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 295

               
               
               Conread position:421-761
               
               
               Cow position:chr15:49242331-49242693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:251
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):10, 301

               
               
               Conread position:421-806
               
               
               Cow position:chr15:32647343-32646938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 40

               
               
               Conread position:421-823
               
               
               Cow position:chr15:4380340-4380761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 34

               
               
               Conread position:421-834
               
               
               Cow position:chr15:6762111-6762546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr15:24090813-24090378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr15:42943627-42944056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 47

               
               
               Conread position:422-694
               
               
               Cow position:chr15:25909623-25909916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):7, 86

               
               
               Conread position:423-764
               
               
               Cow position:chr15:24048257-24047888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):56, 271

               
               
               Conread position:426-834
               
               
               Cow position:chr15:15649451-15649865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):99, 142

               
               
               Conread position:430-825
               
               
               Cow position:chr15:24286549-24286942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):94, 45

               
               
               Conread position:434-829
               
               
               Cow position:chr15:2898026-2898434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 254

               
               
               Conread position:441-818
               
               
               Cow position:chr15:2796157-2795761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:451-831
               
               
               Cow position:chr15:503266-502867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 267

               
               
               Conread position:456-644
               
               
               Cow position:chr15:24969001-24969203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:488-807
               
               
               Cow position:chr15:4730398-4730068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:489-741
               
               
               Cow position:chr15:20458236-20457970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:491-787
               
               
               Cow position:chr15:461907-461593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-825
               
               
               Cow position:chr15:34518042-34517698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):34, 96

               
               
               Conread position:491-834
               
               
               Cow position:chr15:23798044-23797679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:258
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):34, 229

               
               
               Conread position:491-834
               
               
               Cow position:chr15:32858777-32858416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 229

               
               
               Conread position:491-836
               
               
               Cow position:chr15:44666299-44666663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:254
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):34, 232

               
               
               Conread position:497-740
               
               
               Cow position:chr15:33455302-33455055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 46

               
               
               Conread position:505-803
               
               
               Cow position:chr15:4103878-4104180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):9, 22

               
               
               Conread position:505-870
               
               
               Cow position:chr15:4918072-4917702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:262
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:514-782
               
               
               Cow position:chr15:53341871-53341603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):58, 20

               
               
               Conread position:514-815
               
               
               Cow position:chr15:16340808-16341096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:514-834
               
               
               Cow position:chr15:50119867-50120195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:541-825
               
               
               Cow position:chr15:335264-334972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):29, 201

               
               
               Conread position:545-831
               
               
               Cow position:chr15:21452773-21452479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):28, 161

               
               
               Conread position:568-834
               
               
               Cow position:chr15:20404798-20405066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):67, 29

               
               
               Conread position:569-778
               
               
               Cow position:chr15:16515014-16514795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 102

               
               
               Conread position:575-834
               
               
               Cow position:chr15:1328653-1328393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):73, 123

               
               
               Conread position:579-825
               
               
               Cow position:chr15:4768991-4768741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):69, 127

               
               
               Conread position:584-833
               
               
               Cow position:chr15:53211930-53212175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):62, 102

               
               
               Conread position:591-825
               
               
               Cow position:chr15:18661115-18660876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):50, 116

               
               
               Conread position:591-834
               
               
               Cow position:chr15:13388569-13388822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):57, 111

               
               
               Conread position:591-834
               
               
               Cow position:chr15:16966701-16966945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):55, 29

               
               
               Conread position:591-834
               
               
               Cow position:chr15:21645305-21645553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-834
               
               
               Cow position:chr15:25165488-25165736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:592-800
               
               
               Cow position:chr15:28559240-28559026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):22, 9

               
               
               Conread position:606-808
               
               
               Cow position:chr15:42726996-42726790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 64

               
               
               Conread position:609-814
               
               
               Cow position:chr15:7932420-7932210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 93

               
               
               Conread position:609-814
               
               
               Cow position:chr15:29003675-29003475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:620-834
               
               
               Cow position:chr15:14579383-14579595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 87

               
               
               Conread position:645-822
               
               
               Cow position:chr15:3792156-3792332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:645-834
               
               
               Cow position:chr15:23708774-23708962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:645-834
               
               
               Cow position:chr15:52977695-52977507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:647-834
               
               
               Cow position:chr15:3892308-3892115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):47, 136

               
               
               Conread position:650-825
               
               
               Cow position:chr15:6381317-6381488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:663-825
               
               
               Cow position:chr15:6488178-6488018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:666-814
               
               
               Cow position:chr15:30984240-30984393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):50, 30

               
               
               Conread position:666-824
               
               
               Cow position:chr15:6493641-6493484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr15:10736275-10736108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:140
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr15:10826193-10826026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:667-825
               
               
               Cow position:chr15:6482208-6482052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:668-825
               
               
               Cow position:chr15:32741682-32741526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 34

               
               
               Conread position:668-834
               
               
               Cow position:chr15:20779482-20779638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):119, 28

               
               
               Conread position:670-828
               
               
               Cow position:chr15:53574960-53575114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:671-834
               
               
               Cow position:chr15:52209252-52209090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:674-833
               
               
               Cow position:chr15:29341338-29341498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):27, 108

               
               
               Conread position:675-834
               
               
               Cow position:chr15:6153223-6153381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:680-834
               
               
               Cow position:chr15:11269706-11269553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:696-819
               
               
               Cow position:chr15:39419038-39418921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:697-834
               
               
               Cow position:chr15:50308813-50308950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr15:25204323-25204459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:701-834
               
               
               Cow position:chr15:24297865-24297736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:701-834
               
               
               Cow position:chr15:31364149-31364016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:704-835
               
               
               Cow position:chr15:20353731-20353861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):92, 31

               
               
               Conread position:710-882
               
               
               Cow position:chr15:23560524-23560358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:1-728
               
               
               Cow position:chr16:1957631-1958415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:789
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 73

               
               
               Conread position:62-825
               
               
               Cow position:chr16:47404418-47403595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:832
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 48

               
               
               Conread position:73-221
               
               
               Cow position:chr16:49449845-49449995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):74, 34

               
               
               Conread position:73-295
               
               
               Cow position:chr16:29379760-29379520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):75, 37

               
               
               Conread position:73-337
               
               
               Cow position:chr16:25483864-25483570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:73-382
               
               
               Cow position:chr16:23877507-23877159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:73-382
               
               
               Cow position:chr16:34021819-34022168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-446
               
               
               Cow position:chr16:26671104-26671508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:243
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-453
               
               
               Cow position:chr16:2962824-2963253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:291
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:73-453
               
               
               Cow position:chr16:19062867-19062440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 34

               
               
               Conread position:73-453
               
               
               Cow position:chr16:49094071-49094493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-456
               
               
               Cow position:chr16:15370008-15369591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 34

               
               
               Conread position:73-520
               
               
               Cow position:chr16:54703501-54703032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:321
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):22, 17

               
               
               Conread position:73-522
               
               
               Cow position:chr16:54231320-54231808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 34

               
               
               Conread position:73-602
               
               
               Cow position:chr16:24987470-24988065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:401
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:73-720
               
               
               Cow position:chr16:22798680-22799388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:73-782
               
               
               Cow position:chr16:23248929-23249715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:790
               
               
               Alignm identity:526
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 18

               
               
               Conread position:73-804
               
               
               Cow position:chr16:16540430-16539649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:543
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:73-808
               
               
               Cow position:chr16:5895463-5894670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-822
               
               
               Cow position:chr16:4757041-4756239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:811
               
               
               Alignm identity:555
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:73-825
               
               
               Cow position:chr16:14100872-14100065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:812
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 39

               
               
               Conread position:73-827
               
               
               Cow position:chr16:55151356-55150564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:814
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr16:15979345-15980175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:834
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:73-834
               
               
               Cow position:chr16:47773288-47772464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:834
               
               
               Alignm identity:610
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr16:52527261-52526434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:832
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 40

               
               
               Conread position:74-695
               
               
               Cow position:chr16:25043079-25042395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:449
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):25, 38

               
               
               Conread position:74-727
               
               
               Cow position:chr16:600444-599738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:481
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):27, 39

               
               
               Conread position:74-834
               
               
               Cow position:chr16:12160261-12161077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:820
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 33

               
               
               Conread position:74-835
               
               
               Cow position:chr16:4972525-4973321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:810
               
               
               Alignm identity:539
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:75-337
               
               
               Cow position:chr16:15408376-15408658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):68, 9

               
               
               Conread position:99-832
               
               
               Cow position:chr16:31426047-31425258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:798
               
               
               Alignm identity:582
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:109-719
               
               
               Cow position:chr16:52855883-52856525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:122-834
               
               
               Cow position:chr16:41034271-41033503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 634

               
               
               Conread position:123-736
               
               
               Cow position:chr16:5416308-5416967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 34

               
               
               Conread position:123-834
               
               
               Cow position:chr16:192970-193733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:768
               
               
               Alignm identity:537
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 417

               
               
               Conread position:124-834
               
               
               Cow position:chr16:44101-43351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:767
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 46

               
               
               Conread position:128-452
               
               
               Cow position:chr16:7673413-7673751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):10, 221

               
               
               Conread position:137-440
               
               
               Cow position:chr16:20475654-20475320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):16, 23

               
               
               Conread position:139-410
               
               
               Cow position:chr16:49169938-49170224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):10, 174

               
               
               Conread position:139-453
               
               
               Cow position:chr16:22320337-22320685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):13, 165

               
               
               Conread position:139-466
               
               
               Cow position:chr16:23403762-23403406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):83, 17

               
               
               Conread position:142-742
               
               
               Cow position:chr16:5435771-5435119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:142-819
               
               
               Cow position:chr16:2232781-2233503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:142-834
               
               
               Cow position:chr16:41483-40739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:752
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 18

               
               
               Conread position:142-834
               
               
               Cow position:chr16:3332835-3332114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 10

               
               
               Conread position:142-834
               
               
               Cow position:chr16:4461382-4462109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:143-284
               
               
               Cow position:chr16:30516482-30516632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-323
               
               
               Cow position:chr16:31585558-31585754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-327
               
               
               Cow position:chr16:3597089-3597284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-337
               
               
               Cow position:chr16:16596680-16596469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-337
               
               
               Cow position:chr16:20234686-20234893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 10

               
               
               Conread position:143-337
               
               
               Cow position:chr16:49188326-49188526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-337
               
               
               Cow position:chr16:51042568-51042773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr16:24752982-24753242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr16:27537959-27537699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-387
               
               
               Cow position:chr16:47518254-47517989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:143-389
               
               
               Cow position:chr16:22810629-22810887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-398
               
               
               Cow position:chr16:48956036-48955771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 57

               
               
               Conread position:143-399
               
               
               Cow position:chr16:5756880-5756609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-407
               
               
               Cow position:chr16:10866701-10866412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):79, 18

               
               
               Conread position:143-449
               
               
               Cow position:chr16:19409410-19409746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-452
               
               
               Cow position:chr16:23059146-23059482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 13

               
               
               Conread position:143-453
               
               
               Cow position:chr16:16942661-16942320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr16:49096909-49096568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr16:52952295-52952636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-459
               
               
               Cow position:chr16:42079424-42079751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-461
               
               
               Cow position:chr16:44689211-44689547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:143-465
               
               
               Cow position:chr16:48494974-48495325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-467
               
               
               Cow position:chr16:32118522-32118169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-467
               
               
               Cow position:chr16:44450888-44450532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-469
               
               
               Cow position:chr16:13989228-13988879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:143-517
               
               
               Cow position:chr16:48341263-48341669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-519
               
               
               Cow position:chr16:46385603-46386003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-522
               
               
               Cow position:chr16:5350563-5350975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-522
               
               
               Cow position:chr16:50190177-50190581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:143-537
               
               
               Cow position:chr16:29538868-29539293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:297
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-540
               
               
               Cow position:chr16:53509576-53510013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:294
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:143-548
               
               
               Cow position:chr16:7136905-7137338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:305
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-562
               
               
               Cow position:chr16:14029211-14029658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 10

               
               
               Conread position:143-580
               
               
               Cow position:chr16:5488816-5488336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:329
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-631
               
               
               Cow position:chr16:47017823-47018338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-677
               
               
               Cow position:chr16:49126766-49127327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:143-685
               
               
               Cow position:chr16:25075538-25074943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-693
               
               
               Cow position:chr16:12485355-12485958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-721
               
               
               Cow position:chr16:24615130-24615750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-734
               
               
               Cow position:chr16:7303702-7303058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-748
               
               
               Cow position:chr16:20278785-20278128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-766
               
               
               Cow position:chr16:15349217-15349877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-789
               
               
               Cow position:chr16:49742584-49743261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-796
               
               
               Cow position:chr16:29158545-29157882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-804
               
               
               Cow position:chr16:56913296-56913997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr16:20204925-20204212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr16:23986258-23985523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr16:49230364-49231069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 18

               
               
               Conread position:143-825
               
               
               Cow position:chr16:49253323-49254027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-831
               
               
               Cow position:chr16:29036804-29036099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr16:417838-417096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr16:840215-839486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr16:1734681-1733944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr16:3148096-3148828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr16:4427035-4426293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 9

               
               
               Conread position:143-834
               
               
               Cow position:chr16:10441183-10440441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr16:14662178-14662906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:143-834
               
               
               Cow position:chr16:26666655-26665906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr16:28193356-28194098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr16:40293225-40293968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr16:43894318-43895060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr16:51087727-51086985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:144-329
               
               
               Cow position:chr16:48933004-48933201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-357
               
               
               Cow position:chr16:45158026-45158263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):79, 12

               
               
               Conread position:144-367
               
               
               Cow position:chr16:51043045-51042805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:144-454
               
               
               Cow position:chr16:54228339-54228685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:144-551
               
               
               Cow position:chr16:42733347-42733785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:289
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-580
               
               
               Cow position:chr16:49142126-49142608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:144-765
               
               
               Cow position:chr16:38177704-38177067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:418
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:144-823
               
               
               Cow position:chr16:13043172-13042456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 12

               
               
               Conread position:144-832
               
               
               Cow position:chr16:25893447-25892734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 17

               
               
               Conread position:144-834
               
               
               Cow position:chr16:55579581-55578874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:471
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):81, 15

               
               
               Conread position:145-337
               
               
               Cow position:chr16:23472165-23471958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-369
               
               
               Cow position:chr16:25254406-25254165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):75, 11

               
               
               Conread position:145-380
               
               
               Cow position:chr16:40913557-40913305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:145-410
               
               
               Cow position:chr16:24229179-24228893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:145-480
               
               
               Cow position:chr16:8367784-8368149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:145-644
               
               
               Cow position:chr16:702192-701658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:348
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:145-645
               
               
               Cow position:chr16:684662-685191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:342
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):14, 467

               
               
               Conread position:145-645
               
               
               Cow position:chr16:14040368-14039822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-675
               
               
               Cow position:chr16:44704558-44703983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:368
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:145-824
               
               
               Cow position:chr16:28473009-28473711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:467
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):8, 208

               
               
               Conread position:145-825
               
               
               Cow position:chr16:12535025-12535727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:145-825
               
               
               Cow position:chr16:13421983-13422708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:145-834
               
               
               Cow position:chr16:37477918-37478658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:145-834
               
               
               Cow position:chr16:39616158-39615441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:545
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr16:43562451-43563190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 290

               
               
               Conread position:146-337
               
               
               Cow position:chr16:10202990-10203196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:146-363
               
               
               Cow position:chr16:18678611-18678381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):34, 12

               
               
               Conread position:146-410
               
               
               Cow position:chr16:825411-825125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):78, 52

               
               
               Conread position:146-452
               
               
               Cow position:chr16:6389712-6390051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:146-522
               
               
               Cow position:chr16:7504375-7503972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 13

               
               
               Conread position:146-824
               
               
               Cow position:chr16:16032826-16032104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 96

               
               
               Conread position:146-824
               
               
               Cow position:chr16:45609352-45608627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 355

               
               
               Conread position:146-834
               
               
               Cow position:chr16:3769064-3769808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 612

               
               
               Conread position:147-382
               
               
               Cow position:chr16:20967942-20968202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-382
               
               
               Cow position:chr16:34809312-34809054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-410
               
               
               Cow position:chr16:18949018-18948740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 116

               
               
               Conread position:147-453
               
               
               Cow position:chr16:51641190-51640853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-454
               
               
               Cow position:chr16:28864275-28864606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 173

               
               
               Conread position:147-467
               
               
               Cow position:chr16:4079025-4079368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):12, 29

               
               
               Conread position:147-480
               
               
               Cow position:chr16:15179609-15179268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 33

               
               
               Conread position:147-528
               
               
               Cow position:chr16:29512713-29512303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 63

               
               
               Conread position:147-571
               
               
               Cow position:chr16:27013337-27012876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 47

               
               
               Conread position:147-580
               
               
               Cow position:chr16:29050587-29050109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:328
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:147-580
               
               
               Cow position:chr16:41834808-41834346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:320
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):12, 134

               
               
               Conread position:147-611
               
               
               Cow position:chr16:15485732-15485222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:341
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):12, 330

               
               
               Conread position:147-624
               
               
               Cow position:chr16:7457044-7457565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:357
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):12, 34

               
               
               Conread position:147-635
               
               
               Cow position:chr16:54322467-54323012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:372
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):12, 375

               
               
               Conread position:147-654
               
               
               Cow position:chr16:18745094-18745642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 56

               
               
               Conread position:147-714
               
               
               Cow position:chr16:1563444-1564063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 572

               
               
               Conread position:147-726
               
               
               Cow position:chr16:37670566-37671185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 264

               
               
               Conread position:147-796
               
               
               Cow position:chr16:39033410-39034084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 410

               
               
               Conread position:147-815
               
               
               Cow position:chr16:23533057-23533776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 339

               
               
               Conread position:147-825
               
               
               Cow position:chr16:15188001-15187279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 424

               
               
               Conread position:147-825
               
               
               Cow position:chr16:15570708-15569982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 185

               
               
               Conread position:147-826
               
               
               Cow position:chr16:8813162-8813891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 329

               
               
               Conread position:147-829
               
               
               Cow position:chr16:25444819-25444086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 607

               
               
               Conread position:147-834
               
               
               Cow position:chr16:2724281-2725020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 595

               
               
               Conread position:147-834
               
               
               Cow position:chr16:11632901-11633641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 609

               
               
               Conread position:147-834
               
               
               Cow position:chr16:17142342-17141610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:536
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 594

               
               
               Conread position:147-834
               
               
               Cow position:chr16:27730439-27731179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 17

               
               
               Conread position:147-834
               
               
               Cow position:chr16:28206168-28206909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 573

               
               
               Conread position:147-834
               
               
               Cow position:chr16:46101676-46102414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 362

               
               
               Conread position:148-432
               
               
               Cow position:chr16:44972801-44973122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-795
               
               
               Cow position:chr16:25174176-25173492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 327

               
               
               Conread position:148-801
               
               
               Cow position:chr16:26500572-26499918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 111

               
               
               Conread position:148-825
               
               
               Cow position:chr16:15495393-15494669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:148-829
               
               
               Cow position:chr16:25454536-25455253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 76

               
               
               Conread position:150-528
               
               
               Cow position:chr16:44676291-44675879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:290
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):72, 9

               
               
               Conread position:151-723
               
               
               Cow position:chr16:41576155-41575568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 8

               
               
               Conread position:151-793
               
               
               Cow position:chr16:16096138-16095455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 587

               
               
               Conread position:155-479
               
               
               Cow position:chr16:48010478-48010815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 157

               
               
               Conread position:155-760
               
               
               Cow position:chr16:5844849-5844195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:428
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):65, 360

               
               
               Conread position:158-382
               
               
               Cow position:chr16:2426172-2426418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr16:26389413-26389175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):9, 84

               
               
               Conread position:158-382
               
               
               Cow position:chr16:29107213-29107459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr16:39788073-39788319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-409
               
               
               Cow position:chr16:43813483-43813217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):62, 228

               
               
               Conread position:158-410
               
               
               Cow position:chr16:15813013-15812735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-431
               
               
               Cow position:chr16:14758118-14757814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:158-442
               
               
               Cow position:chr16:3012045-3011733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-442
               
               
               Cow position:chr16:14570506-14570207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 94

               
               
               Conread position:158-453
               
               
               Cow position:chr16:20502962-20502639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr16:26658896-26658569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr16:35342570-35342897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:158-456
               
               
               Cow position:chr16:42745553-42745877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):64, 277

               
               
               Conread position:158-482
               
               
               Cow position:chr16:8883864-8883511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):64, 337

               
               
               Conread position:158-513
               
               
               Cow position:chr16:23772744-23773133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-520
               
               
               Cow position:chr16:23737584-23737228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):146, 42

               
               
               Conread position:158-543
               
               
               Cow position:chr16:24147571-24147165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 50

               
               
               Conread position:158-558
               
               
               Cow position:chr16:49515850-49516289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 388

               
               
               Conread position:158-571
               
               
               Cow position:chr16:7385696-7385239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:313
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):64, 329

               
               
               Conread position:158-602
               
               
               Cow position:chr16:2960610-2960118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:333
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-602
               
               
               Cow position:chr16:18212264-18212756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:336
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-637
               
               
               Cow position:chr16:5666030-5665502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:356
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-645
               
               
               Cow position:chr16:25880246-25879712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:357
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:158-658
               
               
               Cow position:chr16:49780019-49780568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:365
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-677
               
               
               Cow position:chr16:13721657-13722231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:381
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-714
               
               
               Cow position:chr16:15904290-15904882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 302

               
               
               Conread position:158-728
               
               
               Cow position:chr16:45464989-45465609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 586

               
               
               Conread position:158-734
               
               
               Cow position:chr16:18650653-18651280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 382

               
               
               Conread position:158-755
               
               
               Cow position:chr16:26627683-26627035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 589

               
               
               Conread position:158-767
               
               
               Cow position:chr16:50712508-50713170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 591

               
               
               Conread position:158-782
               
               
               Cow position:chr16:6677648-6676974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 592

               
               
               Conread position:158-800
               
               
               Cow position:chr16:5525169-5525868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 58

               
               
               Conread position:158-815
               
               
               Cow position:chr16:20634313-20634993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 27

               
               
               Conread position:158-819
               
               
               Cow position:chr16:4342987-4343685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 109

               
               
               Conread position:158-819
               
               
               Cow position:chr16:18975799-18975086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 499

               
               
               Conread position:158-824
               
               
               Cow position:chr16:41036113-41036812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 129

               
               
               Conread position:158-825
               
               
               Cow position:chr16:34483078-34482374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 128

               
               
               Conread position:158-825
               
               
               Cow position:chr16:42211427-42210707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-825
               
               
               Cow position:chr16:46555353-46554633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr16:12651851-12651130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 199

               
               
               Conread position:158-834
               
               
               Cow position:chr16:15312212-15311485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 593

               
               
               Conread position:158-834
               
               
               Cow position:chr16:16149817-16150545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-834
               
               
               Cow position:chr16:19081977-19081254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 241

               
               
               Conread position:158-834
               
               
               Cow position:chr16:24209467-24210195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 344

               
               
               Conread position:158-834
               
               
               Cow position:chr16:24407843-24407112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 337

               
               
               Conread position:158-834
               
               
               Cow position:chr16:30052866-30052151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 29

               
               
               Conread position:159-409
               
               
               Cow position:chr16:14722342-14722609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):65, 130

               
               
               Conread position:159-578
               
               
               Cow position:chr16:25169155-25168704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 161

               
               
               Conread position:159-738
               
               
               Cow position:chr16:45534383-45533766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 89

               
               
               Conread position:159-744
               
               
               Cow position:chr16:40879522-40878884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 588

               
               
               Conread position:160-387
               
               
               Cow position:chr16:3632993-3632746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:160-410
               
               
               Cow position:chr16:3027340-3027084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):122, 52

               
               
               Conread position:160-464
               
               
               Cow position:chr16:7566994-7566660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):62, 6

               
               
               Conread position:160-788
               
               
               Cow position:chr16:10372507-10373186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 310

               
               
               Conread position:160-794
               
               
               Cow position:chr16:28468194-28468881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 591

               
               
               Conread position:160-801
               
               
               Cow position:chr16:24240471-24241165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 598

               
               
               Conread position:160-806
               
               
               Cow position:chr16:45654646-45655358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 531

               
               
               Conread position:160-809
               
               
               Cow position:chr16:19722854-19722186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:437
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):62, 81

               
               
               Conread position:160-818
               
               
               Cow position:chr16:41163847-41164553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 51

               
               
               Conread position:160-825
               
               
               Cow position:chr16:14441294-14440581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 61

               
               
               Conread position:160-825
               
               
               Cow position:chr16:21018487-21017770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 56

               
               
               Conread position:160-832
               
               
               Cow position:chr16:43844041-43844752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:446
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):51, 245

               
               
               Conread position:160-834
               
               
               Cow position:chr16:2480230-2480939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 22

               
               
               Conread position:160-834
               
               
               Cow position:chr16:7467537-7466816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 437

               
               
               Conread position:160-834
               
               
               Cow position:chr16:27592895-27593620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 591

               
               
               Conread position:160-834
               
               
               Cow position:chr16:28022141-28022850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 209

               
               
               Conread position:161-627
               
               
               Cow position:chr16:2305288-2304774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:345
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):63, 51

               
               
               Conread position:161-704
               
               
               Cow position:chr16:15805230-15804638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:381
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):61, 14

               
               
               Conread position:161-766
               
               
               Cow position:chr16:48411572-48410904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:161-782
               
               
               Cow position:chr16:41623783-41624420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 64

               
               
               Conread position:161-792
               
               
               Cow position:chr16:47367897-47367242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 92

               
               
               Conread position:161-792
               
               
               Cow position:chr16:53225408-53226073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 13

               
               
               Conread position:163-834
               
               
               Cow position:chr16:25263520-25262818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:440
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 147

               
               
               Conread position:164-522
               
               
               Cow position:chr16:23810440-23810054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):61, 45

               
               
               Conread position:165-435
               
               
               Cow position:chr16:6379715-6380015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:165-693
               
               
               Cow position:chr16:25157483-25158051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 334

               
               
               Conread position:167-825
               
               
               Cow position:chr16:25344900-25344189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 588

               
               
               Conread position:168-398
               
               
               Cow position:chr16:23872255-23872498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):51, 122

               
               
               Conread position:168-512
               
               
               Cow position:chr16:9786232-9785858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:264
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):53, 95

               
               
               Conread position:170-808
               
               
               Cow position:chr16:42073975-42074664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 553

               
               
               Conread position:171-522
               
               
               Cow position:chr16:23563359-23562987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:249
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:171-522
               
               
               Cow position:chr16:49577892-49577524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 262

               
               
               Conread position:172-834
               
               
               Cow position:chr16:11054887-11054198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 91

               
               
               Conread position:173-787
               
               
               Cow position:chr16:19671364-19671987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 48

               
               
               Conread position:173-825
               
               
               Cow position:chr16:26654572-26653880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 301

               
               
               Conread position:176-634
               
               
               Cow position:chr16:28267805-28268308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:187-834
               
               
               Cow position:chr16:26990039-26990737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 81

               
               
               Conread position:188-834
               
               
               Cow position:chr16:2407991-2408692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 165

               
               
               Conread position:189-480
               
               
               Cow position:chr16:7541380-7541063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):28, 270

               
               
               Conread position:189-834
               
               
               Cow position:chr16:14351783-14352478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 564

               
               
               Conread position:190-571
               
               
               Cow position:chr16:18426290-18425877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:201-851
               
               
               Cow position:chr16:10859446-10860129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 122

               
               
               Conread position:206-410
               
               
               Cow position:chr16:42254446-42254661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:208-746
               
               
               Cow position:chr16:37445831-37446409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:376
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):24, 223

               
               
               Conread position:220-834
               
               
               Cow position:chr16:37442684-37443325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 90

               
               
               Conread position:221-557
               
               
               Cow position:chr16:25935603-25935241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):12, 348

               
               
               Conread position:221-644
               
               
               Cow position:chr16:12737141-12736676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:307
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):15, 420

               
               
               Conread position:221-834
               
               
               Cow position:chr16:23065859-23065214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 46

               
               
               Conread position:222-834
               
               
               Cow position:chr16:8871582-8872228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 286

               
               
               Conread position:227-834
               
               
               Cow position:chr16:237329-236699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 191

               
               
               Conread position:227-834
               
               
               Cow position:chr16:7673618-7674258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 6

               
               
               Conread position:228-825
               
               
               Cow position:chr16:18694115-18694757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 131

               
               
               Conread position:235-480
               
               
               Cow position:chr16:39457231-39456966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:235-819
               
               
               Cow position:chr16:44049080-44049706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 484

               
               
               Conread position:235-823
               
               
               Cow position:chr16:25964743-25964127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 190

               
               
               Conread position:235-834
               
               
               Cow position:chr16:20378289-20377664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 254

               
               
               Conread position:243-835
               
               
               Cow position:chr16:16267084-16267695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:391
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):96, 37

               
               
               Conread position:248-549
               
               
               Cow position:chr16:2224124-2224443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:248-741
               
               
               Cow position:chr16:37058194-37058714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:250-705
               
               
               Cow position:chr16:55868134-55867674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:315
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):72, 30

               
               
               Conread position:258-834
               
               
               Cow position:chr16:53612614-53612007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 371

               
               
               Conread position:261-721
               
               
               Cow position:chr16:32326673-32326179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:318
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 469

               
               
               Conread position:262-834
               
               
               Cow position:chr16:45754818-45755409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 184

               
               
               Conread position:265-597
               
               
               Cow position:chr16:5833602-5833245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:259
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):74, 23

               
               
               Conread position:266-693
               
               
               Cow position:chr16:8481824-8482276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 148

               
               
               Conread position:269-644
               
               
               Cow position:chr16:41804653-41805044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):24, 126

               
               
               Conread position:270-814
               
               
               Cow position:chr16:55911007-55911564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:359
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):22, 149

               
               
               Conread position:270-828
               
               
               Cow position:chr16:25954784-25955369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 136

               
               
               Conread position:270-834
               
               
               Cow position:chr16:45703993-45704586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 197

               
               
               Conread position:270-834
               
               
               Cow position:chr16:49219147-49219753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 223

               
               
               Conread position:271-822
               
               
               Cow position:chr16:43743815-43744364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:362
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):43, 16

               
               
               Conread position:273-834
               
               
               Cow position:chr16:19797895-19798484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:386
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):16, 135

               
               
               Conread position:288-548
               
               
               Cow position:chr16:42751926-42751653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):26, 131

               
               
               Conread position:290-540
               
               
               Cow position:chr16:4367401-4367136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 228

               
               
               Conread position:290-763
               
               
               Cow position:chr16:37454706-37455204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 191

               
               
               Conread position:290-818
               
               
               Cow position:chr16:25088398-25087826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 451

               
               
               Conread position:290-825
               
               
               Cow position:chr16:7155381-7154813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 107

               
               
               Conread position:290-834
               
               
               Cow position:chr16:41515915-41515334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:291-528
               
               
               Cow position:chr16:51400781-51401021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 92

               
               
               Conread position:291-780
               
               
               Cow position:chr16:37053818-37053294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 444

               
               
               Conread position:291-825
               
               
               Cow position:chr16:37925205-37925762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 169

               
               
               Conread position:292-579
               
               
               Cow position:chr16:29093900-29093594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 270

               
               
               Conread position:292-634
               
               
               Cow position:chr16:23711508-23711880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:247
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:292-834
               
               
               Cow position:chr16:54179585-54180151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 369

               
               
               Conread position:293-774
               
               
               Cow position:chr16:340534-340044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:332
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):52, 100

               
               
               Conread position:297-778
               
               
               Cow position:chr16:12244270-12244783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:339
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):11, 155

               
               
               Conread position:304-759
               
               
               Cow position:chr16:3349772-3349291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:322
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):35, 214

               
               
               Conread position:311-815
               
               
               Cow position:chr16:55591243-55591756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 64

               
               
               Conread position:311-834
               
               
               Cow position:chr16:41683535-41684101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:373
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):34, 417

               
               
               Conread position:315-815
               
               
               Cow position:chr16:13601888-13602411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:325
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):22, 411

               
               
               Conread position:315-825
               
               
               Cow position:chr16:21190014-21189469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 420

               
               
               Conread position:318-815
               
               
               Cow position:chr16:23673272-23672774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:326
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):21, 101

               
               
               Conread position:325-548
               
               
               Cow position:chr16:48371357-48371600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:333-788
               
               
               Cow position:chr16:14569465-14569942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:325
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):57, 303

               
               
               Conread position:335-834
               
               
               Cow position:chr16:39475566-39475041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 135

               
               
               Conread position:336-630
               
               
               Cow position:chr16:24445174-24444852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):45, 187

               
               
               Conread position:339-834
               
               
               Cow position:chr16:54287269-54286756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 231

               
               
               Conread position:340-547
               
               
               Cow position:chr16:819692-819475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:342-825
               
               
               Cow position:chr16:658675-658172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 130

               
               
               Conread position:342-829
               
               
               Cow position:chr16:31585977-31586488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 293

               
               
               Conread position:345-773
               
               
               Cow position:chr16:20201794-20201339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:307
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):25, 5

               
               
               Conread position:348-796
               
               
               Cow position:chr16:16285741-16285277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:289
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):37, 245

               
               
               Conread position:350-833
               
               
               Cow position:chr16:51041252-51040758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 41

               
               
               Conread position:353-645
               
               
               Cow position:chr16:6706001-6706319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:358-811
               
               
               Cow position:chr16:45550842-45550373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:304
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):23, 6

               
               
               Conread position:368-834
               
               
               Cow position:chr16:28167625-28168116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 35

               
               
               Conread position:373-823
               
               
               Cow position:chr16:3820056-3819578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 86

               
               
               Conread position:374-768
               
               
               Cow position:chr16:5763526-5763115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):42, 33

               
               
               Conread position:388-828
               
               
               Cow position:chr16:37486582-37487049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 340

               
               
               Conread position:418-766
               
               
               Cow position:chr16:10812688-10812333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):97, 20

               
               
               Conread position:421-764
               
               
               Cow position:chr16:27710568-27710925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:421-791
               
               
               Cow position:chr16:49170347-49170723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):9, 201

               
               
               Conread position:421-825
               
               
               Cow position:chr16:44127219-44127627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:286
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):8, 243

               
               
               Conread position:421-831
               
               
               Cow position:chr16:49530039-49529611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 297

               
               
               Conread position:421-834
               
               
               Cow position:chr16:15812705-15812270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr16:23875902-23876327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 140

               
               
               Conread position:421-834
               
               
               Cow position:chr16:26388531-26388963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 56

               
               
               Conread position:421-834
               
               
               Cow position:chr16:37146610-37146179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 10

               
               
               Conread position:422-815
               
               
               Cow position:chr16:52524926-52524520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:269
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):102, 67

               
               
               Conread position:423-834
               
               
               Cow position:chr16:20643123-20642689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 201

               
               
               Conread position:426-834
               
               
               Cow position:chr16:45816486-45816908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:276
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):27, 33

               
               
               Conread position:427-822
               
               
               Cow position:chr16:2394992-2394583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 134

               
               
               Conread position:427-825
               
               
               Cow position:chr16:53991585-53991173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:285
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):38, 26

               
               
               Conread position:427-834
               
               
               Cow position:chr16:27010809-27010381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 34

               
               
               Conread position:429-832
               
               
               Cow position:chr16:42118371-42117959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 147

               
               
               Conread position:432-824
               
               
               Cow position:chr16:7009653-7009268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:269
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):18, 13

               
               
               Conread position:433-834
               
               
               Cow position:chr16:3011462-3011041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 285

               
               
               Conread position:434-834
               
               
               Cow position:chr16:34532917-34532496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 253

               
               
               Conread position:440-834
               
               
               Cow position:chr16:42080001-42080406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 13

               
               
               Conread position:464-834
               
               
               Cow position:chr16:48495543-48495934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 105

               
               
               Conread position:477-815
               
               
               Cow position:chr16:11640493-11640149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):10, 38

               
               
               Conread position:490-729
               
               
               Cow position:chr16:7022464-7022207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:491-824
               
               
               Cow position:chr16:19887583-19887239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:251
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:491-834
               
               
               Cow position:chr16:11006622-11006984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 14

               
               
               Conread position:491-834
               
               
               Cow position:chr16:24988153-24988515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr16:26317275-26316913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr16:54479770-54479408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:498-755
               
               
               Cow position:chr16:712917-712641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):27, 221

               
               
               Conread position:498-834
               
               
               Cow position:chr16:13538867-13539222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 221

               
               
               Conread position:505-764
               
               
               Cow position:chr16:49577483-49577232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:505-825
               
               
               Cow position:chr16:25260663-25260336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:505-829
               
               
               Cow position:chr16:35039-34708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:506-825
               
               
               Cow position:chr16:34506239-34505911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:514-807
               
               
               Cow position:chr16:6945789-6945489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:521-803
               
               
               Cow position:chr16:27105878-27105593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:521-823
               
               
               Cow position:chr16:10965723-10966021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):71, 14

               
               
               Conread position:526-777
               
               
               Cow position:chr16:9431552-9431811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):47, 25

               
               
               Conread position:534-824
               
               
               Cow position:chr16:15410553-15410851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):30, 14

               
               
               Conread position:537-820
               
               
               Cow position:chr16:819457-819186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):9, 115

               
               
               Conread position:537-834
               
               
               Cow position:chr16:17111760-17111454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 172

               
               
               Conread position:545-825
               
               
               Cow position:chr16:23562938-23562656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):35, 111

               
               
               Conread position:545-828
               
               
               Cow position:chr16:6620128-6620415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):27, 12

               
               
               Conread position:545-830
               
               
               Cow position:chr16:24146512-24146236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):36, 68

               
               
               Conread position:545-834
               
               
               Cow position:chr16:11745041-11744743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):28, 164

               
               
               Conread position:546-819
               
               
               Cow position:chr16:46528826-46529105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 143

               
               
               Conread position:564-824
               
               
               Cow position:chr16:29685406-29685663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):22, 46

               
               
               Conread position:569-797
               
               
               Cow position:chr16:42805201-42804974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):78, 102

               
               
               Conread position:569-810
               
               
               Cow position:chr16:15549324-15549078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 17

               
               
               Conread position:569-834
               
               
               Cow position:chr16:23364441-23364709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):72, 46

               
               
               Conread position:569-834
               
               
               Cow position:chr16:24621225-24621495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:579-834
               
               
               Cow position:chr16:25168529-25168265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):68, 127

               
               
               Conread position:586-822
               
               
               Cow position:chr16:29049887-29049646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):60, 85

               
               
               Conread position:591-804
               
               
               Cow position:chr16:4846214-4846430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):42, 109

               
               
               Conread position:591-818
               
               
               Cow position:chr16:5488220-5487988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):57, 116

               
               
               Conread position:591-834
               
               
               Cow position:chr16:54432024-54431776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:593-834
               
               
               Cow position:chr16:28066505-28066259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):54, 112

               
               
               Conread position:595-834
               
               
               Cow position:chr16:25453080-25453318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):51, 107

               
               
               Conread position:607-834
               
               
               Cow position:chr16:44662158-44661934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:176
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):40, 61

               
               
               Conread position:611-816
               
               
               Cow position:chr16:54175827-54175618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):35, 92

               
               
               Conread position:644-849
               
               
               Cow position:chr16:42734235-42734444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):32, 5

               
               
               Conread position:645-819
               
               
               Cow position:chr16:5664179-5664006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:645-825
               
               
               Cow position:chr16:46520648-46520833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:650-832
               
               
               Cow position:chr16:7084033-7083853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):111, 11

               
               
               Conread position:666-808
               
               
               Cow position:chr16:25937130-25936990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:666-825
               
               
               Cow position:chr16:28268486-28268642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:667-819
               
               
               Cow position:chr16:16238452-16238603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:667-825
               
               
               Cow position:chr16:42742168-42742325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):153, 29

               
               
               Conread position:671-801
               
               
               Cow position:chr16:48482437-48482564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:675-833
               
               
               Cow position:chr16:23790458-23790302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:676-788
               
               
               Cow position:chr16:48502293-48502404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:678-834
               
               
               Cow position:chr16:23096807-23096962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:678-834
               
               
               Cow position:chr16:23098698-23098543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:696-815
               
               
               Cow position:chr16:6266619-6266738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:696-834
               
               
               Cow position:chr16:46224243-46224380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:697-834
               
               
               Cow position:chr16:5591642-5591500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr16:36241473-36241337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr16:41161120-41161256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:704-834
               
               
               Cow position:chr16:56861642-56861512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:706-834
               
               
               Cow position:chr16:1565346-1565474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:707-822
               
               
               Cow position:chr16:1434526-1434411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:712-834
               
               
               Cow position:chr16:20968475-20968597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-410
               
               
               Cow position:chr17:997501-997964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:322
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):62, 120

               
               
               Conread position:1-768
               
               
               Cow position:chr17:9753435-9752617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:829
               
               
               Alignm identity:521
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):20, 24

               
               
               Conread position:73-286
               
               
               Cow position:chr17:8644484-8644271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 36

               
               
               Conread position:73-293
               
               
               Cow position:chr17:18884783-18885030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:73-304
               
               
               Cow position:chr17:20233778-20233533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-382
               
               
               Cow position:chr17:16699884-16700232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-387
               
               
               Cow position:chr17:41014753-41014399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-398
               
               
               Cow position:chr17:10445746-10445394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:73-402
               
               
               Cow position:chr17:2034085-2033712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:257
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):76, 31

               
               
               Conread position:73-410
               
               
               Cow position:chr17:3197043-3197418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:73-429
               
               
               Cow position:chr17:11386047-11385654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):67, 35

               
               
               Conread position:73-453
               
               
               Cow position:chr17:31986608-31987036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-469
               
               
               Cow position:chr17:23884225-23884648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:292
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):69, 31

               
               
               Conread position:73-580
               
               
               Cow position:chr17:29472023-29471464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-721
               
               
               Cow position:chr17:29079916-29079256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 28

               
               
               Conread position:73-819
               
               
               Cow position:chr17:22563732-22562923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:814
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 28

               
               
               Conread position:73-824
               
               
               Cow position:chr17:20084239-20085040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:811
               
               
               Alignm identity:545
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:73-825
               
               
               Cow position:chr17:4480290-4481111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:826
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-825
               
               
               Cow position:chr17:6072120-6071306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:819
               
               
               Alignm identity:547
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-825
               
               
               Cow position:chr17:15374963-15374183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:793
               
               
               Alignm identity:527
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 60

               
               
               Conread position:73-834
               
               
               Cow position:chr17:453418-452616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:810
               
               
               Alignm identity:541
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr17:16117888-16118684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:817
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:73-834
               
               
               Cow position:chr17:20091053-20091842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 45

               
               
               Conread position:73-834
               
               
               Cow position:chr17:22773865-22774679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:834
               
               
               Alignm identity:556
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 27

               
               
               Conread position:73-834
               
               
               Cow position:chr17:27791202-27792011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:818
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:75-645
               
               
               Cow position:chr17:36790649-36790027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 37

               
               
               Conread position:75-808
               
               
               Cow position:chr17:13935577-13936344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:493
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):65, 34

               
               
               Conread position:93-825
               
               
               Cow position:chr17:21767463-21766668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:802
               
               
               Alignm identity:539
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 18

               
               
               Conread position:122-398
               
               
               Cow position:chr17:19998621-19998323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 119

               
               
               Conread position:122-834
               
               
               Cow position:chr17:33792608-33791869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:760
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 344

               
               
               Conread position:128-410
               
               
               Cow position:chr17:24293629-24293325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):76, 69

               
               
               Conread position:133-825
               
               
               Cow position:chr17:730979-731716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 310

               
               
               Conread position:138-522
               
               
               Cow position:chr17:2201806-2201390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:290
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):84, 6

               
               
               Conread position:139-808
               
               
               Cow position:chr17:3549760-3550461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:445
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):84, 17

               
               
               Conread position:140-579
               
               
               Cow position:chr17:50602-51073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:321
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):8, 83

               
               
               Conread position:142-695
               
               
               Cow position:chr17:20078173-20078754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:142-764
               
               
               Cow position:chr17:17221803-17221149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:142-834
               
               
               Cow position:chr17:2177479-2176745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 171

               
               
               Conread position:142-834
               
               
               Cow position:chr17:4063834-4063103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 14

               
               
               Conread position:143-337
               
               
               Cow position:chr17:11382297-11382505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-387
               
               
               Cow position:chr17:28539495-28539247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:143-393
               
               
               Cow position:chr17:923126-922857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-395
               
               
               Cow position:chr17:34564851-34564581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr17:25834922-25834581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-457
               
               
               Cow position:chr17:18339972-18340316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-519
               
               
               Cow position:chr17:15559077-15558667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-519
               
               
               Cow position:chr17:16505241-16505651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-520
               
               
               Cow position:chr17:29083669-29083272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:282
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-526
               
               
               Cow position:chr17:8450215-8449801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:143-551
               
               
               Cow position:chr17:36284772-36284327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:303
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-551
               
               
               Cow position:chr17:39823689-39824134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:304
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-561
               
               
               Cow position:chr17:11913246-11913698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:143-635
               
               
               Cow position:chr17:36265776-36266292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:345
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-645
               
               
               Cow position:chr17:18777331-18777874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-686
               
               
               Cow position:chr17:3306090-3305483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-714
               
               
               Cow position:chr17:5638387-5639007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-714
               
               
               Cow position:chr17:5672015-5672635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-719
               
               
               Cow position:chr17:5805984-5806612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-767
               
               
               Cow position:chr17:34235746-34236422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-768
               
               
               Cow position:chr17:6612527-6611849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:143-819
               
               
               Cow position:chr17:15809493-15808764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-824
               
               
               Cow position:chr17:1784065-1784770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:474
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):62, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr17:1970656-1969922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-833
               
               
               Cow position:chr17:29156886-29156146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr17:2244568-2245294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr17:19214905-19215632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr17:20391279-20390536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr17:40811221-40810512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 13

               
               
               Conread position:144-571
               
               
               Cow position:chr17:40282504-40282048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:306
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):81, 12

               
               
               Conread position:144-645
               
               
               Cow position:chr17:37415412-37415932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-815
               
               
               Cow position:chr17:30413457-30412752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:454
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):62, 9

               
               
               Conread position:145-708
               
               
               Cow position:chr17:18201226-18200626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:407
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-772
               
               
               Cow position:chr17:29213126-29212456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-831
               
               
               Cow position:chr17:2079131-2078422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:146-834
               
               
               Cow position:chr17:4211436-4210691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:532
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 574

               
               
               Conread position:147-382
               
               
               Cow position:chr17:28024388-28024640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-404
               
               
               Cow position:chr17:5899072-5899338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):72, 139

               
               
               Conread position:147-408
               
               
               Cow position:chr17:24618280-24617998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):12, 134

               
               
               Conread position:147-410
               
               
               Cow position:chr17:15228326-15228617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-410
               
               
               Cow position:chr17:25567701-25567411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-457
               
               
               Cow position:chr17:13725765-13725424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):14, 182

               
               
               Conread position:147-644
               
               
               Cow position:chr17:16904082-16903542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 355

               
               
               Conread position:147-693
               
               
               Cow position:chr17:16446979-16447576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 34

               
               
               Conread position:147-760
               
               
               Cow position:chr17:20033887-20033275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 64

               
               
               Conread position:147-834
               
               
               Cow position:chr17:8223209-8222457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 574

               
               
               Conread position:147-834
               
               
               Cow position:chr17:14243335-14242596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 248

               
               
               Conread position:147-834
               
               
               Cow position:chr17:20093661-20094394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 273

               
               
               Conread position:147-834
               
               
               Cow position:chr17:20215583-20214864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 406

               
               
               Conread position:147-834
               
               
               Cow position:chr17:24026483-24027221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:525
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 70

               
               
               Conread position:147-834
               
               
               Cow position:chr17:25739799-25739066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 529

               
               
               Conread position:148-377
               
               
               Cow position:chr17:39485008-39484760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):75, 177

               
               
               Conread position:148-474
               
               
               Cow position:chr17:18814649-18814298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:148-579
               
               
               Cow position:chr17:36817368-36816913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:305
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):11, 165

               
               
               Conread position:148-825
               
               
               Cow position:chr17:6263356-6262628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 332

               
               
               Conread position:148-834
               
               
               Cow position:chr17:15328782-15328043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 130

               
               
               Conread position:150-336
               
               
               Cow position:chr17:4123302-4123503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):71, 8

               
               
               Conread position:150-518
               
               
               Cow position:chr17:15334958-15335342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 8

               
               
               Conread position:151-846
               
               
               Cow position:chr17:932877-932150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:465
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):68, 47

               
               
               Conread position:153-453
               
               
               Cow position:chr17:979691-980021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):6, 46

               
               
               Conread position:156-724
               
               
               Cow position:chr17:14006901-14006299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:399
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:156-834
               
               
               Cow position:chr17:16854615-16855331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 370

               
               
               Conread position:157-464
               
               
               Cow position:chr17:21184834-21185144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):129, 66

               
               
               Conread position:157-834
               
               
               Cow position:chr17:18591892-18591193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 29

               
               
               Conread position:158-337
               
               
               Cow position:chr17:38617129-38616932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr17:2081441-2081199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr17:21181978-21181732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr17:31671409-31671655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr17:3652236-3652563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr17:15093971-15094298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-527
               
               
               Cow position:chr17:36747031-36747434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):64, 284

               
               
               Conread position:158-540
               
               
               Cow position:chr17:38992243-38991824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:282
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-544
               
               
               Cow position:chr17:21716953-21716529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:290
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-634
               
               
               Cow position:chr17:254584-254086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 174

               
               
               Conread position:158-635
               
               
               Cow position:chr17:6956130-6955614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:344
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):65, 424

               
               
               Conread position:158-645
               
               
               Cow position:chr17:8212545-8212017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:357
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:158-645
               
               
               Cow position:chr17:20226092-20225558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:357
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-662
               
               
               Cow position:chr17:14212529-14213080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:158-721
               
               
               Cow position:chr17:17958087-17957482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 470

               
               
               Conread position:158-782
               
               
               Cow position:chr17:26829253-26829925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 588

               
               
               Conread position:158-785
               
               
               Cow position:chr17:43471100-43471776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 588

               
               
               Conread position:158-821
               
               
               Cow position:chr17:158768-158059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 120

               
               
               Conread position:158-825
               
               
               Cow position:chr17:2265679-2264964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 453

               
               
               Conread position:158-825
               
               
               Cow position:chr17:6123274-6122554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 589

               
               
               Conread position:158-825
               
               
               Cow position:chr17:15118307-15117588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-833
               
               
               Cow position:chr17:2839503-2838796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 114

               
               
               Conread position:158-834
               
               
               Cow position:chr17:148399-147683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 233

               
               
               Conread position:158-834
               
               
               Cow position:chr17:15439282-15438566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:158-834
               
               
               Cow position:chr17:20546628-20545900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr17:22248761-22249489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 588

               
               
               Conread position:158-834
               
               
               Cow position:chr17:23320929-23321660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 276

               
               
               Conread position:158-834
               
               
               Cow position:chr17:24785681-24784958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr17:29824469-29825199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 596

               
               
               Conread position:158-834
               
               
               Cow position:chr17:43991975-43991253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 228

               
               
               Conread position:159-832
               
               
               Cow position:chr17:6081978-6081275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 315

               
               
               Conread position:159-834
               
               
               Cow position:chr17:184637-183909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 594

               
               
               Conread position:160-411
               
               
               Cow position:chr17:5748371-5748630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):60, 21

               
               
               Conread position:160-517
               
               
               Cow position:chr17:15701220-15701598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):62, 29

               
               
               Conread position:160-525
               
               
               Cow position:chr17:7615202-7615597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):59, 377

               
               
               Conread position:160-528
               
               
               Cow position:chr17:3315569-3315173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):71, 41

               
               
               Conread position:160-528
               
               
               Cow position:chr17:13674017-13674396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:255
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):44, 133

               
               
               Conread position:160-580
               
               
               Cow position:chr17:21666488-21666029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:314
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):63, 340

               
               
               Conread position:160-714
               
               
               Cow position:chr17:23337571-23338169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 65

               
               
               Conread position:160-777
               
               
               Cow position:chr17:11083650-11084305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 527

               
               
               Conread position:160-801
               
               
               Cow position:chr17:31310794-31311433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:429
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):221, 62

               
               
               Conread position:160-806
               
               
               Cow position:chr17:2179317-2178658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 81

               
               
               Conread position:160-806
               
               
               Cow position:chr17:3328587-3327922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:422
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):70, 163

               
               
               Conread position:160-822
               
               
               Cow position:chr17:10843762-10843043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 482

               
               
               Conread position:160-823
               
               
               Cow position:chr17:27978591-27977894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 402

               
               
               Conread position:160-825
               
               
               Cow position:chr17:10285404-10286086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:424
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):64, 200

               
               
               Conread position:160-828
               
               
               Cow position:chr17:20695667-20694969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:434
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):44, 270

               
               
               Conread position:160-831
               
               
               Cow position:chr17:144729-145407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 15

               
               
               Conread position:160-834
               
               
               Cow position:chr17:241775-241052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 117

               
               
               Conread position:160-834
               
               
               Cow position:chr17:18099588-18100313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 32

               
               
               Conread position:160-834
               
               
               Cow position:chr17:19405820-19406535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:454
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):62, 431

               
               
               Conread position:161-768
               
               
               Cow position:chr17:20209387-20210055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 321

               
               
               Conread position:161-825
               
               
               Cow position:chr17:15722076-15721376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:451
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):60, 578

               
               
               Conread position:161-832
               
               
               Cow position:chr17:19235244-19234549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:456
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):61, 40

               
               
               Conread position:161-882
               
               
               Cow position:chr17:1568734-1569504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 126

               
               
               Conread position:162-834
               
               
               Cow position:chr17:15854220-15853492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 105

               
               
               Conread position:164-834
               
               
               Cow position:chr17:1654274-1654999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 31

               
               
               Conread position:164-834
               
               
               Cow position:chr17:23723092-23722383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 119

               
               
               Conread position:169-834
               
               
               Cow position:chr17:1708278-1708967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 18

               
               
               Conread position:170-831
               
               
               Cow position:chr17:8205413-8204701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 115

               
               
               Conread position:171-801
               
               
               Cow position:chr17:14249629-14250322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 94

               
               
               Conread position:175-635
               
               
               Cow position:chr17:13910145-13910645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:335
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:186-788
               
               
               Cow position:chr17:37528509-37529164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 567

               
               
               Conread position:189-410
               
               
               Cow position:chr17:20272106-20272351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:189-825
               
               
               Cow position:chr17:14028887-14029574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 564

               
               
               Conread position:189-834
               
               
               Cow position:chr17:1456920-1457619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 560

               
               
               Conread position:207-645
               
               
               Cow position:chr17:13921660-13921202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:311
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:208-644
               
               
               Cow position:chr17:4635357-4635818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:313
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):28, 181

               
               
               Conread position:208-825
               
               
               Cow position:chr17:38829311-38828692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 13

               
               
               Conread position:221-548
               
               
               Cow position:chr17:3781070-3780719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:221-548
               
               
               Cow position:chr17:29041485-29041836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):19, 302

               
               
               Conread position:221-741
               
               
               Cow position:chr17:19369861-19369300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 310

               
               
               Conread position:221-825
               
               
               Cow position:chr17:21771100-21770451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 143

               
               
               Conread position:221-829
               
               
               Cow position:chr17:1883663-1883029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:412
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):17, 209

               
               
               Conread position:222-829
               
               
               Cow position:chr17:17128423-17127762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 271

               
               
               Conread position:227-729
               
               
               Cow position:chr17:38629537-38629041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 170

               
               
               Conread position:236-745
               
               
               Cow position:chr17:18242368-18241849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:345
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):101, 29

               
               
               Conread position:243-825
               
               
               Cow position:chr17:30182185-30182809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 499

               
               
               Conread position:245-548
               
               
               Cow position:chr17:18324024-18324338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 152

               
               
               Conread position:245-834
               
               
               Cow position:chr17:17133718-17133107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:393
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):42, 15

               
               
               Conread position:260-452
               
               
               Cow position:chr17:42313255-42313049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:263-720
               
               
               Cow position:chr17:18198722-18198230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:318
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):78, 369

               
               
               Conread position:267-834
               
               
               Cow position:chr17:4085427-4084830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 459

               
               
               Conread position:270-834
               
               
               Cow position:chr17:33289617-33290198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 65

               
               
               Conread position:277-476
               
               
               Cow position:chr17:40802101-40801893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):59, 147

               
               
               Conread position:281-803
               
               
               Cow position:chr17:29229203-29228675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:331
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):106, 60

               
               
               Conread position:287-834
               
               
               Cow position:chr17:138946-138375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 127

               
               
               Conread position:289-702
               
               
               Cow position:chr17:21304631-21304189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 408

               
               
               Conread position:290-616
               
               
               Cow position:chr17:2583728-2583377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):49, 188

               
               
               Conread position:290-635
               
               
               Cow position:chr17:31233011-31232645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):49, 181

               
               
               Conread position:290-811
               
               
               Cow position:chr17:11619536-11618987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:354
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):48, 74

               
               
               Conread position:290-834
               
               
               Cow position:chr17:1311422-1312000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 442

               
               
               Conread position:292-834
               
               
               Cow position:chr17:15708654-15709231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 443

               
               
               Conread position:292-834
               
               
               Cow position:chr17:29950551-29949980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 225

               
               
               Conread position:296-581
               
               
               Cow position:chr17:29897970-29897667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):93, 220

               
               
               Conread position:315-834
               
               
               Cow position:chr17:5043276-5043826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 131

               
               
               Conread position:316-815
               
               
               Cow position:chr17:32407369-32407867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:334
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 203

               
               
               Conread position:319-693
               
               
               Cow position:chr17:15351348-15350951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):19, 45

               
               
               Conread position:330-694
               
               
               Cow position:chr17:3237709-3237329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):10, 239

               
               
               Conread position:341-818
               
               
               Cow position:chr17:10270073-10270569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 76

               
               
               Conread position:345-834
               
               
               Cow position:chr17:15140057-15140576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 385

               
               
               Conread position:348-834
               
               
               Cow position:chr17:20642988-20642476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 17

               
               
               Conread position:349-834
               
               
               Cow position:chr17:15307139-15307614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 63

               
               
               Conread position:354-644
               
               
               Cow position:chr17:14232431-14232747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:421-709
               
               
               Cow position:chr17:14865187-14865497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 295

               
               
               Conread position:421-765
               
               
               Cow position:chr17:30623-30264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):7, 294

               
               
               Conread position:421-803
               
               
               Cow position:chr17:15228843-15229238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 56

               
               
               Conread position:422-834
               
               
               Cow position:chr17:21066476-21066905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 82

               
               
               Conread position:423-834
               
               
               Cow position:chr17:2033382-2032966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 277

               
               
               Conread position:426-809
               
               
               Cow position:chr17:11025095-11024688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):62, 302

               
               
               Conread position:434-824
               
               
               Cow position:chr17:24292817-24292408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 81

               
               
               Conread position:435-834
               
               
               Cow position:chr17:33934658-33935075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 276

               
               
               Conread position:439-834
               
               
               Cow position:chr17:20089492-20089890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:283
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 71

               
               
               Conread position:457-833
               
               
               Cow position:chr17:34567946-34567564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 183

               
               
               Conread position:490-754
               
               
               Cow position:chr17:11381437-11381158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:491-822
               
               
               Cow position:chr17:15325112-15325461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 224

               
               
               Conread position:491-822
               
               
               Cow position:chr17:44641346-44641696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr17:13931019-13930659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:505-834
               
               
               Cow position:chr17:1711798-1712135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:506-834
               
               
               Cow position:chr17:14240167-14239831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:513-834
               
               
               Cow position:chr17:17070003-17069682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 68

               
               
               Conread position:514-834
               
               
               Cow position:chr17:22106546-22106873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:515-825
               
               
               Cow position:chr17:602824-603147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):9, 37

               
               
               Conread position:516-825
               
               
               Cow position:chr17:38916942-38917257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 12

               
               
               Conread position:522-825
               
               
               Cow position:chr17:14899803-14899494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):51, 12

               
               
               Conread position:523-825
               
               
               Cow position:chr17:18721797-18722107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):50, 25

               
               
               Conread position:528-766
               
               
               Cow position:chr17:2269889-2269638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):22, 183

               
               
               Conread position:529-825
               
               
               Cow position:chr17:13674440-13674740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):6, 25

               
               
               Conread position:530-834
               
               
               Cow position:chr17:11785958-11785646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:544-829
               
               
               Cow position:chr17:1565235-1564951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 13

               
               
               Conread position:569-834
               
               
               Cow position:chr17:3780488-3780213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):78, 132

               
               
               Conread position:569-834
               
               
               Cow position:chr17:8994600-8994330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:570-834
               
               
               Cow position:chr17:9074181-9073912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):77, 135

               
               
               Conread position:570-834
               
               
               Cow position:chr17:15719374-15719105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):77, 135

               
               
               Conread position:573-834
               
               
               Cow position:chr17:3401697-3401434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):73, 27

               
               
               Conread position:590-834
               
               
               Cow position:chr17:23510451-23510689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):160, 7

               
               
               Conread position:591-806
               
               
               Cow position:chr17:1706430-1706209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):61, 112

               
               
               Conread position:593-834
               
               
               Cow position:chr17:18123927-18124169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):44, 112

               
               
               Conread position:594-807
               
               
               Cow position:chr17:29821140-29820924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):54, 14

               
               
               Conread position:600-863
               
               
               Cow position:chr17:9905494-9905760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):46, 84

               
               
               Conread position:602-815
               
               
               Cow position:chr17:17383084-17382865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:609-831
               
               
               Cow position:chr17:36816651-36816431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):39, 75

               
               
               Conread position:621-834
               
               
               Cow position:chr17:2583265-2583047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):25, 50

               
               
               Conread position:625-831
               
               
               Cow position:chr17:41012505-41012298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):22, 77

               
               
               Conread position:635-834
               
               
               Cow position:chr17:13920506-13920704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):32, 22

               
               
               Conread position:645-834
               
               
               Cow position:chr17:5546429-5546617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:652-834
               
               
               Cow position:chr17:253768-253590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr17:9745882-9745717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr17:26829979-26830142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:667-834
               
               
               Cow position:chr17:14214104-14214267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:667-834
               
               
               Cow position:chr17:17087668-17087832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:669-793
               
               
               Cow position:chr17:51145-51267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:698-829
               
               
               Cow position:chr17:8211560-8211430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr17:12674548-12674684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:702-834
               
               
               Cow position:chr17:28025176-28025310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:707-834
               
               
               Cow position:chr17:3305266-3305141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:709-830
               
               
               Cow position:chr17:4570135-4570015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1-580
               
               
               Cow position:chr18:41837200-41837842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 108

               
               
               Conread position:1-834
               
               
               Cow position:chr18:11870355-11869472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:889
               
               
               Alignm identity:555
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 91

               
               
               Conread position:11-603
               
               
               Cow position:chr18:4978012-4978636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:410
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):5, 13

               
               
               Conread position:68-410
               
               
               Cow position:chr18:7964374-7963994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):63, 39

               
               
               Conread position:69-480
               
               
               Cow position:chr18:29059007-29059460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:314
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):80, 42

               
               
               Conread position:73-292
               
               
               Cow position:chr18:34662709-34662469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-381
               
               
               Cow position:chr18:51679411-51679739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):89, 34

               
               
               Conread position:73-402
               
               
               Cow position:chr18:6878158-6878527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:73-410
               
               
               Cow position:chr18:27833611-27833991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-452
               
               
               Cow position:chr18:26306081-26305661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:280
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:73-478
               
               
               Cow position:chr18:7359230-7358782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:300
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:73-480
               
               
               Cow position:chr18:32121868-32122320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:316
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:73-503
               
               
               Cow position:chr18:5076367-5076831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:329
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):55, 31

               
               
               Conread position:73-683
               
               
               Cow position:chr18:16227036-16226370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:439
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):66, 35

               
               
               Conread position:73-704
               
               
               Cow position:chr18:23659090-23659780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 38

               
               
               Conread position:73-710
               
               
               Cow position:chr18:89940-89280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:442
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):62, 34

               
               
               Conread position:73-714
               
               
               Cow position:chr18:15688797-15688139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:436
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:73-782
               
               
               Cow position:chr18:54065264-54066026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 35

               
               
               Conread position:73-796
               
               
               Cow position:chr18:14127473-14128260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:794
               
               
               Alignm identity:537
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:73-814
               
               
               Cow position:chr18:33272421-33271643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:536
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:73-831
               
               
               Cow position:chr18:10890516-10889766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:786
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:73-832
               
               
               Cow position:chr18:16471403-16472184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:553
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 28

               
               
               Conread position:73-834
               
               
               Cow position:chr18:24620229-24619414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:820
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr18:40484813-40483981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:837
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 39

               
               
               Conread position:73-834
               
               
               Cow position:chr18:50092632-50093458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:831
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr18:52629442-52630272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:835
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:74-410
               
               
               Cow position:chr18:4369546-4369912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):75, 30

               
               
               Conread position:74-480
               
               
               Cow position:chr18:39002329-39002764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:301
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):62, 33

               
               
               Conread position:74-819
               
               
               Cow position:chr18:19310963-19310167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:809
               
               
               Alignm identity:555
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 33

               
               
               Conread position:74-825
               
               
               Cow position:chr18:35057815-35057020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:809
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 27

               
               
               Conread position:75-772
               
               
               Cow position:chr18:1144746-1145495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:80-531
               
               
               Cow position:chr18:27457293-27457762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:313
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):65, 27

               
               
               Conread position:95-882
               
               
               Cow position:chr18:17670194-17671021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:835
               
               
               Alignm identity:558
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 53

               
               
               Conread position:142-353
               
               
               Cow position:chr18:35637542-35637317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):9, 18

               
               
               Conread position:142-442
               
               
               Cow position:chr18:36224163-36223837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:142-834
               
               
               Cow position:chr18:52656525-52655792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 426

               
               
               Conread position:143-295
               
               
               Cow position:chr18:42966219-42966057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):64, 13

               
               
               Conread position:143-354
               
               
               Cow position:chr18:2609336-2609557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr18:27995407-27995147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr18:33616694-33616954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr18:50114559-50114814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-402
               
               
               Cow position:chr18:9365271-9364993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-445
               
               
               Cow position:chr18:36134910-36135243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-452
               
               
               Cow position:chr18:7649378-7649041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:143-453
               
               
               Cow position:chr18:42629092-42628751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-470
               
               
               Cow position:chr18:33158249-33157906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):8, 20

               
               
               Conread position:143-516
               
               
               Cow position:chr18:55436406-55436812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-522
               
               
               Cow position:chr18:7050313-7049901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:278
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):79, 10

               
               
               Conread position:143-540
               
               
               Cow position:chr18:45979093-45978676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):155, 13

               
               
               Conread position:143-571
               
               
               Cow position:chr18:30844178-30844642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:321
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-580
               
               
               Cow position:chr18:16857513-16857036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:320
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-596
               
               
               Cow position:chr18:36770816-36771300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 10

               
               
               Conread position:143-644
               
               
               Cow position:chr18:16094608-16094065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-645
               
               
               Cow position:chr18:10292456-10291910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:372
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-645
               
               
               Cow position:chr18:16462926-16463467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-703
               
               
               Cow position:chr18:30607424-30606812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-750
               
               
               Cow position:chr18:2853060-2853721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-818
               
               
               Cow position:chr18:25355243-25354519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr18:6733242-6733968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr18:10896899-10896194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-825
               
               
               Cow position:chr18:51601939-51602671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr18:6103691-6104420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:537
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr18:23802748-23802009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr18:28927879-28928604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr18:29862880-29863619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr18:36208660-36209389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:468
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):9, 18

               
               
               Conread position:143-834
               
               
               Cow position:chr18:37733417-37732675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:144-540
               
               
               Cow position:chr18:37692558-37692993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):81, 12

               
               
               Conread position:144-603
               
               
               Cow position:chr18:32280676-32280196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:312
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):131, 12

               
               
               Conread position:144-644
               
               
               Cow position:chr18:48548542-48548019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:354
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):77, 12

               
               
               Conread position:144-721
               
               
               Cow position:chr18:23682188-23682793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:387
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:144-808
               
               
               Cow position:chr18:24453513-24452822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:144-823
               
               
               Cow position:chr18:30876550-30877267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 17

               
               
               Conread position:144-834
               
               
               Cow position:chr18:19356234-19355500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:145-366
               
               
               Cow position:chr18:30248738-30248978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):76, 8

               
               
               Conread position:145-452
               
               
               Cow position:chr18:32210089-32210424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-459
               
               
               Cow position:chr18:11271277-11271617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-467
               
               
               Cow position:chr18:3149008-3149365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:255
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-592
               
               
               Cow position:chr18:33407017-33406540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 7

               
               
               Conread position:145-820
               
               
               Cow position:chr18:35443651-35444369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 14

               
               
               Conread position:145-830
               
               
               Cow position:chr18:13508358-13509060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:528
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 36

               
               
               Conread position:145-832
               
               
               Cow position:chr18:16390503-16391224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-834
               
               
               Cow position:chr18:5536696-5535959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-834
               
               
               Cow position:chr18:12241538-12240826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:146-825
               
               
               Cow position:chr18:54033422-54032712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 65

               
               
               Conread position:146-834
               
               
               Cow position:chr18:14419704-14418963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 455

               
               
               Conread position:147-382
               
               
               Cow position:chr18:27800157-27800413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:147-410
               
               
               Cow position:chr18:10516567-10516305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):12, 79

               
               
               Conread position:147-410
               
               
               Cow position:chr18:29585886-29586177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-480
               
               
               Cow position:chr18:39494495-39494150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 94

               
               
               Conread position:147-509
               
               
               Cow position:chr18:35012926-35013319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):12, 18

               
               
               Conread position:147-518
               
               
               Cow position:chr18:20151316-20150929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 148

               
               
               Conread position:147-528
               
               
               Cow position:chr18:43464044-43464463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:292
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-808
               
               
               Cow position:chr18:36512353-36511645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 602

               
               
               Conread position:147-818
               
               
               Cow position:chr18:37509684-37508970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 57

               
               
               Conread position:147-825
               
               
               Cow position:chr18:27990483-27989751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 611

               
               
               Conread position:147-831
               
               
               Cow position:chr18:29797358-29798097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:525
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 606

               
               
               Conread position:147-834
               
               
               Cow position:chr18:25924095-25923371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 128

               
               
               Conread position:147-834
               
               
               Cow position:chr18:28968563-28969300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 592

               
               
               Conread position:147-834
               
               
               Cow position:chr18:51485313-51484576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 349

               
               
               Conread position:148-466
               
               
               Cow position:chr18:27194228-27193883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):11, 288

               
               
               Conread position:148-626
               
               
               Cow position:chr18:44261779-44261267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 42

               
               
               Conread position:148-815
               
               
               Cow position:chr18:36122133-36122832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 415

               
               
               Conread position:148-834
               
               
               Cow position:chr18:16172892-16173627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 40

               
               
               Conread position:150-382
               
               
               Cow position:chr18:36336338-36336589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):72, 9

               
               
               Conread position:150-446
               
               
               Cow position:chr18:38341820-38342135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):72, 281

               
               
               Conread position:150-471
               
               
               Cow position:chr18:55001392-55001744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 8

               
               
               Conread position:150-513
               
               
               Cow position:chr18:55699799-55700194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:270
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):75, 8

               
               
               Conread position:150-765
               
               
               Cow position:chr18:30231850-30232484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:417
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):72, 10

               
               
               Conread position:151-829
               
               
               Cow position:chr18:17944238-17943535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 514

               
               
               Conread position:154-824
               
               
               Cow position:chr18:41238245-41237527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 296

               
               
               Conread position:157-453
               
               
               Cow position:chr18:15911832-15911505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):65, 183

               
               
               Conread position:157-834
               
               
               Cow position:chr18:602750-603479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-356
               
               
               Cow position:chr18:30716671-30716888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr18:17742211-17741965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr18:42425287-42425045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr18:55022514-55022268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-398
               
               
               Cow position:chr18:699321-699580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):64, 39

               
               
               Conread position:158-453
               
               
               Cow position:chr18:16641162-16640835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr18:51346002-51345675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr18:51580071-51580398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-458
               
               
               Cow position:chr18:40059390-40059073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):64, 275

               
               
               Conread position:158-521
               
               
               Cow position:chr18:42608962-42609359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:272
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:158-528
               
               
               Cow position:chr18:42242627-42243034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:278
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:158-537
               
               
               Cow position:chr18:48300755-48301165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:158-580
               
               
               Cow position:chr18:19461994-19461528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:313
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr18:29079451-29078985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:313
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr18:31139463-31139000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:312
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr18:43473300-43472846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:158-611
               
               
               Cow position:chr18:3190458-3189977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:326
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):64, 396

               
               
               Conread position:158-615
               
               
               Cow position:chr18:16045629-16046117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:321
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):64, 109

               
               
               Conread position:158-692
               
               
               Cow position:chr18:18215308-18215890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:158-692
               
               
               Cow position:chr18:26242746-26243332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 33

               
               
               Conread position:158-692
               
               
               Cow position:chr18:54047593-54046997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 569

               
               
               Conread position:158-712
               
               
               Cow position:chr18:42080306-42080917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 396

               
               
               Conread position:158-767
               
               
               Cow position:chr18:13270616-13269962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 587

               
               
               Conread position:158-778
               
               
               Cow position:chr18:40195825-40195155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 587

               
               
               Conread position:158-819
               
               
               Cow position:chr18:29072131-29071422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 590

               
               
               Conread position:158-833
               
               
               Cow position:chr18:33607946-33607230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 308

               
               
               Conread position:158-834
               
               
               Cow position:chr18:11779033-11778327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 110

               
               
               Conread position:158-834
               
               
               Cow position:chr18:15172545-15171859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 86

               
               
               Conread position:158-834
               
               
               Cow position:chr18:24037137-24037858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 587

               
               
               Conread position:158-834
               
               
               Cow position:chr18:28929740-28930418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 40

               
               
               Conread position:158-834
               
               
               Cow position:chr18:51459131-51459856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 253

               
               
               Conread position:158-834
               
               
               Cow position:chr18:51698353-51697631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 349

               
               
               Conread position:158-834
               
               
               Cow position:chr18:52574817-52574101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 346

               
               
               Conread position:158-834
               
               
               Cow position:chr18:55554965-55554236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:159-472
               
               
               Cow position:chr18:31996646-31996303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):60, 174

               
               
               Conread position:159-516
               
               
               Cow position:chr18:36133464-36133106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:260
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):66, 195

               
               
               Conread position:159-616
               
               
               Cow position:chr18:53872588-53872101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:159-834
               
               
               Cow position:chr18:27540135-27539418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 198

               
               
               Conread position:160-387
               
               
               Cow position:chr18:16437798-16437556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-452
               
               
               Cow position:chr18:7950475-7950174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):52, 75

               
               
               Conread position:160-452
               
               
               Cow position:chr18:23473138-23473453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):59, 80

               
               
               Conread position:160-540
               
               
               Cow position:chr18:45981204-45980796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:273
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):55, 81

               
               
               Conread position:160-635
               
               
               Cow position:chr18:12269867-12269344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 115

               
               
               Conread position:160-644
               
               
               Cow position:chr18:225723-226235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:327
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):52, 188

               
               
               Conread position:160-644
               
               
               Cow position:chr18:43430710-43430187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 81

               
               
               Conread position:160-695
               
               
               Cow position:chr18:40693939-40693360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:375
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):63, 121

               
               
               Conread position:160-748
               
               
               Cow position:chr18:26845781-26845177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:399
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):62, 87

               
               
               Conread position:160-794
               
               
               Cow position:chr18:30846355-30847023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:424
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):64, 180

               
               
               Conread position:160-823
               
               
               Cow position:chr18:5570233-5569541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 48

               
               
               Conread position:160-825
               
               
               Cow position:chr18:17335032-17335735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 38

               
               
               Conread position:160-825
               
               
               Cow position:chr18:40342135-40342837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 274

               
               
               Conread position:160-834
               
               
               Cow position:chr18:38157834-38158556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 103

               
               
               Conread position:160-834
               
               
               Cow position:chr18:47745465-47744737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 559

               
               
               Conread position:161-606
               
               
               Cow position:chr18:1658866-1659337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 366

               
               
               Conread position:161-765
               
               
               Cow position:chr18:43129780-43129146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:414
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):65, 37

               
               
               Conread position:161-802
               
               
               Cow position:chr18:51272428-51273087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 20

               
               
               Conread position:161-825
               
               
               Cow position:chr18:17324086-17323390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 278

               
               
               Conread position:164-398
               
               
               Cow position:chr18:44229534-44229775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):58, 122

               
               
               Conread position:164-451
               
               
               Cow position:chr18:7946406-7946103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):55, 10

               
               
               Conread position:164-834
               
               
               Cow position:chr18:16134949-16135677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 282

               
               
               Conread position:164-834
               
               
               Cow position:chr18:22790703-22791431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:528
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 42

               
               
               Conread position:165-808
               
               
               Cow position:chr18:41208639-41207952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 153

               
               
               Conread position:166-480
               
               
               Cow position:chr18:14048069-14047726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:167-381
               
               
               Cow position:chr18:51692115-51692352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:167-381
               
               
               Cow position:chr18:51713358-51713594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:169-387
               
               
               Cow position:chr18:21574363-21574124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:169-819
               
               
               Cow position:chr18:10113698-10113011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 129

               
               
               Conread position:169-822
               
               
               Cow position:chr18:36649092-36648400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 290

               
               
               Conread position:171-453
               
               
               Cow position:chr18:21579853-21580167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:180-580
               
               
               Cow position:chr18:51690489-51690045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:296
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:187-819
               
               
               Cow position:chr18:51663845-51663176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 36

               
               
               Conread position:189-782
               
               
               Cow position:chr18:23701120-23701760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 250

               
               
               Conread position:189-804
               
               
               Cow position:chr18:8965975-8965332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:427
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):42, 275

               
               
               Conread position:190-761
               
               
               Cow position:chr18:23688847-23688230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 556

               
               
               Conread position:208-602
               
               
               Cow position:chr18:10221034-10221462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):28, 137

               
               
               Conread position:208-834
               
               
               Cow position:chr18:35296792-35296153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 96

               
               
               Conread position:221-814
               
               
               Cow position:chr18:32245683-32246294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 191

               
               
               Conread position:221-825
               
               
               Cow position:chr18:22413012-22412383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:419
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:230-765
               
               
               Cow position:chr18:15485575-15486124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:355
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):53, 303

               
               
               Conread position:235-472
               
               
               Cow position:chr18:42466725-42466976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):57, 23

               
               
               Conread position:243-825
               
               
               Cow position:chr18:43284700-43285310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 152

               
               
               Conread position:248-822
               
               
               Cow position:chr18:35293724-35293119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 119

               
               
               Conread position:249-834
               
               
               Cow position:chr18:32164326-32164946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 486

               
               
               Conread position:258-548
               
               
               Cow position:chr18:23716061-23716374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):19, 207

               
               
               Conread position:269-522
               
               
               Cow position:chr18:33851114-33850846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):70, 193

               
               
               Conread position:270-480
               
               
               Cow position:chr18:45905291-45905513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 18

               
               
               Conread position:272-709
               
               
               Cow position:chr18:33522798-33522337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:311
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):67, 26

               
               
               Conread position:288-834
               
               
               Cow position:chr18:15858728-15858154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:372
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):29, 160

               
               
               Conread position:289-556
               
               
               Cow position:chr18:16025092-16025381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:290-613
               
               
               Cow position:chr18:30035167-30035499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:249
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):51, 41

               
               
               Conread position:290-829
               
               
               Cow position:chr18:36776840-36776267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 439

               
               
               Conread position:290-832
               
               
               Cow position:chr18:33894095-33893542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:369
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):45, 119

               
               
               Conread position:291-718
               
               
               Cow position:chr18:51654158-51653701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):48, 433

               
               
               Conread position:292-833
               
               
               Cow position:chr18:28084609-28084025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 443

               
               
               Conread position:311-825
               
               
               Cow position:chr18:48529642-48529108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:344
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):75, 53

               
               
               Conread position:311-825
               
               
               Cow position:chr18:56483128-56483684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:374
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):74, 10

               
               
               Conread position:342-834
               
               
               Cow position:chr18:14479589-14479073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:342
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):47, 27

               
               
               Conread position:345-824
               
               
               Cow position:chr18:39812137-39812638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:323
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):41, 167

               
               
               Conread position:347-718
               
               
               Cow position:chr18:36457755-36457360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 21

               
               
               Conread position:349-791
               
               
               Cow position:chr18:29767931-29767463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:312
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):34, 271

               
               
               Conread position:356-834
               
               
               Cow position:chr18:37582964-37583473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 92

               
               
               Conread position:374-612
               
               
               Cow position:chr18:14965756-14965502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):41, 224

               
               
               Conread position:386-746
               
               
               Cow position:chr18:50834926-50835314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):29, 342

               
               
               Conread position:414-573
               
               
               Cow position:chr18:36233659-36233833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:414-834
               
               
               Cow position:chr18:2296675-2297116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 93

               
               
               Conread position:417-834
               
               
               Cow position:chr18:22182115-22182552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 305

               
               
               Conread position:420-828
               
               
               Cow position:chr18:24712563-24712987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 86

               
               
               Conread position:421-834
               
               
               Cow position:chr18:3362481-3362057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 287

               
               
               Conread position:421-834
               
               
               Cow position:chr18:32436681-32437116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 301

               
               
               Conread position:427-735
               
               
               Cow position:chr18:32859610-32859938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):44, 289

               
               
               Conread position:428-804
               
               
               Cow position:chr18:48391330-48390941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):51, 97

               
               
               Conread position:430-833
               
               
               Cow position:chr18:26550166-26549753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 73

               
               
               Conread position:434-796
               
               
               Cow position:chr18:29075297-29074915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 72

               
               
               Conread position:434-831
               
               
               Cow position:chr18:6881849-6882267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 285

               
               
               Conread position:491-794
               
               
               Cow position:chr18:24413642-24413321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):34, 227

               
               
               Conread position:491-834
               
               
               Cow position:chr18:5202836-5202474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr18:9981967-9981605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr18:14047596-14047256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):15, 60

               
               
               Conread position:491-834
               
               
               Cow position:chr18:24212284-24211922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr18:27994637-27994999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:495-761
               
               
               Cow position:chr18:31996262-31995984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):29, 82

               
               
               Conread position:502-825
               
               
               Cow position:chr18:29240423-29240081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 180

               
               
               Conread position:504-756
               
               
               Cow position:chr18:46874124-46874397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):20, 212

               
               
               Conread position:505-788
               
               
               Cow position:chr18:21811302-21811011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:505-795
               
               
               Cow position:chr18:51331167-51330870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:505-834
               
               
               Cow position:chr18:16463544-16463884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:505-834
               
               
               Cow position:chr18:36114125-36114456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:505-834
               
               
               Cow position:chr18:49781957-49782292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 31

               
               
               Conread position:507-825
               
               
               Cow position:chr18:25866868-25867192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):8, 28

               
               
               Conread position:520-807
               
               
               Cow position:chr18:14423572-14423278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):62, 21

               
               
               Conread position:521-834
               
               
               Cow position:chr18:32656876-32656556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:544-834
               
               
               Cow position:chr18:40721334-40721622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):29, 164

               
               
               Conread position:545-777
               
               
               Cow position:chr18:43621442-43621683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):28, 164

               
               
               Conread position:568-825
               
               
               Cow position:chr18:51581454-51581716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 61

               
               
               Conread position:568-834
               
               
               Cow position:chr18:20270841-20270570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):80, 137

               
               
               Conread position:569-786
               
               
               Cow position:chr18:33752972-33752751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):77, 40

               
               
               Conread position:569-825
               
               
               Cow position:chr18:40758151-40758412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 134

               
               
               Conread position:571-849
               
               
               Cow position:chr18:45617042-45616758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):76, 100

               
               
               Conread position:572-782
               
               
               Cow position:chr18:36233931-36234143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):60, 129

               
               
               Conread position:580-822
               
               
               Cow position:chr18:10222274-10222028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):67, 125

               
               
               Conread position:589-834
               
               
               Cow position:chr18:4953969-4953719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):57, 111

               
               
               Conread position:590-834
               
               
               Cow position:chr18:41837878-41838127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):58, 117

               
               
               Conread position:591-834
               
               
               Cow position:chr18:27834549-27834797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):55, 118

               
               
               Conread position:592-834
               
               
               Cow position:chr18:39273918-39273671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):54, 17

               
               
               Conread position:609-807
               
               
               Cow position:chr18:42241819-42242019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):28, 63

               
               
               Conread position:609-825
               
               
               Cow position:chr18:43472383-43472604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):37, 89

               
               
               Conread position:613-819
               
               
               Cow position:chr18:33849277-33849070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 85

               
               
               Conread position:616-825
               
               
               Cow position:chr18:36908886-36909097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):19, 85

               
               
               Conread position:616-825
               
               
               Cow position:chr18:36913415-36913628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):19, 86

               
               
               Conread position:621-834
               
               
               Cow position:chr18:11271640-11271858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):26, 84

               
               
               Conread position:621-834
               
               
               Cow position:chr18:29223529-29223314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 115

               
               
               Conread position:637-831
               
               
               Cow position:chr18:17095986-17095795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):175, 9

               
               
               Conread position:645-834
               
               
               Cow position:chr18:26335931-26336114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):45, 25

               
               
               Conread position:645-882
               
               
               Cow position:chr18:1023019-1023252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):170, 54

               
               
               Conread position:666-802
               
               
               Cow position:chr18:19401156-19401291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:666-832
               
               
               Cow position:chr18:13964810-13964976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr18:16092972-16092805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr18:37700340-37700507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:677-834
               
               
               Cow position:chr18:18216651-18216495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:681-825
               
               
               Cow position:chr18:51619365-51619508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:698-815
               
               
               Cow position:chr18:8663241-8663124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr18:23856155-23856019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:706-834
               
               
               Cow position:chr18:26243467-26243595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-614
               
               
               Cow position:chr19:44839301-44839954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 21

               
               
               Conread position:1-834
               
               
               Cow position:chr19:29394224-29393333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:895
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 164

               
               
               Conread position:73-221
               
               
               Cow position:chr19:18016403-18016552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-329
               
               
               Cow position:chr19:33932654-33932936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 31

               
               
               Conread position:73-403
               
               
               Cow position:chr19:29071233-29071587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-407
               
               
               Cow position:chr19:26976519-26976870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):28, 59

               
               
               Conread position:73-410
               
               
               Cow position:chr19:39924158-39923776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:73-467
               
               
               Cow position:chr19:52147618-52148047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):86, 28

               
               
               Conread position:73-542
               
               
               Cow position:chr19:12600882-12601401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 34

               
               
               Conread position:73-548
               
               
               Cow position:chr19:27612690-27613211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 34

               
               
               Conread position:73-644
               
               
               Cow position:chr19:32209180-32208594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 34

               
               
               Conread position:73-773
               
               
               Cow position:chr19:36352091-36351330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-825
               
               
               Cow position:chr19:5733313-5732501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:822
               
               
               Alignm identity:552
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:73-834
               
               
               Cow position:chr19:164327-165137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:823
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:93-832
               
               
               Cow position:chr19:40248565-40247770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:800
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 35

               
               
               Conread position:96-481
               
               
               Cow position:chr19:14180216-14180635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:285
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):7, 27

               
               
               Conread position:109-540
               
               
               Cow position:chr19:1581134-1581609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:322
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:132-831
               
               
               Cow position:chr19:33593758-33594494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 147

               
               
               Conread position:139-624
               
               
               Cow position:chr19:35843587-35843062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:359
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):20, 43

               
               
               Conread position:142-452
               
               
               Cow position:chr19:19500958-19501297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:142-819
               
               
               Cow position:chr19:176211-175474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:142-834
               
               
               Cow position:chr19:40848755-40849496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:143-369
               
               
               Cow position:chr19:7053921-7054160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr19:5679917-5680177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr19:5887886-5887626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr19:7346117-7345857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr19:30518467-30518207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr19:35081963-35081703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-410
               
               
               Cow position:chr19:42240886-42241180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-453
               
               
               Cow position:chr19:44216115-44216456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-467
               
               
               Cow position:chr19:15797154-15796803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:252
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):74, 10

               
               
               Conread position:143-467
               
               
               Cow position:chr19:30237438-30237089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-522
               
               
               Cow position:chr19:40883800-40884202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:282
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-580
               
               
               Cow position:chr19:23488490-23488015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-622
               
               
               Cow position:chr19:7065390-7064900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:143-633
               
               
               Cow position:chr19:12209197-12209737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:361
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-645
               
               
               Cow position:chr19:20671872-20672398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:143-695
               
               
               Cow position:chr19:55217538-55216933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:401
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-718
               
               
               Cow position:chr19:41204493-41205119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-721
               
               
               Cow position:chr19:40790624-40791252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-730
               
               
               Cow position:chr19:25085927-25085304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-801
               
               
               Cow position:chr19:7472782-7472086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-822
               
               
               Cow position:chr19:28794597-28795316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr19:30037173-30037916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr19:33945300-33944558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:144-382
               
               
               Cow position:chr19:23383172-23382913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-532
               
               
               Cow position:chr19:21200984-21200573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:272
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:144-808
               
               
               Cow position:chr19:28597103-28596392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:144-834
               
               
               Cow position:chr19:15444185-15444872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):517, 0

               
               
               Conread position:145-387
               
               
               Cow position:chr19:4195145-4194905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):152, 11

               
               
               Conread position:145-387
               
               
               Cow position:chr19:15068587-15068843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-395
               
               
               Cow position:chr19:32457042-32456774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-462
               
               
               Cow position:chr19:39077165-39076830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):5, 14

               
               
               Conread position:145-522
               
               
               Cow position:chr19:28575670-28576076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:145-528
               
               
               Cow position:chr19:29367260-29366843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-528
               
               
               Cow position:chr19:29624768-29624351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-617
               
               
               Cow position:chr19:50561792-50561279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-761
               
               
               Cow position:chr19:35381360-35382005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 11

               
               
               Conread position:145-763
               
               
               Cow position:chr19:35362827-35363466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-815
               
               
               Cow position:chr19:42580594-42581296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 19

               
               
               Conread position:146-284
               
               
               Cow position:chr19:50724397-50724249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:146-480
               
               
               Cow position:chr19:38396887-38397241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):78, 7

               
               
               Conread position:146-616
               
               
               Cow position:chr19:12652606-12652084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 14

               
               
               Conread position:146-644
               
               
               Cow position:chr19:930550-930007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 10

               
               
               Conread position:146-824
               
               
               Cow position:chr19:37844045-37844777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 350

               
               
               Conread position:147-442
               
               
               Cow position:chr19:47188371-47188678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):86, 68

               
               
               Conread position:147-452
               
               
               Cow position:chr19:20433510-20433844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-453
               
               
               Cow position:chr19:50833175-50833509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):12, 320

               
               
               Conread position:147-580
               
               
               Cow position:chr19:14158137-14157668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:320
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:147-644
               
               
               Cow position:chr19:34905593-34906139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-645
               
               
               Cow position:chr19:4447944-4447399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-831
               
               
               Cow position:chr19:2260717-2261440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 405

               
               
               Conread position:147-834
               
               
               Cow position:chr19:2588916-2588186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:536
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 389

               
               
               Conread position:147-834
               
               
               Cow position:chr19:9704460-9705198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:752
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:147-834
               
               
               Cow position:chr19:33877148-33876407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 604

               
               
               Conread position:148-382
               
               
               Cow position:chr19:12551371-12551622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:148-382
               
               
               Cow position:chr19:12776972-12776715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:150-529
               
               
               Cow position:chr19:6556339-6555935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):72, 9

               
               
               Conread position:150-834
               
               
               Cow position:chr19:48534447-48533719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 9

               
               
               Conread position:153-774
               
               
               Cow position:chr19:55421759-55421095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:439
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):6, 17

               
               
               Conread position:154-382
               
               
               Cow position:chr19:345117-344867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr19:29365249-29365009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-442
               
               
               Cow position:chr19:14581002-14580684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr19:20928896-20928569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-480
               
               
               Cow position:chr19:30937497-30937855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:158-506
               
               
               Cow position:chr19:29627987-29628355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):64, 131

               
               
               Conread position:158-528
               
               
               Cow position:chr19:3406900-3406495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-536
               
               
               Cow position:chr19:26518616-26519023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:281
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:158-540
               
               
               Cow position:chr19:3086509-3086093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:158-547
               
               
               Cow position:chr19:15720195-15720581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 67

               
               
               Conread position:158-551
               
               
               Cow position:chr19:35781597-35781165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr19:10196128-10195667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:302
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-645
               
               
               Cow position:chr19:19173380-19172846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 85

               
               
               Conread position:158-692
               
               
               Cow position:chr19:16316499-16317076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 282

               
               
               Conread position:158-706
               
               
               Cow position:chr19:27081695-27082289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 329

               
               
               Conread position:158-747
               
               
               Cow position:chr19:48626775-48626137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 102

               
               
               Conread position:158-788
               
               
               Cow position:chr19:15071007-15070348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 348

               
               
               Conread position:158-807
               
               
               Cow position:chr19:30515322-30516009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 350

               
               
               Conread position:158-825
               
               
               Cow position:chr19:42054-41334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 588

               
               
               Conread position:158-825
               
               
               Cow position:chr19:777236-776514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-825
               
               
               Cow position:chr19:5043981-5044674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 16

               
               
               Conread position:158-825
               
               
               Cow position:chr19:55163937-55164653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 589

               
               
               Conread position:158-834
               
               
               Cow position:chr19:7480244-7480944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 67

               
               
               Conread position:158-834
               
               
               Cow position:chr19:8206299-8207006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 277

               
               
               Conread position:158-834
               
               
               Cow position:chr19:20612054-20611325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr19:22512961-22512236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 91

               
               
               Conread position:158-834
               
               
               Cow position:chr19:24734857-24734134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 299

               
               
               Conread position:158-834
               
               
               Cow position:chr19:55843714-55842991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 273

               
               
               Conread position:159-457
               
               
               Cow position:chr19:39750868-39750564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):82, 35

               
               
               Conread position:159-821
               
               
               Cow position:chr19:17883659-17882972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 197

               
               
               Conread position:159-834
               
               
               Cow position:chr19:1152381-1151665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 284

               
               
               Conread position:160-387
               
               
               Cow position:chr19:42294991-42295222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):109, 65

               
               
               Conread position:160-407
               
               
               Cow position:chr19:15766492-15766234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):65, 38

               
               
               Conread position:160-453
               
               
               Cow position:chr19:42274508-42274828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:160-578
               
               
               Cow position:chr19:46873307-46873769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:324
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):65, 27

               
               
               Conread position:160-804
               
               
               Cow position:chr19:3177179-3176487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 506

               
               
               Conread position:160-824
               
               
               Cow position:chr19:28370224-28369533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 101

               
               
               Conread position:160-825
               
               
               Cow position:chr19:208213-207500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 198

               
               
               Conread position:160-834
               
               
               Cow position:chr19:33119006-33119733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 593

               
               
               Conread position:160-834
               
               
               Cow position:chr19:39181817-39182547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 36

               
               
               Conread position:160-834
               
               
               Cow position:chr19:39602776-39603468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:464
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):61, 38

               
               
               Conread position:160-834
               
               
               Cow position:chr19:43149301-43148573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 595

               
               
               Conread position:161-682
               
               
               Cow position:chr19:32140714-32140142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:378
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):62, 380

               
               
               Conread position:161-825
               
               
               Cow position:chr19:40015876-40016586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 126

               
               
               Conread position:161-834
               
               
               Cow position:chr19:33625285-33624577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 274

               
               
               Conread position:162-562
               
               
               Cow position:chr19:32952537-32952098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 112

               
               
               Conread position:162-834
               
               
               Cow position:chr19:5902744-5902018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 592

               
               
               Conread position:164-631
               
               
               Cow position:chr19:46821561-46821054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 41

               
               
               Conread position:166-831
               
               
               Cow position:chr19:7491796-7491094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 148

               
               
               Conread position:169-528
               
               
               Cow position:chr19:35782690-35783082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:169-825
               
               
               Cow position:chr19:34985792-34985103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 402

               
               
               Conread position:169-834
               
               
               Cow position:chr19:10613937-10613219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 584

               
               
               Conread position:173-381
               
               
               Cow position:chr19:55215235-55215465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:174-573
               
               
               Cow position:chr19:39697178-39696751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):48, 75

               
               
               Conread position:175-382
               
               
               Cow position:chr19:736045-736274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:180-540
               
               
               Cow position:chr19:7078954-7078556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:183-834
               
               
               Cow position:chr19:4389269-4388574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 187

               
               
               Conread position:187-720
               
               
               Cow position:chr19:31782261-31781676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 559

               
               
               Conread position:189-483
               
               
               Cow position:chr19:7610285-7609977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):47, 273

               
               
               Conread position:189-522
               
               
               Cow position:chr19:3221781-3221434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 36

               
               
               Conread position:189-825
               
               
               Cow position:chr19:435647-436336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 470

               
               
               Conread position:189-834
               
               
               Cow position:chr19:743033-743709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 244

               
               
               Conread position:189-834
               
               
               Cow position:chr19:2269615-2270310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:189-834
               
               
               Cow position:chr19:30473459-30474157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 270

               
               
               Conread position:191-732
               
               
               Cow position:chr19:20403965-20403376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 10

               
               
               Conread position:201-579
               
               
               Cow position:chr19:6776-6360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):22, 242

               
               
               Conread position:208-825
               
               
               Cow position:chr19:19389496-19388834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 537

               
               
               Conread position:208-834
               
               
               Cow position:chr19:33528509-33527838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 537

               
               
               Conread position:218-792
               
               
               Cow position:chr19:405800-405182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 520

               
               
               Conread position:221-685
               
               
               Cow position:chr19:27034205-27034678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:321
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):17, 84

               
               
               Conread position:221-787
               
               
               Cow position:chr19:39726445-39725837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 397

               
               
               Conread position:221-804
               
               
               Cow position:chr19:4599659-4599058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:396
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):19, 182

               
               
               Conread position:221-834
               
               
               Cow position:chr19:36189347-36188715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 289

               
               
               Conread position:223-626
               
               
               Cow position:chr19:2019118-2019554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:297
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):13, 157

               
               
               Conread position:223-727
               
               
               Cow position:chr19:39394848-39394299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:369
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 510

               
               
               Conread position:236-771
               
               
               Cow position:chr19:28912162-28911583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:370
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):59, 12

               
               
               Conread position:261-830
               
               
               Cow position:chr19:37653761-37653171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 144

               
               
               Conread position:262-787
               
               
               Cow position:chr19:24671899-24672461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:354
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):77, 26

               
               
               Conread position:269-409
               
               
               Cow position:chr19:42725600-42725458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 16

               
               
               Conread position:277-819
               
               
               Cow position:chr19:1293933-1293356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 451

               
               
               Conread position:282-594
               
               
               Cow position:chr19:1663645-1663311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:288-721
               
               
               Cow position:chr19:42867037-42866578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 303

               
               
               Conread position:289-787
               
               
               Cow position:chr19:14156537-14157063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 206

               
               
               Conread position:290-834
               
               
               Cow position:chr19:197584-197004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:377
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):49, 325

               
               
               Conread position:290-834
               
               
               Cow position:chr19:7345589-7345025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 129

               
               
               Conread position:291-747
               
               
               Cow position:chr19:799935-799456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:312
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):50, 127

               
               
               Conread position:293-807
               
               
               Cow position:chr19:38811921-38811412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 124

               
               
               Conread position:294-812
               
               
               Cow position:chr19:45464699-45464159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 189

               
               
               Conread position:295-540
               
               
               Cow position:chr19:27347503-27347752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):44, 166

               
               
               Conread position:296-825
               
               
               Cow position:chr19:34653571-34654104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:338
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):43, 122

               
               
               Conread position:316-698
               
               
               Cow position:chr19:444394-444801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):25, 168

               
               
               Conread position:341-804
               
               
               Cow position:chr19:48478077-48477595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 61

               
               
               Conread position:344-786
               
               
               Cow position:chr19:39339558-39340028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 278

               
               
               Conread position:345-824
               
               
               Cow position:chr19:1486534-1487023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:329
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):41, 235

               
               
               Conread position:348-834
               
               
               Cow position:chr19:55378401-55377886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 170

               
               
               Conread position:356-702
               
               
               Cow position:chr19:5026692-5027062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 317

               
               
               Conread position:380-834
               
               
               Cow position:chr19:29364832-29364385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 133

               
               
               Conread position:386-755
               
               
               Cow position:chr19:33573255-33573647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:272
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):29, 337

               
               
               Conread position:410-806
               
               
               Cow position:chr19:3033699-3034097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):20, 104

               
               
               Conread position:420-834
               
               
               Cow position:chr19:730567-730999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 73

               
               
               Conread position:421-733
               
               
               Cow position:chr19:1564370-1564704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):9, 295

               
               
               Conread position:421-811
               
               
               Cow position:chr19:374286-374696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 37

               
               
               Conread position:421-815
               
               
               Cow position:chr19:344804-344394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 48

               
               
               Conread position:422-809
               
               
               Cow position:chr19:5384838-5384433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):94, 75

               
               
               Conread position:426-635
               
               
               Cow position:chr19:15766152-15765945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):94, 48

               
               
               Conread position:427-822
               
               
               Cow position:chr19:16478448-16478863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 259

               
               
               Conread position:427-831
               
               
               Cow position:chr19:47189028-47189457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:298
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):98, 283

               
               
               Conread position:427-834
               
               
               Cow position:chr19:35621947-35621514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 296

               
               
               Conread position:427-834
               
               
               Cow position:chr19:42725077-42724667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 21

               
               
               Conread position:429-645
               
               
               Cow position:chr19:47670327-47670095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:430-778
               
               
               Cow position:chr19:3085269-3085639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):59, 109

               
               
               Conread position:430-823
               
               
               Cow position:chr19:42466397-42465994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):94, 52

               
               
               Conread position:438-834
               
               
               Cow position:chr19:3114707-3114301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 73

               
               
               Conread position:442-815
               
               
               Cow position:chr19:38558896-38559277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):37, 57

               
               
               Conread position:491-831
               
               
               Cow position:chr19:12776462-12776116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):34, 223

               
               
               Conread position:491-833
               
               
               Cow position:chr19:39750566-39750216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 215

               
               
               Conread position:491-834
               
               
               Cow position:chr19:30518159-30517794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:254
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):37, 233

               
               
               Conread position:496-805
               
               
               Cow position:chr19:35995023-35994719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):77, 17

               
               
               Conread position:496-822
               
               
               Cow position:chr19:28801227-28801558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):34, 16

               
               
               Conread position:498-777
               
               
               Cow position:chr19:34655774-34656068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 186

               
               
               Conread position:502-834
               
               
               Cow position:chr19:29628512-29628847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 81

               
               
               Conread position:505-822
               
               
               Cow position:chr19:672492-672798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:505-834
               
               
               Cow position:chr19:5781206-5781543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:506-807
               
               
               Cow position:chr19:36708058-36708360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:514-834
               
               
               Cow position:chr19:30758778-30758453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:520-804
               
               
               Cow position:chr19:36998916-36999200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:521-748
               
               
               Cow position:chr19:14527951-14527727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):125, 13

               
               
               Conread position:521-834
               
               
               Cow position:chr19:12600502-12600201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):125, 13

               
               
               Conread position:521-834
               
               
               Cow position:chr19:33641380-33641062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):51, 16

               
               
               Conread position:523-814
               
               
               Cow position:chr19:33674914-33675207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):112, 25

               
               
               Conread position:526-834
               
               
               Cow position:chr19:6555285-6554969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):13, 130

               
               
               Conread position:546-819
               
               
               Cow position:chr19:40833984-40834266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):27, 162

               
               
               Conread position:546-834
               
               
               Cow position:chr19:21337548-21337841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):102, 161

               
               
               Conread position:568-834
               
               
               Cow position:chr19:1354020-1354291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):80, 134

               
               
               Conread position:568-834
               
               
               Cow position:chr19:1663288-1663021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 134

               
               
               Conread position:569-721
               
               
               Cow position:chr19:27613524-27613683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 134

               
               
               Conread position:569-834
               
               
               Cow position:chr19:130859-131133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):64, 133

               
               
               Conread position:569-834
               
               
               Cow position:chr19:1579372-1579101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):77, 133

               
               
               Conread position:569-834
               
               
               Cow position:chr19:35611564-35611839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 138

               
               
               Conread position:570-832
               
               
               Cow position:chr19:20661951-20662226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 15

               
               
               Conread position:571-834
               
               
               Cow position:chr19:12552973-12553241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):77, 136

               
               
               Conread position:591-834
               
               
               Cow position:chr19:7293001-7293249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-834
               
               
               Cow position:chr19:55979651-55979898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):50, 102

               
               
               Conread position:593-834
               
               
               Cow position:chr19:10194874-10194633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):54, 107

               
               
               Conread position:619-803
               
               
               Cow position:chr19:42296652-42296841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):28, 83

               
               
               Conread position:630-825
               
               
               Cow position:chr19:158658-158852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:638-803
               
               
               Cow position:chr19:42295686-42295520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):10, 60

               
               
               Conread position:645-788
               
               
               Cow position:chr19:22391099-22390957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:645-819
               
               
               Cow position:chr19:52148371-52148543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:649-832
               
               
               Cow position:chr19:30561322-30561140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:666-782
               
               
               Cow position:chr19:10864551-10864666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr19:12651894-12651727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:667-822
               
               
               Cow position:chr19:890039-890193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:667-828
               
               
               Cow position:chr19:33649210-33649372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):100, 29

               
               
               Conread position:670-807
               
               
               Cow position:chr19:42870193-42870058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:674-834
               
               
               Cow position:chr19:20107889-20107729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-825
               
               
               Cow position:chr19:524927-524800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr19:474369-474505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:701-822
               
               
               Cow position:chr19:1585591-1585470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:702-825
               
               
               Cow position:chr19:258381-258259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:702-834
               
               
               Cow position:chr19:16317486-16317618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:704-831
               
               
               Cow position:chr19:27614317-27614444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-786
               
               
               Cow position:chr2:72543144-72542320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:837
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 400

               
               
               Conread position:62-337
               
               
               Cow position:chr2:72789747-72790040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:62-834
               
               
               Cow position:chr2:63067592-63068443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:858
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 14

               
               
               Conread position:69-834
               
               
               Cow position:chr2:8121961-8121131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:835
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 38

               
               
               Conread position:73-222
               
               
               Cow position:chr2:76123098-76123250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:73-328
               
               
               Cow position:chr2:65930153-65930433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):74, 27

               
               
               Conread position:73-382
               
               
               Cow position:chr2:23994760-23995107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:73-382
               
               
               Cow position:chr2:57516752-57516403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:73-382
               
               
               Cow position:chr2:62999505-62999853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 39

               
               
               Conread position:73-398
               
               
               Cow position:chr2:16018785-16019124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):58, 28

               
               
               Conread position:73-452
               
               
               Cow position:chr2:39107516-39107093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 26

               
               
               Conread position:73-453
               
               
               Cow position:chr2:6593975-6593546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:294
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-480
               
               
               Cow position:chr2:34571967-34572415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:312
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:73-518
               
               
               Cow position:chr2:77281439-77280949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 39

               
               
               Conread position:73-522
               
               
               Cow position:chr2:19809862-19809362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:331
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):66, 37

               
               
               Conread position:73-540
               
               
               Cow position:chr2:68191105-68191605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:345
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):76, 38

               
               
               Conread position:73-572
               
               
               Cow position:chr2:19540165-19540725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:376
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:73-579
               
               
               Cow position:chr2:5606656-5606101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:370
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):19, 92

               
               
               Conread position:73-579
               
               
               Cow position:chr2:37120695-37120150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:363
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):76, 31

               
               
               Conread position:73-645
               
               
               Cow position:chr2:46265565-46264931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:415
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):71, 34

               
               
               Conread position:73-704
               
               
               Cow position:chr2:5901487-5902169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:449
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):74, 18

               
               
               Conread position:73-761
               
               
               Cow position:chr2:63889980-63890728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:755
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 34

               
               
               Conread position:73-806
               
               
               Cow position:chr2:9688059-9688837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 28

               
               
               Conread position:73-818
               
               
               Cow position:chr2:6883520-6882753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 34

               
               
               Conread position:73-825
               
               
               Cow position:chr2:19212541-19213318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:808
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 29

               
               
               Conread position:73-829
               
               
               Cow position:chr2:11152725-11153544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:825
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-832
               
               
               Cow position:chr2:32408999-32409806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:820
               
               
               Alignm identity:589
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr2:60955888-60955072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:825
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:74-387
               
               
               Cow position:chr2:21698172-21697838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):31, 39

               
               
               Conread position:74-635
               
               
               Cow position:chr2:9911531-9910918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:401
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):74, 33

               
               
               Conread position:74-641
               
               
               Cow position:chr2:52159408-52160015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:399
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):21, 17

               
               
               Conread position:74-807
               
               
               Cow position:chr2:16752635-16753427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:801
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 38

               
               
               Conread position:74-834
               
               
               Cow position:chr2:20856343-20857134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:814
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 112

               
               
               Conread position:74-834
               
               
               Cow position:chr2:41157434-41156612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:837
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 29

               
               
               Conread position:76-639
               
               
               Cow position:chr2:31499493-31498868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 25

               
               
               Conread position:109-834
               
               
               Cow position:chr2:19014564-19013793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:537
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:122-819
               
               
               Cow position:chr2:3840437-3839715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 144

               
               
               Conread position:122-834
               
               
               Cow position:chr2:44189608-44188877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 176

               
               
               Conread position:123-720
               
               
               Cow position:chr2:72535483-72534833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 140

               
               
               Conread position:123-849
               
               
               Cow position:chr2:5867123-5867895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 121

               
               
               Conread position:128-328
               
               
               Cow position:chr2:43609818-43610018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):26, 73

               
               
               Conread position:133-720
               
               
               Cow position:chr2:26129680-26130320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 614

               
               
               Conread position:138-803
               
               
               Cow position:chr2:28637848-28638545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 62

               
               
               Conread position:139-592
               
               
               Cow position:chr2:78301225-78301708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:339
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):10, 61

               
               
               Conread position:139-644
               
               
               Cow position:chr2:42838897-42839418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:350
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):10, 103

               
               
               Conread position:142-330
               
               
               Cow position:chr2:41247180-41246985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):79, 10

               
               
               Conread position:142-334
               
               
               Cow position:chr2:28480657-28480857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:142-453
               
               
               Cow position:chr2:15686563-15686236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:142-528
               
               
               Cow position:chr2:80839992-80840410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 10

               
               
               Conread position:142-580
               
               
               Cow position:chr2:12935073-12935534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:307
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:142-724
               
               
               Cow position:chr2:1202583-1201967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:142-822
               
               
               Cow position:chr2:33080605-33081320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:143-293
               
               
               Cow position:chr2:39119808-39119651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-337
               
               
               Cow position:chr2:44006452-44006246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-337
               
               
               Cow position:chr2:86532688-86532477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-369
               
               
               Cow position:chr2:76341249-76341496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr2:12443136-12442877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr2:57557516-57557776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr2:70023608-70023348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-382
               
               
               Cow position:chr2:70916131-70915870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr2:81260084-81259825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:143-387
               
               
               Cow position:chr2:73467199-73467457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:143-395
               
               
               Cow position:chr2:4255130-4255379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):130, 13

               
               
               Conread position:143-402
               
               
               Cow position:chr2:65452021-65451744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):82, 10

               
               
               Conread position:143-442
               
               
               Cow position:chr2:3079251-3079581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:143-451
               
               
               Cow position:chr2:71164307-71164620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:143-452
               
               
               Cow position:chr2:1434496-1434180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):87, 13

               
               
               Conread position:143-452
               
               
               Cow position:chr2:16172095-16172435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-452
               
               
               Cow position:chr2:31783362-31783025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr2:4224220-4224550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-453
               
               
               Cow position:chr2:5318322-5317982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr2:15884696-15885037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr2:52857135-52857476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr2:54148465-54148124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr2:56007928-56007587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr2:56199301-56198960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr2:65935032-65935372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-453
               
               
               Cow position:chr2:80892893-80893235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-456
               
               
               Cow position:chr2:10738732-10739059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-456
               
               
               Cow position:chr2:33287947-33288283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-468
               
               
               Cow position:chr2:38335553-38335197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-468
               
               
               Cow position:chr2:78749955-78749604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-480
               
               
               Cow position:chr2:27179547-27179179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:266
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-510
               
               
               Cow position:chr2:31501608-31501207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:273
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-515
               
               
               Cow position:chr2:37008833-37008438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-517
               
               
               Cow position:chr2:30657178-30657585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-540
               
               
               Cow position:chr2:47618758-47618324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:297
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-548
               
               
               Cow position:chr2:9173850-9174274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-551
               
               
               Cow position:chr2:41300987-41300542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:303
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-551
               
               
               Cow position:chr2:49461597-49461152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:302
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-580
               
               
               Cow position:chr2:56306657-56307132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:316
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-627
               
               
               Cow position:chr2:9956052-9956573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:322
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-633
               
               
               Cow position:chr2:63706972-63707509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:362
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-634
               
               
               Cow position:chr2:29967157-29967695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:363
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-642
               
               
               Cow position:chr2:70524934-70524388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-644
               
               
               Cow position:chr2:2018733-2018195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 9

               
               
               Conread position:143-645
               
               
               Cow position:chr2:19288149-19288681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-645
               
               
               Cow position:chr2:49827360-49827909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-664
               
               
               Cow position:chr2:36628949-36629491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-669
               
               
               Cow position:chr2:31048043-31047472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-685
               
               
               Cow position:chr2:57586905-57587500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-692
               
               
               Cow position:chr2:2208490-2209090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:404
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-692
               
               
               Cow position:chr2:2212314-2212914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:403
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-713
               
               
               Cow position:chr2:36997537-36996928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:143-746
               
               
               Cow position:chr2:6529005-6528351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-751
               
               
               Cow position:chr2:4340536-4339876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-761
               
               
               Cow position:chr2:53203947-53204619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-765
               
               
               Cow position:chr2:44931839-44932504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:143-765
               
               
               Cow position:chr2:56054919-56054255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-768
               
               
               Cow position:chr2:11899567-11898888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 20

               
               
               Conread position:143-782
               
               
               Cow position:chr2:2603840-2603150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-782
               
               
               Cow position:chr2:16717732-16718416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:143-796
               
               
               Cow position:chr2:35949237-35949921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-802
               
               
               Cow position:chr2:12752101-12752809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-805
               
               
               Cow position:chr2:4399953-4400666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:143-806
               
               
               Cow position:chr2:16319611-16318901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:143-806
               
               
               Cow position:chr2:53557342-53556629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-819
               
               
               Cow position:chr2:5998006-5997279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 18

               
               
               Conread position:143-819
               
               
               Cow position:chr2:10972248-10971527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-819
               
               
               Cow position:chr2:72016993-72016265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-825
               
               
               Cow position:chr2:25742094-25742822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-832
               
               
               Cow position:chr2:6698077-6698776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr2:982191-981423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:771
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr2:1186678-1187430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:756
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr2:4416887-4417616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 10

               
               
               Conread position:143-834
               
               
               Cow position:chr2:4450872-4451614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr2:4742542-4741800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr2:7906109-7905379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:143-834
               
               
               Cow position:chr2:10262232-10262972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr2:13066830-13067570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-834
               
               
               Cow position:chr2:15568915-15569646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr2:22081081-22080347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr2:23492952-23492235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr2:31407167-31407910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr2:46182357-46183100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:526
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr2:50979994-50980719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr2:52128159-52128885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr2:54740645-54739920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:143-834
               
               
               Cow position:chr2:70498462-70499191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 18

               
               
               Conread position:143-834
               
               
               Cow position:chr2:72939576-72940314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:144-330
               
               
               Cow position:chr2:35194883-35194682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-409
               
               
               Cow position:chr2:70933777-70934064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:144-453
               
               
               Cow position:chr2:37044449-37044109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-467
               
               
               Cow position:chr2:15963371-15963725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-616
               
               
               Cow position:chr2:4796177-4795665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:336
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):46, 9

               
               
               Conread position:144-645
               
               
               Cow position:chr2:50431472-50432015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:371
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-808
               
               
               Cow position:chr2:63288741-63289451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 12

               
               
               Conread position:144-823
               
               
               Cow position:chr2:3786809-3787501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 67

               
               
               Conread position:144-834
               
               
               Cow position:chr2:36882524-36883227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:461
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):77, 12

               
               
               Conread position:145-382
               
               
               Cow position:chr2:60674738-60674483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):74, 14

               
               
               Conread position:145-438
               
               
               Cow position:chr2:39912942-39912622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):76, 8

               
               
               Conread position:145-442
               
               
               Cow position:chr2:38260024-38260355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:145-540
               
               
               Cow position:chr2:63070113-63070545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:294
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-683
               
               
               Cow position:chr2:27358238-27357664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:393
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):56, 8

               
               
               Conread position:145-748
               
               
               Cow position:chr2:19048694-19049346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-760
               
               
               Cow position:chr2:12237848-12238481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-825
               
               
               Cow position:chr2:77859494-77858774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr2:8529847-8529121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr2:13726455-13727148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-834
               
               
               Cow position:chr2:16072005-16072715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 11

               
               
               Conread position:145-834
               
               
               Cow position:chr2:16326758-16327488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr2:18020737-18021478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:145-834
               
               
               Cow position:chr2:57339118-57338392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:146-387
               
               
               Cow position:chr2:70894953-70894695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):73, 14

               
               
               Conread position:146-580
               
               
               Cow position:chr2:5797627-5798106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:327
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):13, 364

               
               
               Conread position:146-743
               
               
               Cow position:chr2:74762056-74761406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 601

               
               
               Conread position:146-820
               
               
               Cow position:chr2:67187676-67188387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 74

               
               
               Conread position:146-834
               
               
               Cow position:chr2:42502700-42501973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:538
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 10

               
               
               Conread position:147-342
               
               
               Cow position:chr2:66267400-66267192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):12, 116

               
               
               Conread position:147-377
               
               
               Cow position:chr2:51414115-51413872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-381
               
               
               Cow position:chr2:84866900-84866646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-387
               
               
               Cow position:chr2:17426594-17426332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):12, 255

               
               
               Conread position:147-387
               
               
               Cow position:chr2:79242052-79242305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-394
               
               
               Cow position:chr2:23271519-23271790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-453
               
               
               Cow position:chr2:56365770-56366108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):12, 190

               
               
               Conread position:147-456
               
               
               Cow position:chr2:65023575-65023252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):12, 211

               
               
               Conread position:147-463
               
               
               Cow position:chr2:45913217-45913560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):12, 115

               
               
               Conread position:147-515
               
               
               Cow position:chr2:71119609-71119230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):12, 72

               
               
               Conread position:147-548
               
               
               Cow position:chr2:34048751-34049182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):12, 181

               
               
               Conread position:147-580
               
               
               Cow position:chr2:17940869-17941354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:333
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):12, 141

               
               
               Conread position:147-607
               
               
               Cow position:chr2:32417460-32417954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 255

               
               
               Conread position:147-631
               
               
               Cow position:chr2:19294060-19293563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:350
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):12, 125

               
               
               Conread position:147-644
               
               
               Cow position:chr2:104570-105114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 332

               
               
               Conread position:147-644
               
               
               Cow position:chr2:21169515-21168977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 309

               
               
               Conread position:147-644
               
               
               Cow position:chr2:24928559-24928015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 478

               
               
               Conread position:147-709
               
               
               Cow position:chr2:50565484-50564872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 45

               
               
               Conread position:147-746
               
               
               Cow position:chr2:44476313-44476963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 592

               
               
               Conread position:147-747
               
               
               Cow position:chr2:10677526-10678149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:397
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):93, 77

               
               
               Conread position:147-765
               
               
               Cow position:chr2:2590529-2591178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 144

               
               
               Conread position:147-776
               
               
               Cow position:chr2:43210306-43209633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 265

               
               
               Conread position:147-781
               
               
               Cow position:chr2:51921391-51922076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 94

               
               
               Conread position:147-782
               
               
               Cow position:chr2:32062564-32063241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:147-786
               
               
               Cow position:chr2:53031253-53030574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 108

               
               
               Conread position:147-804
               
               
               Cow position:chr2:25385599-25384924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:426
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):12, 160

               
               
               Conread position:147-815
               
               
               Cow position:chr2:46272057-46272759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 86

               
               
               Conread position:147-815
               
               
               Cow position:chr2:51480346-51479624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 383

               
               
               Conread position:147-819
               
               
               Cow position:chr2:50080740-50080014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 131

               
               
               Conread position:147-822
               
               
               Cow position:chr2:1199673-1200379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 202

               
               
               Conread position:147-823
               
               
               Cow position:chr2:35359165-35358455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:458
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:147-829
               
               
               Cow position:chr2:12286370-12285648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 286

               
               
               Conread position:147-829
               
               
               Cow position:chr2:14556564-14557287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 316

               
               
               Conread position:147-831
               
               
               Cow position:chr2:1426503-1427198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 73

               
               
               Conread position:147-833
               
               
               Cow position:chr2:36058281-36059009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 52

               
               
               Conread position:147-834
               
               
               Cow position:chr2:279078-279809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 247

               
               
               Conread position:147-834
               
               
               Cow position:chr2:10740977-10741705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 315

               
               
               Conread position:147-834
               
               
               Cow position:chr2:24876027-24876749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 265

               
               
               Conread position:147-834
               
               
               Cow position:chr2:25885375-25886119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 486

               
               
               Conread position:147-834
               
               
               Cow position:chr2:29219138-29218415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 117

               
               
               Conread position:147-834
               
               
               Cow position:chr2:34491591-34490856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 40

               
               
               Conread position:147-834
               
               
               Cow position:chr2:57938571-57937833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 288

               
               
               Conread position:147-834
               
               
               Cow position:chr2:67976875-67977567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:457
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):12, 56

               
               
               Conread position:147-834
               
               
               Cow position:chr2:72930916-72931649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 103

               
               
               Conread position:148-283
               
               
               Cow position:chr2:12736664-12736805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-402
               
               
               Cow position:chr2:14349180-14348892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-410
               
               
               Cow position:chr2:14853733-14853442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-451
               
               
               Cow position:chr2:76984743-76985072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-462
               
               
               Cow position:chr2:62225589-62225250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):77, 93

               
               
               Conread position:148-695
               
               
               Cow position:chr2:78854960-78854386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:385
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):13, 164

               
               
               Conread position:148-807
               
               
               Cow position:chr2:852484-853192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:453
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):11, 479

               
               
               Conread position:148-825
               
               
               Cow position:chr2:21981582-21982312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 286

               
               
               Conread position:148-834
               
               
               Cow position:chr2:16331355-16330631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 148

               
               
               Conread position:148-834
               
               
               Cow position:chr2:28797025-28796280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 613

               
               
               Conread position:148-834
               
               
               Cow position:chr2:45917592-45918334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 607

               
               
               Conread position:148-834
               
               
               Cow position:chr2:53003039-53003769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 102

               
               
               Conread position:150-382
               
               
               Cow position:chr2:80288584-80288836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):72, 9

               
               
               Conread position:150-436
               
               
               Cow position:chr2:14806929-14807241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):68, 8

               
               
               Conread position:150-580
               
               
               Cow position:chr2:55876808-55876343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 8

               
               
               Conread position:150-683
               
               
               Cow position:chr2:825783-826357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 8

               
               
               Conread position:151-482
               
               
               Cow position:chr2:30388784-30388439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):71, 8

               
               
               Conread position:151-834
               
               
               Cow position:chr2:25930239-25930971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 583

               
               
               Conread position:152-442
               
               
               Cow position:chr2:9370670-9370996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:153-825
               
               
               Cow position:chr2:62683836-62683108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 116

               
               
               Conread position:153-834
               
               
               Cow position:chr2:12596108-12595413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 143

               
               
               Conread position:154-834
               
               
               Cow position:chr2:817609-816906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 168

               
               
               Conread position:156-387
               
               
               Cow position:chr2:48130457-48130219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):66, 178

               
               
               Conread position:156-820
               
               
               Cow position:chr2:34502897-34502218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 40

               
               
               Conread position:157-834
               
               
               Cow position:chr2:50059832-50060561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 595

               
               
               Conread position:158-358
               
               
               Cow position:chr2:82648687-82648911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:158-369
               
               
               Cow position:chr2:51226113-51226345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 170

               
               
               Conread position:158-381
               
               
               Cow position:chr2:39629950-39630195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr2:5152406-5152160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr2:6945213-6944967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr2:10207459-10207705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr2:14938834-14938588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr2:24422865-24423111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr2:30112385-30112615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):132, 57

               
               
               Conread position:158-382
               
               
               Cow position:chr2:40729652-40729406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr2:46529172-46528926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr2:50612644-50612890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr2:55162091-55162335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr2:55164142-55164388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-448
               
               
               Cow position:chr2:73187766-73187445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):64, 105

               
               
               Conread position:158-452
               
               
               Cow position:chr2:39936305-39935992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):64, 199

               
               
               Conread position:158-453
               
               
               Cow position:chr2:18674011-18673684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr2:22345182-22344855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):64, 275

               
               
               Conread position:158-453
               
               
               Cow position:chr2:60051305-60051632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-457
               
               
               Cow position:chr2:9219753-9220081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):23, 234

               
               
               Conread position:158-519
               
               
               Cow position:chr2:65716976-65717371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):65, 166

               
               
               Conread position:158-527
               
               
               Cow position:chr2:2084220-2084623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:158-528
               
               
               Cow position:chr2:41045703-41046104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:266
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-546
               
               
               Cow position:chr2:38206859-38207285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 225

               
               
               Conread position:158-548
               
               
               Cow position:chr2:362368-362789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:288
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:158-548
               
               
               Cow position:chr2:38659374-38659790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 17

               
               
               Conread position:158-551
               
               
               Cow position:chr2:43046607-43047037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:294
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-551
               
               
               Cow position:chr2:53182553-53182983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:296
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-573
               
               
               Cow position:chr2:74468829-74469288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:318
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):60, 343

               
               
               Conread position:158-579
               
               
               Cow position:chr2:10882599-10882134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:315
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr2:4833155-4833620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:310
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr2:38636149-38636614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:317
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):64, 113

               
               
               Conread position:158-580
               
               
               Cow position:chr2:72963197-72963651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 223

               
               
               Conread position:158-610
               
               
               Cow position:chr2:64531454-64530959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:332
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):64, 467

               
               
               Conread position:158-614
               
               
               Cow position:chr2:21606706-21606205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:333
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:158-614
               
               
               Cow position:chr2:84101506-84102010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:341
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-617
               
               
               Cow position:chr2:41009270-41009769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 313

               
               
               Conread position:158-635
               
               
               Cow position:chr2:208941-209461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:352
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):64, 450

               
               
               Conread position:158-635
               
               
               Cow position:chr2:67682948-67682423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:351
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):60, 343

               
               
               Conread position:158-645
               
               
               Cow position:chr2:15241022-15241533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:349
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):61, 138

               
               
               Conread position:158-690
               
               
               Cow position:chr2:86496811-86496233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:380
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):64, 306

               
               
               Conread position:158-692
               
               
               Cow position:chr2:17118914-17119501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 553

               
               
               Conread position:158-692
               
               
               Cow position:chr2:30380439-30379853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-766
               
               
               Cow position:chr2:18520658-18521311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 277

               
               
               Conread position:158-772
               
               
               Cow position:chr2:36909980-36910647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-807
               
               
               Cow position:chr2:4237384-4238080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 108

               
               
               Conread position:158-808
               
               
               Cow position:chr2:62735333-62734637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 586

               
               
               Conread position:158-811
               
               
               Cow position:chr2:11686140-11685459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 40

               
               
               Conread position:158-812
               
               
               Cow position:chr2:67417606-67418298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:324
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):64, 350

               
               
               Conread position:158-816
               
               
               Cow position:chr2:36047158-36047849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 382

               
               
               Conread position:158-819
               
               
               Cow position:chr2:28847736-28847024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 593

               
               
               Conread position:158-822
               
               
               Cow position:chr2:48850078-48850799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-823
               
               
               Cow position:chr2:4017455-4018136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 44

               
               
               Conread position:158-825
               
               
               Cow position:chr2:9714825-9714114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 91

               
               
               Conread position:158-825
               
               
               Cow position:chr2:11726537-11725821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 591

               
               
               Conread position:158-825
               
               
               Cow position:chr2:18350234-18350955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 597

               
               
               Conread position:158-825
               
               
               Cow position:chr2:29031986-29031308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 129

               
               
               Conread position:158-825
               
               
               Cow position:chr2:52621939-52621220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-829
               
               
               Cow position:chr2:10608632-10609347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 250

               
               
               Conread position:158-830
               
               
               Cow position:chr2:49300852-49301581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 37

               
               
               Conread position:158-831
               
               
               Cow position:chr2:2095645-2096367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 591

               
               
               Conread position:158-831
               
               
               Cow position:chr2:54726942-54727636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 59

               
               
               Conread position:158-834
               
               
               Cow position:chr2:2181111-2181835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 42

               
               
               Conread position:158-834
               
               
               Cow position:chr2:3623686-3622956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 336

               
               
               Conread position:158-834
               
               
               Cow position:chr2:3669224-3668496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-834
               
               
               Cow position:chr2:4804575-4805299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 275

               
               
               Conread position:158-834
               
               
               Cow position:chr2:5117099-5116383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 40

               
               
               Conread position:158-834
               
               
               Cow position:chr2:11813385-11814115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 345

               
               
               Conread position:158-834
               
               
               Cow position:chr2:12694508-12695243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 335

               
               
               Conread position:158-834
               
               
               Cow position:chr2:17265271-17265998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 593

               
               
               Conread position:158-834
               
               
               Cow position:chr2:24688844-24688115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 350

               
               
               Conread position:158-834
               
               
               Cow position:chr2:26906405-26905686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 589

               
               
               Conread position:158-834
               
               
               Cow position:chr2:29955921-29956630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 154

               
               
               Conread position:158-834
               
               
               Cow position:chr2:32659594-32658894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 124

               
               
               Conread position:158-834
               
               
               Cow position:chr2:33263214-33263920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 82

               
               
               Conread position:158-834
               
               
               Cow position:chr2:37325048-37324322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 5

               
               
               Conread position:158-834
               
               
               Cow position:chr2:37396543-37395815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 116

               
               
               Conread position:158-834
               
               
               Cow position:chr2:44094528-44093802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 380

               
               
               Conread position:158-834
               
               
               Cow position:chr2:47181584-47182315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 597

               
               
               Conread position:158-834
               
               
               Cow position:chr2:49630487-49629761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 382

               
               
               Conread position:158-834
               
               
               Cow position:chr2:53543103-53542375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 591

               
               
               Conread position:158-834
               
               
               Cow position:chr2:54655203-54655900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 63

               
               
               Conread position:158-834
               
               
               Cow position:chr2:62731688-62730961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 401

               
               
               Conread position:158-834
               
               
               Cow position:chr2:70669871-70669145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 366

               
               
               Conread position:158-834
               
               
               Cow position:chr2:74237501-74238228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 381

               
               
               Conread position:158-834
               
               
               Cow position:chr2:80161856-80162570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 401

               
               
               Conread position:159-382
               
               
               Cow position:chr2:48716890-48716645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:159-382
               
               
               Cow position:chr2:48721897-48721652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:159-409
               
               
               Cow position:chr2:38272946-38272668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:159-751
               
               
               Cow position:chr2:41954160-41953550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 518

               
               
               Conread position:159-805
               
               
               Cow position:chr2:77468053-77468724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 27

               
               
               Conread position:159-819
               
               
               Cow position:chr2:778291-778990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 388

               
               
               Conread position:159-830
               
               
               Cow position:chr2:4179954-4180674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 594

               
               
               Conread position:160-380
               
               
               Cow position:chr2:40248521-40248755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):63, 175

               
               
               Conread position:160-381
               
               
               Cow position:chr2:9079777-9080011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):62, 199

               
               
               Conread position:160-382
               
               
               Cow position:chr2:76985322-76985564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:160-410
               
               
               Cow position:chr2:32455297-32455574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:160-450
               
               
               Cow position:chr2:10468787-10468470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):62, 102

               
               
               Conread position:160-502
               
               
               Cow position:chr2:2688538-2688163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:266
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-523
               
               
               Cow position:chr2:31512182-31511795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):57, 197

               
               
               Conread position:160-535
               
               
               Cow position:chr2:16496963-16497360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):62, 320

               
               
               Conread position:160-548
               
               
               Cow position:chr2:50407253-50406849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 141

               
               
               Conread position:160-588
               
               
               Cow position:chr2:11962205-11961729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:320
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:160-633
               
               
               Cow position:chr2:16302076-16301562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:350
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):65, 101

               
               
               Conread position:160-644
               
               
               Cow position:chr2:9700686-9700154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-645
               
               
               Cow position:chr2:871087-871619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:345
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):61, 265

               
               
               Conread position:160-690
               
               
               Cow position:chr2:9186740-9187300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:377
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):55, 133

               
               
               Conread position:160-703
               
               
               Cow position:chr2:40312678-40312091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:392
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):60, 178

               
               
               Conread position:160-765
               
               
               Cow position:chr2:4931002-4931635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 211

               
               
               Conread position:160-767
               
               
               Cow position:chr2:10196117-10196779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:435
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):62, 502

               
               
               Conread position:160-776
               
               
               Cow position:chr2:64765754-64766405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:422
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):58, 182

               
               
               Conread position:160-795
               
               
               Cow position:chr2:32499481-32500157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 34

               
               
               Conread position:160-807
               
               
               Cow position:chr2:73992876-73992186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 126

               
               
               Conread position:160-810
               
               
               Cow position:chr2:26080660-26079979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 224

               
               
               Conread position:160-819
               
               
               Cow position:chr2:20869768-20870443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 27

               
               
               Conread position:160-819
               
               
               Cow position:chr2:28646464-28647175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 595

               
               
               Conread position:160-822
               
               
               Cow position:chr2:62674840-62675559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 330

               
               
               Conread position:160-831
               
               
               Cow position:chr2:20917032-20917732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 33

               
               
               Conread position:160-834
               
               
               Cow position:chr2:36983814-36983089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 591

               
               
               Conread position:160-834
               
               
               Cow position:chr2:46256637-46255939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:450
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):60, 38

               
               
               Conread position:160-834
               
               
               Cow position:chr2:49475063-49474336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 165

               
               
               Conread position:161-409
               
               
               Cow position:chr2:44986989-44987259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:161-451
               
               
               Cow position:chr2:30959292-30958972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):61, 80

               
               
               Conread position:161-528
               
               
               Cow position:chr2:27145948-27146349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:161-540
               
               
               Cow position:chr2:11705794-11705387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:277
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):63, 20

               
               
               Conread position:161-602
               
               
               Cow position:chr2:68422713-68422226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:161-834
               
               
               Cow position:chr2:45936585-45937286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 215

               
               
               Conread position:162-368
               
               
               Cow position:chr2:39854942-39854719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 18

               
               
               Conread position:162-387
               
               
               Cow position:chr2:29383720-29383965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:162-452
               
               
               Cow position:chr2:42360570-42360892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:162-527
               
               
               Cow position:chr2:944168-943788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):57, 165

               
               
               Conread position:162-834
               
               
               Cow position:chr2:33390543-33389869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 102

               
               
               Conread position:163-391
               
               
               Cow position:chr2:46302520-46302770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:163-825
               
               
               Cow position:chr2:10183073-10183784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 267

               
               
               Conread position:163-834
               
               
               Cow position:chr2:42667548-42668271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 555

               
               
               Conread position:164-480
               
               
               Cow position:chr2:36435398-36435072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):139, 58

               
               
               Conread position:164-533
               
               
               Cow position:chr2:28611699-28612083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):72, 39

               
               
               Conread position:164-548
               
               
               Cow position:chr2:46939844-46940248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:270
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):59, 242

               
               
               Conread position:164-580
               
               
               Cow position:chr2:30909653-30909198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 319

               
               
               Conread position:164-635
               
               
               Cow position:chr2:79977933-79978442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:344
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):58, 271

               
               
               Conread position:164-704
               
               
               Cow position:chr2:62819320-62819914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:391
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):64, 275

               
               
               Conread position:164-815
               
               
               Cow position:chr2:39116926-39116248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:433
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):159, 44

               
               
               Conread position:164-824
               
               
               Cow position:chr2:74861103-74860414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 114

               
               
               Conread position:164-834
               
               
               Cow position:chr2:576711-575991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 215

               
               
               Conread position:165-459
               
               
               Cow position:chr2:31705141-31705459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 144

               
               
               Conread position:165-621
               
               
               Cow position:chr2:13603511-13603015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 35

               
               
               Conread position:166-394
               
               
               Cow position:chr2:24593235-24593002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):117, 59

               
               
               Conread position:166-463
               
               
               Cow position:chr2:53850168-53849848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):56, 234

               
               
               Conread position:167-387
               
               
               Cow position:chr2:5980678-5980441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:167-410
               
               
               Cow position:chr2:16304693-16304419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):20, 212

               
               
               Conread position:169-573
               
               
               Cow position:chr2:11792455-11792015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:296
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):53, 300

               
               
               Conread position:169-819
               
               
               Cow position:chr2:12221142-12221832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 548

               
               
               Conread position:169-819
               
               
               Cow position:chr2:31456881-31456189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 368

               
               
               Conread position:170-480
               
               
               Cow position:chr2:36467540-36467220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):133, 52

               
               
               Conread position:170-825
               
               
               Cow position:chr2:43879042-43878349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 71

               
               
               Conread position:171-644
               
               
               Cow position:chr2:56830665-56831167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:342
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:173-721
               
               
               Cow position:chr2:4922898-4923481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:178-580
               
               
               Cow position:chr2:7506445-7506883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 278

               
               
               Conread position:181-517
               
               
               Cow position:chr2:38513130-38512760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 321

               
               
               Conread position:186-834
               
               
               Cow position:chr2:59410620-59411318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 275

               
               
               Conread position:187-764
               
               
               Cow position:chr2:13489910-13489342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:366
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):45, 35

               
               
               Conread position:187-834
               
               
               Cow position:chr2:2409710-2410406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 296

               
               
               Conread position:188-825
               
               
               Cow position:chr2:74389815-74390481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:415
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 183

               
               
               Conread position:189-522
               
               
               Cow position:chr2:50812480-50812116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):34, 347

               
               
               Conread position:189-528
               
               
               Cow position:chr2:1657426-1657059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 248

               
               
               Conread position:189-608
               
               
               Cow position:chr2:68489200-68489662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 74

               
               
               Conread position:189-819
               
               
               Cow position:chr2:54699654-54698981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 303

               
               
               Conread position:189-823
               
               
               Cow position:chr2:12184890-12184222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:189-834
               
               
               Cow position:chr2:382990-383684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 192

               
               
               Conread position:190-580
               
               
               Cow position:chr2:2558194-2558626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:294
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):33, 296

               
               
               Conread position:191-834
               
               
               Cow position:chr2:22133592-22134257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:433
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):35, 155

               
               
               Conread position:201-522
               
               
               Cow position:chr2:76560713-76560355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):22, 173

               
               
               Conread position:212-825
               
               
               Cow position:chr2:12331027-12330385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 423

               
               
               Conread position:220-834
               
               
               Cow position:chr2:39935982-39935363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):427, 485

               
               
               Conread position:221-580
               
               
               Cow position:chr2:36722135-36721747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):61, 20

               
               
               Conread position:221-644
               
               
               Cow position:chr2:33251528-33251999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:313
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):15, 34

               
               
               Conread position:221-814
               
               
               Cow position:chr2:41184109-41183480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 517

               
               
               Conread position:221-816
               
               
               Cow position:chr2:41162333-41161708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:415
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):15, 146

               
               
               Conread position:221-834
               
               
               Cow position:chr2:14207758-14208404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 210

               
               
               Conread position:221-834
               
               
               Cow position:chr2:35883376-35884038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 524

               
               
               Conread position:222-571
               
               
               Cow position:chr2:14825591-14825227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):14, 227

               
               
               Conread position:222-707
               
               
               Cow position:chr2:82895019-82895553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:358
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):14, 430

               
               
               Conread position:224-834
               
               
               Cow position:chr2:7370755-7370105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 423

               
               
               Conread position:235-442
               
               
               Cow position:chr2:39661752-39661971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):106, 56

               
               
               Conread position:235-522
               
               
               Cow position:chr2:21407540-21407239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):5, 55

               
               
               Conread position:235-831
               
               
               Cow position:chr2:25024186-25023536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 189

               
               
               Conread position:235-860
               
               
               Cow position:chr2:38487453-38486784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 508

               
               
               Conread position:236-741
               
               
               Cow position:chr2:15059927-15060438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:353
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):145, 33

               
               
               Conread position:241-834
               
               
               Cow position:chr2:39675685-39676325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 186

               
               
               Conread position:243-540
               
               
               Cow position:chr2:79966918-79967232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 243

               
               
               Conread position:245-808
               
               
               Cow position:chr2:78765712-78765115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 241

               
               
               Conread position:248-807
               
               
               Cow position:chr2:52654008-52653421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:375
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):13, 128

               
               
               Conread position:249-822
               
               
               Cow position:chr2:53663566-53662957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 40

               
               
               Conread position:252-834
               
               
               Cow position:chr2:55481172-55481779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 171

               
               
               Conread position:257-782
               
               
               Cow position:chr2:67743937-67743401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 10

               
               
               Conread position:258-577
               
               
               Cow position:chr2:36867511-36867851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):34, 159

               
               
               Conread position:258-742
               
               
               Cow position:chr2:27075651-27075148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 135

               
               
               Conread position:260-824
               
               
               Cow position:chr2:54716479-54715886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 134

               
               
               Conread position:262-807
               
               
               Cow position:chr2:31409853-31410420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 30

               
               
               Conread position:263-834
               
               
               Cow position:chr2:4917027-4917634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 473

               
               
               Conread position:268-828
               
               
               Cow position:chr2:36104507-36103912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 465

               
               
               Conread position:269-834
               
               
               Cow position:chr2:30924500-30923901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 249

               
               
               Conread position:270-807
               
               
               Cow position:chr2:11689399-11688838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:364
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):19, 88

               
               
               Conread position:276-815
               
               
               Cow position:chr2:15751326-15750745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:380
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):63, 346

               
               
               Conread position:277-811
               
               
               Cow position:chr2:37809512-37810068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:355
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):98, 68

               
               
               Conread position:288-834
               
               
               Cow position:chr2:19961330-19960779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 186

               
               
               Conread position:289-834
               
               
               Cow position:chr2:34502147-34501567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 446

               
               
               Conread position:290-523
               
               
               Cow position:chr2:86349302-86349053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):49, 178

               
               
               Conread position:290-793
               
               
               Cow position:chr2:56895499-56896019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:341
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):45, 116

               
               
               Conread position:290-834
               
               
               Cow position:chr2:43525845-43526408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 78

               
               
               Conread position:290-834
               
               
               Cow position:chr2:72692790-72692213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 443

               
               
               Conread position:290-834
               
               
               Cow position:chr2:80875345-80875927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 67

               
               
               Conread position:290-849
               
               
               Cow position:chr2:32432360-32432916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 49

               
               
               Conread position:291-562
               
               
               Cow position:chr2:63059040-63058756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:291-692
               
               
               Cow position:chr2:17807555-17807982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 125

               
               
               Conread position:291-834
               
               
               Cow position:chr2:9962057-9962635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 444

               
               
               Conread position:291-834
               
               
               Cow position:chr2:33091285-33090714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:377
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):45, 230

               
               
               Conread position:292-834
               
               
               Cow position:chr2:10123037-10123614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 443

               
               
               Conread position:293-825
               
               
               Cow position:chr2:5917286-5916732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 149

               
               
               Conread position:298-803
               
               
               Cow position:chr2:20879303-20879811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:348
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:298-825
               
               
               Cow position:chr2:15572062-15572621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 168

               
               
               Conread position:298-834
               
               
               Cow position:chr2:57054567-57053999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 265

               
               
               Conread position:307-834
               
               
               Cow position:chr2:6003838-6004400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 424

               
               
               Conread position:311-834
               
               
               Cow position:chr2:53332797-53332238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 427

               
               
               Conread position:315-833
               
               
               Cow position:chr2:34592559-34593090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 183

               
               
               Conread position:316-808
               
               
               Cow position:chr2:35303432-35302918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 141

               
               
               Conread position:317-522
               
               
               Cow position:chr2:30815747-30815965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:336-685
               
               
               Cow position:chr2:10692420-10692780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):47, 150

               
               
               Conread position:336-833
               
               
               Cow position:chr2:62050988-62051500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 26

               
               
               Conread position:336-834
               
               
               Cow position:chr2:1693872-1693347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 291

               
               
               Conread position:336-834
               
               
               Cow position:chr2:25979023-25978495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 394

               
               
               Conread position:339-539
               
               
               Cow position:chr2:69648129-69648346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:340-643
               
               
               Cow position:chr2:83525405-83525099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):41, 140

               
               
               Conread position:340-767
               
               
               Cow position:chr2:20977993-20977542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:314
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):45, 118

               
               
               Conread position:341-637
               
               
               Cow position:chr2:53175283-53174965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):37, 301

               
               
               Conread position:341-833
               
               
               Cow position:chr2:75193951-75193461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):292, 223

               
               
               Conread position:342-834
               
               
               Cow position:chr2:39119560-39119037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 389

               
               
               Conread position:344-809
               
               
               Cow position:chr2:48360903-48360395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 383

               
               
               Conread position:345-815
               
               
               Cow position:chr2:6291856-6291374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:321
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):44, 159

               
               
               Conread position:345-825
               
               
               Cow position:chr2:35440885-35440405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:322
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):40, 169

               
               
               Conread position:350-831
               
               
               Cow position:chr2:20351028-20351517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 71

               
               
               Conread position:355-822
               
               
               Cow position:chr2:43756700-43757195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 40

               
               
               Conread position:364-834
               
               
               Cow position:chr2:47035468-47035969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 366

               
               
               Conread position:373-825
               
               
               Cow position:chr2:12199826-12200302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 198

               
               
               Conread position:377-835
               
               
               Cow position:chr2:49451580-49452054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 74

               
               
               Conread position:380-834
               
               
               Cow position:chr2:58564843-58565288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 206

               
               
               Conread position:384-834
               
               
               Cow position:chr2:6965831-6965362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:307
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):46, 28

               
               
               Conread position:385-834
               
               
               Cow position:chr2:28655505-28655034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:313
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):26, 127

               
               
               Conread position:386-834
               
               
               Cow position:chr2:39424837-39424367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 241

               
               
               Conread position:407-833
               
               
               Cow position:chr2:6540897-6540449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 110

               
               
               Conread position:418-825
               
               
               Cow position:chr2:23642500-23642922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 16

               
               
               Conread position:421-824
               
               
               Cow position:chr2:1844224-1844626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:278
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):104, 12

               
               
               Conread position:421-826
               
               
               Cow position:chr2:72790706-72791132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):9, 294

               
               
               Conread position:421-834
               
               
               Cow position:chr2:31645107-31644670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 300

               
               
               Conread position:421-834
               
               
               Cow position:chr2:41764129-41763702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 223

               
               
               Conread position:421-834
               
               
               Cow position:chr2:63000795-63000360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-843
               
               
               Cow position:chr2:20278782-20279226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:422-764
               
               
               Cow position:chr2:44987552-44987917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):8, 262

               
               
               Conread position:423-834
               
               
               Cow position:chr2:25591135-25590707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:284
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):7, 296

               
               
               Conread position:423-834
               
               
               Cow position:chr2:43877582-43877158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 27

               
               
               Conread position:427-825
               
               
               Cow position:chr2:16306927-16306517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 27

               
               
               Conread position:427-834
               
               
               Cow position:chr2:54346970-54346552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:289
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):38, 27

               
               
               Conread position:427-834
               
               
               Cow position:chr2:70259990-70259564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 16

               
               
               Conread position:428-834
               
               
               Cow position:chr2:51024320-51024728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 116

               
               
               Conread position:438-807
               
               
               Cow position:chr2:10656995-10657373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 129

               
               
               Conread position:438-834
               
               
               Cow position:chr2:45913826-45914231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 51

               
               
               Conread position:439-825
               
               
               Cow position:chr2:10468448-10468041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):37, 284

               
               
               Conread position:465-834
               
               
               Cow position:chr2:25756151-25756547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):14, 258

               
               
               Conread position:476-824
               
               
               Cow position:chr2:34576625-34576987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):51, 239

               
               
               Conread position:488-825
               
               
               Cow position:chr2:71164719-71165073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):37, 228

               
               
               Conread position:489-797
               
               
               Cow position:chr2:4224873-4224552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):36, 16

               
               
               Conread position:491-748
               
               
               Cow position:chr2:22682082-22682358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):34, 222

               
               
               Conread position:491-764
               
               
               Cow position:chr2:66686211-66686503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-771
               
               
               Cow position:chr2:15885137-15885436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-801
               
               
               Cow position:chr2:42363607-42363931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 225

               
               
               Conread position:491-806
               
               
               Cow position:chr2:2772522-2772190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):34, 219

               
               
               Conread position:491-836
               
               
               Cow position:chr2:66901521-66901893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):21, 234

               
               
               Conread position:492-822
               
               
               Cow position:chr2:16310735-16310403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 74

               
               
               Conread position:493-822
               
               
               Cow position:chr2:44229959-44230304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):32, 95

               
               
               Conread position:494-849
               
               
               Cow position:chr2:78749081-78748709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):36, 8

               
               
               Conread position:496-767
               
               
               Cow position:chr2:16497370-16497647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:498-807
               
               
               Cow position:chr2:16304373-16304057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:503-834
               
               
               Cow position:chr2:10739065-10739410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):22, 212

               
               
               Conread position:505-747
               
               
               Cow position:chr2:46351303-46351554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:505-834
               
               
               Cow position:chr2:38512115-38512452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:506-834
               
               
               Cow position:chr2:80288927-80289267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:245
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):9, 28

               
               
               Conread position:507-829
               
               
               Cow position:chr2:15963905-15964234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):8, 28

               
               
               Conread position:508-834
               
               
               Cow position:chr2:14883017-14882675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 208

               
               
               Conread position:513-831
               
               
               Cow position:chr2:73780057-73780381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:514-786
               
               
               Cow position:chr2:311724-311996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:514-825
               
               
               Cow position:chr2:52497313-52497631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:519-831
               
               
               Cow position:chr2:46498007-46497695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):117, 15

               
               
               Conread position:521-831
               
               
               Cow position:chr2:40540276-40539962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 14

               
               
               Conread position:527-830
               
               
               Cow position:chr2:1433110-1433424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):34, 26

               
               
               Conread position:530-825
               
               
               Cow position:chr2:34619591-34619288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:545-825
               
               
               Cow position:chr2:16321656-16321373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 68

               
               
               Conread position:551-825
               
               
               Cow position:chr2:31705746-31706036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:566-825
               
               
               Cow position:chr2:5979714-5979462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):46, 28

               
               
               Conread position:569-834
               
               
               Cow position:chr2:29968691-29968421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-834
               
               
               Cow position:chr2:53183471-53183201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 138

               
               
               Conread position:571-825
               
               
               Cow position:chr2:65935544-65935802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):64, 135

               
               
               Conread position:572-834
               
               
               Cow position:chr2:74469355-74469622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 99

               
               
               Conread position:579-822
               
               
               Cow position:chr2:6065377-6065607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):61, 84

               
               
               Conread position:587-819
               
               
               Cow position:chr2:58472964-58473193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):5, 115

               
               
               Conread position:591-834
               
               
               Cow position:chr2:1993117-1992870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):57, 116

               
               
               Conread position:591-834
               
               
               Cow position:chr2:4833919-4834167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):55, 114

               
               
               Conread position:591-834
               
               
               Cow position:chr2:68381750-68381503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:601-806
               
               
               Cow position:chr2:11705281-11705071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 101

               
               
               Conread position:602-825
               
               
               Cow position:chr2:28725247-28725026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):18, 46

               
               
               Conread position:609-834
               
               
               Cow position:chr2:81259792-81259562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):39, 85

               
               
               Conread position:616-825
               
               
               Cow position:chr2:31417750-31417542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):46, 10

               
               
               Conread position:619-808
               
               
               Cow position:chr2:36075178-36075364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 83

               
               
               Conread position:619-834
               
               
               Cow position:chr2:32861973-32862187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):29, 57

               
               
               Conread position:645-834
               
               
               Cow position:chr2:21177690-21177502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:645-834
               
               
               Cow position:chr2:50406598-50406410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):70, 51

               
               
               Conread position:661-808
               
               
               Cow position:chr2:71470027-71470172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:666-811
               
               
               Cow position:chr2:44497178-44497318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr2:245078-245244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:667-794
               
               
               Cow position:chr2:63057317-63057192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:667-818
               
               
               Cow position:chr2:40249219-40249067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):100, 34

               
               
               Conread position:667-834
               
               
               Cow position:chr2:9910594-9910428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:667-834
               
               
               Cow position:chr2:46726329-46726163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 24

               
               
               Conread position:668-832
               
               
               Cow position:chr2:30941178-30941013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):49, 28

               
               
               Conread position:680-801
               
               
               Cow position:chr2:18062824-18062944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:680-824
               
               
               Cow position:chr2:42330279-42330420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:680-834
               
               
               Cow position:chr2:45212098-45212250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:684-825
               
               
               Cow position:chr2:5284934-5285074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:691-834
               
               
               Cow position:chr2:24927991-24927848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:696-818
               
               
               Cow position:chr2:1141213-1141093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:697-815
               
               
               Cow position:chr2:5299220-5299103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:697-834
               
               
               Cow position:chr2:13602795-13602658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr2:41046681-41046817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:700-822
               
               
               Cow position:chr2:5902427-5902548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:705-831
               
               
               Cow position:chr2:2085305-2085431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:707-834
               
               
               Cow position:chr2:30379574-30379447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:712-834
               
               
               Cow position:chr2:44478162-44478040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:716-825
               
               
               Cow position:chr2:52160325-52160434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:731-834
               
               
               Cow position:chr2:17807996-17808099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:84
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-547
               
               
               Cow position:chr20:6096840-6097408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 67

               
               
               Conread position:54-293
               
               
               Cow position:chr20:35064517-35064271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):168, 19

               
               
               Conread position:62-387
               
               
               Cow position:chr20:27339631-27339272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):13, 46

               
               
               Conread position:62-819
               
               
               Cow position:chr20:31221051-31220280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 31

               
               
               Conread position:73-293
               
               
               Cow position:chr20:16107273-16107039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):50, 34

               
               
               Conread position:73-337
               
               
               Cow position:chr20:26826078-26826374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):76, 38

               
               
               Conread position:73-337
               
               
               Cow position:chr20:34776672-34776381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):50, 34

               
               
               Conread position:73-376
               
               
               Cow position:chr20:20353370-20353697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:73-382
               
               
               Cow position:chr20:1761578-1761232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:73-387
               
               
               Cow position:chr20:12552784-12553126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):71, 34

               
               
               Conread position:73-398
               
               
               Cow position:chr20:6423518-6423169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):68, 34

               
               
               Conread position:73-410
               
               
               Cow position:chr20:16584783-16584405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):71, 34

               
               
               Conread position:73-410
               
               
               Cow position:chr20:39391357-39391738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-432
               
               
               Cow position:chr20:9433156-9432754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):28, 39

               
               
               Conread position:73-517
               
               
               Cow position:chr20:11453816-11454309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 34

               
               
               Conread position:73-607
               
               
               Cow position:chr20:37272051-37271454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:405
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):76, 31

               
               
               Conread position:73-717
               
               
               Cow position:chr20:4205426-4204740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-824
               
               
               Cow position:chr20:24399081-24399901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:824
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 34

               
               
               Conread position:73-825
               
               
               Cow position:chr20:30689656-30688838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:825
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:73-826
               
               
               Cow position:chr20:21398586-21397783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:812
               
               
               Alignm identity:537
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:74-283
               
               
               Cow position:chr20:6501345-6501121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):20, 38

               
               
               Conread position:74-446
               
               
               Cow position:chr20:13619010-13619425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):62, 33

               
               
               Conread position:74-727
               
               
               Cow position:chr20:14210605-14211317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 33

               
               
               Conread position:76-768
               
               
               Cow position:chr20:15527519-15526765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:760
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 31

               
               
               Conread position:82-540
               
               
               Cow position:chr20:14326846-14327351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:342
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:122-382
               
               
               Cow position:chr20:18168862-18168581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:122-580
               
               
               Cow position:chr20:5958423-5958928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:342
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):18, 274

               
               
               Conread position:122-706
               
               
               Cow position:chr20:9536618-9535987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:413
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:122-834
               
               
               Cow position:chr20:28725481-28724710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:527
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 264

               
               
               Conread position:123-834
               
               
               Cow position:chr20:15240324-15241055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 134

               
               
               Conread position:128-825
               
               
               Cow position:chr20:31846105-31846869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:768
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 76

               
               
               Conread position:139-825
               
               
               Cow position:chr20:22209325-22208585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 617

               
               
               Conread position:142-375
               
               
               Cow position:chr20:10913878-10914133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 14

               
               
               Conread position:142-467
               
               
               Cow position:chr20:31261195-31260850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 14

               
               
               Conread position:142-831
               
               
               Cow position:chr20:8446110-8445370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:143-403
               
               
               Cow position:chr20:12421181-12421458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:143-404
               
               
               Cow position:chr20:10538332-10538048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-453
               
               
               Cow position:chr20:32451658-32451999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:143-508
               
               
               Cow position:chr20:19146325-19145931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:143-522
               
               
               Cow position:chr20:28165532-28165133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-527
               
               
               Cow position:chr20:6055026-6055445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:143-528
               
               
               Cow position:chr20:7081119-7081538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:286
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-548
               
               
               Cow position:chr20:14877755-14877315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:143-576
               
               
               Cow position:chr20:18321873-18322331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-580
               
               
               Cow position:chr20:7994843-7995326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-708
               
               
               Cow position:chr20:22185325-22185931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:401
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-720
               
               
               Cow position:chr20:38001174-38000558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-736
               
               
               Cow position:chr20:13303602-13304247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:398
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-754
               
               
               Cow position:chr20:15295714-15295054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-757
               
               
               Cow position:chr20:8870627-8871223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:395
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-795
               
               
               Cow position:chr20:5503044-5503754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-808
               
               
               Cow position:chr20:12333365-12332656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:143-815
               
               
               Cow position:chr20:15089676-15090402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr20:6135294-6136026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-830
               
               
               Cow position:chr20:7597165-7597898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-831
               
               
               Cow position:chr20:12434703-12435438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-831
               
               
               Cow position:chr20:19845458-19844736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr20:5538841-5538136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr20:6258598-6259339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:143-834
               
               
               Cow position:chr20:16558835-16559587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:756
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr20:25658332-25659067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:543
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr20:30384549-30385291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-835
               
               
               Cow position:chr20:13653648-13654381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:144-450
               
               
               Cow position:chr20:32938985-32938652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):78, 19

               
               
               Conread position:144-462
               
               
               Cow position:chr20:31000887-31000546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):79, 12

               
               
               Conread position:144-540
               
               
               Cow position:chr20:42254360-42254770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 15

               
               
               Conread position:144-644
               
               
               Cow position:chr20:41110732-41111271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:361
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):81, 12

               
               
               Conread position:144-741
               
               
               Cow position:chr20:37154270-37154923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 15

               
               
               Conread position:144-808
               
               
               Cow position:chr20:12567631-12568336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-813
               
               
               Cow position:chr20:16516020-16515326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 447

               
               
               Conread position:144-831
               
               
               Cow position:chr20:18490644-18489903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:145-329
               
               
               Cow position:chr20:34968696-34968495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:145-337
               
               
               Cow position:chr20:21925550-21925758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):70, 11

               
               
               Conread position:145-455
               
               
               Cow position:chr20:40781434-40781092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):77, 7

               
               
               Conread position:145-644
               
               
               Cow position:chr20:22221914-22222455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:360
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):74, 14

               
               
               Conread position:145-744
               
               
               Cow position:chr20:30479804-30479153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-825
               
               
               Cow position:chr20:13766577-13765856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 18

               
               
               Conread position:145-834
               
               
               Cow position:chr20:826472-825734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:146-832
               
               
               Cow position:chr20:9411041-9410320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 161

               
               
               Conread position:147-382
               
               
               Cow position:chr20:40058198-40057948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 92

               
               
               Conread position:147-387
               
               
               Cow position:chr20:10760030-10760292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-442
               
               
               Cow position:chr20:12996559-12996876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 72

               
               
               Conread position:147-449
               
               
               Cow position:chr20:12826784-12827117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-580
               
               
               Cow position:chr20:23802845-23802367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:325
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-645
               
               
               Cow position:chr20:15780515-15781037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:356
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:147-712
               
               
               Cow position:chr20:9007141-9007720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:391
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):12, 288

               
               
               Conread position:147-790
               
               
               Cow position:chr20:24439866-24439181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:437
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):12, 301

               
               
               Conread position:147-802
               
               
               Cow position:chr20:35158896-35159596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 347

               
               
               Conread position:147-819
               
               
               Cow position:chr20:27877178-27876450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 227

               
               
               Conread position:147-822
               
               
               Cow position:chr20:7568306-7569000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 102

               
               
               Conread position:147-822
               
               
               Cow position:chr20:7592792-7593487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 102

               
               
               Conread position:147-824
               
               
               Cow position:chr20:28295011-28294276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 276

               
               
               Conread position:147-829
               
               
               Cow position:chr20:17657538-17658272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 454

               
               
               Conread position:147-834
               
               
               Cow position:chr20:36418041-36418763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 72

               
               
               Conread position:148-393
               
               
               Cow position:chr20:16941955-16942213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:148-751
               
               
               Cow position:chr20:6550304-6550961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 572

               
               
               Conread position:148-825
               
               
               Cow position:chr20:28560200-28560921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 361

               
               
               Conread position:148-834
               
               
               Cow position:chr20:5077649-5076942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 266

               
               
               Conread position:148-834
               
               
               Cow position:chr20:9339709-9338976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 437

               
               
               Conread position:148-834
               
               
               Cow position:chr20:13955321-13954586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 21

               
               
               Conread position:150-312
               
               
               Cow position:chr20:14539837-14539666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 143

               
               
               Conread position:150-359
               
               
               Cow position:chr20:10288372-10288138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:150-834
               
               
               Cow position:chr20:3782012-3782750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:540
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 8

               
               
               Conread position:150-834
               
               
               Cow position:chr20:28443663-28444394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 8

               
               
               Conread position:150-834
               
               
               Cow position:chr20:32084756-32085504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:764
               
               
               Alignm identity:528
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 11

               
               
               Conread position:151-831
               
               
               Cow position:chr20:30777391-30776675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 164

               
               
               Conread position:153-828
               
               
               Cow position:chr20:10035062-10035765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 304

               
               
               Conread position:157-382
               
               
               Cow position:chr20:1024569-1024816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:157-834
               
               
               Cow position:chr20:754125-753392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 597

               
               
               Conread position:158-372
               
               
               Cow position:chr20:17863807-17863572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 220

               
               
               Conread position:158-382
               
               
               Cow position:chr20:18651292-18651046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr20:22274426-22274672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr20:35073065-35072819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr20:38956395-38956640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):64, 184

               
               
               Conread position:158-382
               
               
               Cow position:chr20:40504039-40504285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-387
               
               
               Cow position:chr20:2881166-2881416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):64, 44

               
               
               Conread position:158-410
               
               
               Cow position:chr20:30736960-30737239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-452
               
               
               Cow position:chr20:7225848-7225526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:158-452
               
               
               Cow position:chr20:31784630-31784956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr20:28324161-28323834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr20:36310820-36311147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:158-467
               
               
               Cow position:chr20:19441602-19441268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):64, 277

               
               
               Conread position:158-469
               
               
               Cow position:chr20:40423651-40423987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:245
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):66, 83

               
               
               Conread position:158-481
               
               
               Cow position:chr20:10099806-10099451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-519
               
               
               Cow position:chr20:29284925-29285320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-540
               
               
               Cow position:chr20:33731428-33731019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:281
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):64, 155

               
               
               Conread position:158-553
               
               
               Cow position:chr20:34458591-34459023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:295
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:158-645
               
               
               Cow position:chr20:9223535-9223000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:357
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-678
               
               
               Cow position:chr20:12176807-12177381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-736
               
               
               Cow position:chr20:29370737-29371366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 571

               
               
               Conread position:158-764
               
               
               Cow position:chr20:28956259-28956927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 601

               
               
               Conread position:158-775
               
               
               Cow position:chr20:775340-774671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 43

               
               
               Conread position:158-801
               
               
               Cow position:chr20:14512374-14511685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 587

               
               
               Conread position:158-803
               
               
               Cow position:chr20:22049049-22048351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-822
               
               
               Cow position:chr20:8970226-8970926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 29

               
               
               Conread position:158-822
               
               
               Cow position:chr20:30147114-30146401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 307

               
               
               Conread position:158-825
               
               
               Cow position:chr20:10405378-10404665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 382

               
               
               Conread position:158-831
               
               
               Cow position:chr20:14866707-14867426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 331

               
               
               Conread position:158-834
               
               
               Cow position:chr20:13505899-13506604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 40

               
               
               Conread position:158-834
               
               
               Cow position:chr20:22060495-22061223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 583

               
               
               Conread position:158-834
               
               
               Cow position:chr20:24567589-24568315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 318

               
               
               Conread position:158-834
               
               
               Cow position:chr20:31505016-31504284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 598

               
               
               Conread position:158-834
               
               
               Cow position:chr20:35094206-35093494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 154

               
               
               Conread position:159-375
               
               
               Cow position:chr20:21371528-21371294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:159-528
               
               
               Cow position:chr20:13501330-13500942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 154

               
               
               Conread position:159-579
               
               
               Cow position:chr20:34597677-34598137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:159-834
               
               
               Cow position:chr20:21720218-21719512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 127

               
               
               Conread position:160-398
               
               
               Cow position:chr20:33180796-33181050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 236

               
               
               Conread position:160-450
               
               
               Cow position:chr20:14760273-14760593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 173

               
               
               Conread position:160-453
               
               
               Cow position:chr20:35128644-35128319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):62, 14

               
               
               Conread position:160-480
               
               
               Cow position:chr20:22006897-22006554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):62, 102

               
               
               Conread position:160-503
               
               
               Cow position:chr20:16526979-16526601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:256
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):59, 46

               
               
               Conread position:160-534
               
               
               Cow position:chr20:14836866-14836460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:278
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):62, 400

               
               
               Conread position:160-539
               
               
               Cow position:chr20:5575941-5575557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):71, 33

               
               
               Conread position:160-544
               
               
               Cow position:chr20:26076227-26075816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:280
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:160-581
               
               
               Cow position:chr20:17668424-17667968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 81

               
               
               Conread position:160-645
               
               
               Cow position:chr20:26052672-26053205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:355
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-691
               
               
               Cow position:chr20:13660670-13661249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:375
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):47, 553

               
               
               Conread position:160-695
               
               
               Cow position:chr20:22211646-22211062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:372
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 555

               
               
               Conread position:160-794
               
               
               Cow position:chr20:10686403-10685728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 125

               
               
               Conread position:160-824
               
               
               Cow position:chr20:20731924-20731219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 37

               
               
               Conread position:160-827
               
               
               Cow position:chr20:19364215-19364909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 72

               
               
               Conread position:160-833
               
               
               Cow position:chr20:13817306-13816581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:469
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):56, 87

               
               
               Conread position:160-834
               
               
               Cow position:chr20:5795447-5794728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:454
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):63, 146

               
               
               Conread position:160-834
               
               
               Cow position:chr20:15117487-15116764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 108

               
               
               Conread position:160-834
               
               
               Cow position:chr20:23465973-23466696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 591

               
               
               Conread position:161-387
               
               
               Cow position:chr20:9987821-9987581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):64, 46

               
               
               Conread position:161-548
               
               
               Cow position:chr20:15235280-15234887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 71

               
               
               Conread position:161-580
               
               
               Cow position:chr20:20935463-20935913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:313
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):66, 321

               
               
               Conread position:164-409
               
               
               Cow position:chr20:27978299-27978560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):55, 98

               
               
               Conread position:164-699
               
               
               Cow position:chr20:9707453-9708041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:393
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):48, 281

               
               
               Conread position:167-462
               
               
               Cow position:chr20:13574883-13575198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):22, 284

               
               
               Conread position:167-611
               
               
               Cow position:chr20:28113653-28113172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:169-548
               
               
               Cow position:chr20:28822550-28822962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:275
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):53, 105

               
               
               Conread position:169-645
               
               
               Cow position:chr20:19155494-19156009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 435

               
               
               Conread position:169-822
               
               
               Cow position:chr20:25330492-25331184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:443
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):53, 313

               
               
               Conread position:170-508
               
               
               Cow position:chr20:10838783-10839157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:253
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:170-795
               
               
               Cow position:chr20:13325758-13325103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 70

               
               
               Conread position:171-463
               
               
               Cow position:chr20:17845381-17845070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):54, 235

               
               
               Conread position:174-834
               
               
               Cow position:chr20:14924975-14925688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 579

               
               
               Conread position:185-807
               
               
               Cow position:chr20:38654226-38654874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:412
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):53, 32

               
               
               Conread position:189-470
               
               
               Cow position:chr20:29843943-29843647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):36, 90

               
               
               Conread position:189-782
               
               
               Cow position:chr20:24903894-24904535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 146

               
               
               Conread position:191-834
               
               
               Cow position:chr20:7512291-7512977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 548

               
               
               Conread position:192-400
               
               
               Cow position:chr20:8280840-8281067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:192-557
               
               
               Cow position:chr20:35112678-35112278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:268
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):38, 386

               
               
               Conread position:198-768
               
               
               Cow position:chr20:32352215-32351622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 33

               
               
               Conread position:201-832
               
               
               Cow position:chr20:8099408-8098748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 124

               
               
               Conread position:208-467
               
               
               Cow position:chr20:35036755-35037038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:208-825
               
               
               Cow position:chr20:30431904-30431235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 419

               
               
               Conread position:208-885
               
               
               Cow position:chr20:20439344-20440068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 538

               
               
               Conread position:212-546
               
               
               Cow position:chr20:9511197-9511541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):24, 190

               
               
               Conread position:221-824
               
               
               Cow position:chr20:9997148-9996496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 523

               
               
               Conread position:221-825
               
               
               Cow position:chr20:10921314-10921958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 319

               
               
               Conread position:222-786
               
               
               Cow position:chr20:28887970-28887378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 133

               
               
               Conread position:225-511
               
               
               Cow position:chr20:23107011-23106701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 145

               
               
               Conread position:227-831
               
               
               Cow position:chr20:10494795-10494156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 293

               
               
               Conread position:235-644
               
               
               Cow position:chr20:9589370-9588925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:299
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):51, 32

               
               
               Conread position:242-555
               
               
               Cow position:chr20:25856753-25856423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 217

               
               
               Conread position:243-616
               
               
               Cow position:chr20:12155783-12156178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 159

               
               
               Conread position:257-801
               
               
               Cow position:chr20:15068383-15067804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:388
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):78, 25

               
               
               Conread position:260-766
               
               
               Cow position:chr20:19017850-19018382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 40

               
               
               Conread position:260-828
               
               
               Cow position:chr20:6477053-6476479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 31

               
               
               Conread position:267-825
               
               
               Cow position:chr20:6239583-6240170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 204

               
               
               Conread position:269-822
               
               
               Cow position:chr20:33295397-33295981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:358
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):76, 449

               
               
               Conread position:277-834
               
               
               Cow position:chr20:13789608-13789062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:362
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):64, 139

               
               
               Conread position:280-806
               
               
               Cow position:chr20:12048022-12047479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 142

               
               
               Conread position:289-833
               
               
               Cow position:chr20:27993991-27994580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 413

               
               
               Conread position:290-755
               
               
               Cow position:chr20:32164573-32165066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:332
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):46, 315

               
               
               Conread position:290-765
               
               
               Cow position:chr20:8349575-8350074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:322
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):52, 185

               
               
               Conread position:290-834
               
               
               Cow position:chr20:25988282-25987720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:373
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):55, 74

               
               
               Conread position:291-834
               
               
               Cow position:chr20:18092370-18092947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 73

               
               
               Conread position:292-579
               
               
               Cow position:chr20:27000026-26999714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:292-781
               
               
               Cow position:chr20:18608805-18608297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:326
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):47, 127

               
               
               Conread position:293-707
               
               
               Cow position:chr20:5269504-5269947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:308
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):48, 168

               
               
               Conread position:311-645
               
               
               Cow position:chr20:26738289-26737925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:311-825
               
               
               Cow position:chr20:16106960-16106411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 424

               
               
               Conread position:311-825
               
               
               Cow position:chr20:34231358-34231893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 237

               
               
               Conread position:315-823
               
               
               Cow position:chr20:28483331-28482806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:345
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):24, 49

               
               
               Conread position:336-834
               
               
               Cow position:chr20:5085854-5086383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 395

               
               
               Conread position:341-762
               
               
               Cow position:chr20:14672814-14672364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:341-766
               
               
               Cow position:chr20:30462274-30461827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:300
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):22, 176

               
               
               Conread position:342-834
               
               
               Cow position:chr20:34968460-34967937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 356

               
               
               Conread position:344-809
               
               
               Cow position:chr20:12685107-12685604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:320
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:345-644
               
               
               Cow position:chr20:6053878-6054206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 130

               
               
               Conread position:345-809
               
               
               Cow position:chr20:35020385-35019900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:320
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):33, 65

               
               
               Conread position:345-834
               
               
               Cow position:chr20:3808299-3808815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 386

               
               
               Conread position:345-834
               
               
               Cow position:chr20:30579337-30578817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 119

               
               
               Conread position:348-834
               
               
               Cow position:chr20:34643480-34642964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 129

               
               
               Conread position:374-766
               
               
               Cow position:chr20:39284600-39284203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:284
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):41, 78

               
               
               Conread position:408-815
               
               
               Cow position:chr20:6500274-6500720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:308
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):15, 65

               
               
               Conread position:414-541
               
               
               Cow position:chr20:22064681-22064816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:414-806
               
               
               Cow position:chr20:7810445-7810858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 305

               
               
               Conread position:414-818
               
               
               Cow position:chr20:20983142-20982724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):60, 255

               
               
               Conread position:421-720
               
               
               Cow position:chr20:32639400-32639077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):9, 299

               
               
               Conread position:421-804
               
               
               Cow position:chr20:10790843-10790439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:282
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:421-815
               
               
               Cow position:chr20:20092688-20092272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 298

               
               
               Conread position:421-815
               
               
               Cow position:chr20:30737663-30737260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):9, 55

               
               
               Conread position:421-825
               
               
               Cow position:chr20:14741575-14741149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 301

               
               
               Conread position:421-825
               
               
               Cow position:chr20:39234620-39234194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr20:38957527-38957092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 301

               
               
               Conread position:425-825
               
               
               Cow position:chr20:25845240-25845660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 297

               
               
               Conread position:428-834
               
               
               Cow position:chr20:3676997-3677406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:267
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 91

               
               
               Conread position:430-781
               
               
               Cow position:chr20:12996885-12997260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):57, 14

               
               
               Conread position:431-834
               
               
               Cow position:chr20:33181120-33181529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:281
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):43, 286

               
               
               Conread position:434-834
               
               
               Cow position:chr20:14721005-14721421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 11

               
               
               Conread position:436-619
               
               
               Cow position:chr20:3510229-3510031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:473-825
               
               
               Cow position:chr20:28034531-28034892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):52, 208

               
               
               Conread position:488-833
               
               
               Cow position:chr20:42923871-42923512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 24

               
               
               Conread position:490-834
               
               
               Cow position:chr20:19425509-19425145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:254
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):34, 122

               
               
               Conread position:491-809
               
               
               Cow position:chr20:28246934-28247271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-818
               
               
               Cow position:chr20:26799968-26800314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-822
               
               
               Cow position:chr20:23804564-23804913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 230

               
               
               Conread position:491-825
               
               
               Cow position:chr20:35127985-35127634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):34, 122

               
               
               Conread position:491-834
               
               
               Cow position:chr20:19306069-19306431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr20:21015700-21016061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 223

               
               
               Conread position:491-834
               
               
               Cow position:chr20:33597648-33598010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:492-829
               
               
               Cow position:chr20:31785066-31785413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 62

               
               
               Conread position:492-834
               
               
               Cow position:chr20:19441223-19440870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):33, 221

               
               
               Conread position:494-819
               
               
               Cow position:chr20:15799647-15799991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 225

               
               
               Conread position:505-736
               
               
               Cow position:chr20:14745903-14745665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:505-834
               
               
               Cow position:chr20:24542717-24542380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:508-822
               
               
               Cow position:chr20:2016525-2016841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):62, 27

               
               
               Conread position:514-807
               
               
               Cow position:chr20:1534259-1534549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):110, 21

               
               
               Conread position:514-825
               
               
               Cow position:chr20:35132289-35131972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:533-825
               
               
               Cow position:chr20:27344721-27345021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):39, 15

               
               
               Conread position:538-834
               
               
               Cow position:chr20:35107927-35108233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):14, 172

               
               
               Conread position:545-823
               
               
               Cow position:chr20:37168976-37169261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):28, 76

               
               
               Conread position:545-834
               
               
               Cow position:chr20:42085785-42085487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 164

               
               
               Conread position:569-811
               
               
               Cow position:chr20:20352126-20352365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):98, 74

               
               
               Conread position:569-822
               
               
               Cow position:chr20:35143678-35143937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):71, 130

               
               
               Conread position:569-823
               
               
               Cow position:chr20:869790-870051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):23, 17

               
               
               Conread position:569-825
               
               
               Cow position:chr20:13677519-13677761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:569-833
               
               
               Cow position:chr20:14876506-14876232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 129

               
               
               Conread position:569-834
               
               
               Cow position:chr20:11720001-11719732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):79, 135

               
               
               Conread position:569-834
               
               
               Cow position:chr20:34459088-34459358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):78, 40

               
               
               Conread position:570-693
               
               
               Cow position:chr20:14875734-14875610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:571-834
               
               
               Cow position:chr20:16189519-16189787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):76, 134

               
               
               Conread position:571-834
               
               
               Cow position:chr20:23392790-23393058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):76, 134

               
               
               Conread position:579-834
               
               
               Cow position:chr20:28164256-28163997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):58, 130

               
               
               Conread position:581-811
               
               
               Cow position:chr20:10062767-10063001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):66, 120

               
               
               Conread position:591-834
               
               
               Cow position:chr20:40007453-40007701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:592-825
               
               
               Cow position:chr20:20938843-20939080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):49, 109

               
               
               Conread position:592-834
               
               
               Cow position:chr20:37271288-37271040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):54, 110

               
               
               Conread position:608-815
               
               
               Cow position:chr20:15093386-15093600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):38, 105

               
               
               Conread position:645-834
               
               
               Cow position:chr20:9587907-9587720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:660-804
               
               
               Cow position:chr20:13278336-13278479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:664-815
               
               
               Cow position:chr20:29313930-29313779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):26, 31

               
               
               Conread position:664-834
               
               
               Cow position:chr20:10866675-10866844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:666-825
               
               
               Cow position:chr20:31076319-31076477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:667-834
               
               
               Cow position:chr20:10496104-10495937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):100, 29

               
               
               Conread position:668-834
               
               
               Cow position:chr20:5225448-5225607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:671-795
               
               
               Cow position:chr20:9294633-9294510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:677-831
               
               
               Cow position:chr20:17667365-17667212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:683-834
               
               
               Cow position:chr20:2681949-2681799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:697-834
               
               
               Cow position:chr20:31080466-31080329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:713-834
               
               
               Cow position:chr20:18356306-18356185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-581
               
               
               Cow position:chr21:16278375-16277727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 42

               
               
               Conread position:6-786
               
               
               Cow position:chr21:4035330-4036142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:832
               
               
               Alignm identity:537
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 88

               
               
               Conread position:73-284
               
               
               Cow position:chr21:14727621-14727400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):68, 34

               
               
               Conread position:73-380
               
               
               Cow position:chr21:17370665-17371009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-409
               
               
               Cow position:chr21:33620325-33619972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:252
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):19, 29

               
               
               Conread position:73-410
               
               
               Cow position:chr21:28442301-28441957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):19, 29

               
               
               Conread position:73-444
               
               
               Cow position:chr21:7597376-7597796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-461
               
               
               Cow position:chr21:18979290-18979707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):106, 35

               
               
               Conread position:73-540
               
               
               Cow position:chr21:30627193-30627706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:348
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):74, 34

               
               
               Conread position:73-579
               
               
               Cow position:chr21:34684918-34684377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:376
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):16, 39

               
               
               Conread position:73-580
               
               
               Cow position:chr21:4718925-4719493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:382
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-580
               
               
               Cow position:chr21:29423953-29423390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:380
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:73-627
               
               
               Cow position:chr21:20243728-20244324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 34

               
               
               Conread position:73-645
               
               
               Cow position:chr21:33964845-33965461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:73-645
               
               
               Cow position:chr21:47532598-47531995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 28

               
               
               Conread position:73-668
               
               
               Cow position:chr21:26875486-26874825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:73-692
               
               
               Cow position:chr21:34899790-34900469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 31

               
               
               Conread position:73-732
               
               
               Cow position:chr21:48262691-48261984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:73-804
               
               
               Cow position:chr21:32396156-32396926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:73-819
               
               
               Cow position:chr21:31512376-31513189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:820
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-825
               
               
               Cow position:chr21:27065705-27066526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:825
               
               
               Alignm identity:552
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-825
               
               
               Cow position:chr21:27287870-27287055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:821
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-830
               
               
               Cow position:chr21:12802218-12803016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:814
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-833
               
               
               Cow position:chr21:22855787-22854988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:825
               
               
               Alignm identity:597
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr21:2537284-2538081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:814
               
               
               Alignm identity:520
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):51, 31

               
               
               Conread position:73-834
               
               
               Cow position:chr21:5021033-5020210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:826
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:73-834
               
               
               Cow position:chr21:26399890-26400700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:815
               
               
               Alignm identity:526
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 36

               
               
               Conread position:73-834
               
               
               Cow position:chr21:27124826-27125653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:832
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr21:28915082-28915906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:829
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:74-410
               
               
               Cow position:chr21:4279199-4278822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:258
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):68, 39

               
               
               Conread position:74-642
               
               
               Cow position:chr21:9863054-9863662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:422
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):25, 136

               
               
               Conread position:74-823
               
               
               Cow position:chr21:12153699-12152905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:810
               
               
               Alignm identity:541
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 33

               
               
               Conread position:74-834
               
               
               Cow position:chr21:18285695-18284871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:830
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 38

               
               
               Conread position:75-369
               
               
               Cow position:chr21:42443044-42443374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):64, 32

               
               
               Conread position:82-528
               
               
               Cow position:chr21:18818774-18819248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:321
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):67, 26

               
               
               Conread position:95-644
               
               
               Cow position:chr21:3765910-3766508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 33

               
               
               Conread position:107-693
               
               
               Cow position:chr21:42460232-42460848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 56

               
               
               Conread position:113-564
               
               
               Cow position:chr21:1058311-1057815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 15

               
               
               Conread position:119-410
               
               
               Cow position:chr21:26241076-26240780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):23, 84

               
               
               Conread position:122-382
               
               
               Cow position:chr21:13315293-13315014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 206

               
               
               Conread position:122-580
               
               
               Cow position:chr21:6765187-6765698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:340
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:122-825
               
               
               Cow position:chr21:4079842-4079116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 11

               
               
               Conread position:122-834
               
               
               Cow position:chr21:149978-149214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:532
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 599

               
               
               Conread position:123-741
               
               
               Cow position:chr21:25473000-25472356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:123-831
               
               
               Cow position:chr21:44861764-44862499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 37

               
               
               Conread position:132-440
               
               
               Cow position:chr21:29213663-29213342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):93, 12

               
               
               Conread position:138-834
               
               
               Cow position:chr21:9896158-9895430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 90

               
               
               Conread position:139-598
               
               
               Cow position:chr21:8071285-8071792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:345
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):13, 60

               
               
               Conread position:139-721
               
               
               Cow position:chr21:18850917-18851534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 20

               
               
               Conread position:139-834
               
               
               Cow position:chr21:33997738-33998457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 75

               
               
               Conread position:142-446
               
               
               Cow position:chr21:28028440-28028103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:142-823
               
               
               Cow position:chr21:2768027-2768762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 606

               
               
               Conread position:143-320
               
               
               Cow position:chr21:34301387-34301203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:143-335
               
               
               Cow position:chr21:2366824-2366623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-364
               
               
               Cow position:chr21:29214678-29214919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:143-369
               
               
               Cow position:chr21:37873866-37874107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 10

               
               
               Conread position:143-372
               
               
               Cow position:chr21:11663437-11663687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr21:26854886-26855146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr21:28625515-28625267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr21:16575640-16575981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr21:30850669-30850328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-471
               
               
               Cow position:chr21:4541380-4541729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:143-472
               
               
               Cow position:chr21:16768316-16768676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-480
               
               
               Cow position:chr21:36163482-36163845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):87, 13

               
               
               Conread position:143-508
               
               
               Cow position:chr21:13089995-13090372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:252
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):87, 18

               
               
               Conread position:143-522
               
               
               Cow position:chr21:18786708-18787114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:143-539
               
               
               Cow position:chr21:28477102-28476676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):79, 18

               
               
               Conread position:143-548
               
               
               Cow position:chr21:46830758-46831201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-580
               
               
               Cow position:chr21:2293376-2293855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 98

               
               
               Conread position:143-580
               
               
               Cow position:chr21:32773742-32773262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:327
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-614
               
               
               Cow position:chr21:33832170-33832690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:352
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-635
               
               
               Cow position:chr21:28598372-28597860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 13

               
               
               Conread position:143-645
               
               
               Cow position:chr21:13303002-13302454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:377
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):82, 18

               
               
               Conread position:143-645
               
               
               Cow position:chr21:13735355-13735901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-645
               
               
               Cow position:chr21:19626903-19627449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-645
               
               
               Cow position:chr21:23341458-23340909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-683
               
               
               Cow position:chr21:2904986-2905575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-721
               
               
               Cow position:chr21:20262859-20263469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-768
               
               
               Cow position:chr21:4585870-4586548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 10

               
               
               Conread position:143-805
               
               
               Cow position:chr21:13300620-13299915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:143-815
               
               
               Cow position:chr21:10854063-10853348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:143-819
               
               
               Cow position:chr21:1765730-1766439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-822
               
               
               Cow position:chr21:33257363-33256632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-823
               
               
               Cow position:chr21:33983466-33984199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-826
               
               
               Cow position:chr21:36534407-36535136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-829
               
               
               Cow position:chr21:19351054-19351791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-831
               
               
               Cow position:chr21:33709693-33710432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr21:1196344-1195603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr21:2514654-2513914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr21:2878035-2878771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr21:3782579-3781841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr21:4812535-4813274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr21:4898166-4898897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr21:5642030-5642772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:525
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr21:10571077-10570351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr21:30966136-30966879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr21:31252805-31252063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr21:41795918-41796656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr21:48273391-48274133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:144-337
               
               
               Cow position:chr21:39429426-39429216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-382
               
               
               Cow position:chr21:39486468-39486726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:144-453
               
               
               Cow position:chr21:17207973-17207644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):7, 151

               
               
               Conread position:144-453
               
               
               Cow position:chr21:26628573-26628234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-467
               
               
               Cow position:chr21:44761876-44762228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):7, 324

               
               
               Conread position:144-787
               
               
               Cow position:chr21:44804777-44805458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 15

               
               
               Conread position:144-825
               
               
               Cow position:chr21:26633424-26634154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-834
               
               
               Cow position:chr21:33316560-33317302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 12

               
               
               Conread position:145-398
               
               
               Cow position:chr21:33350178-33349900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-506
               
               
               Cow position:chr21:28810779-28811172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:145-523
               
               
               Cow position:chr21:33934109-33934511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-562
               
               
               Cow position:chr21:13199723-13199285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:285
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:145-721
               
               
               Cow position:chr21:18836855-18837470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 14

               
               
               Conread position:145-775
               
               
               Cow position:chr21:39094525-39093866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:406
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):7, 61

               
               
               Conread position:145-815
               
               
               Cow position:chr21:4732739-4733446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-825
               
               
               Cow position:chr21:5009664-5010398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:145-825
               
               
               Cow position:chr21:27619715-27620423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr21:22463994-22463255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:146-571
               
               
               Cow position:chr21:471095-470638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:300
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):13, 330

               
               
               Conread position:146-611
               
               
               Cow position:chr21:24697952-24697465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:317
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):5, 14

               
               
               Conread position:146-710
               
               
               Cow position:chr21:28908337-28908952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 13

               
               
               Conread position:146-786
               
               
               Cow position:chr21:22719296-22719983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 601

               
               
               Conread position:146-812
               
               
               Cow position:chr21:29253411-29254112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:458
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):13, 53

               
               
               Conread position:146-834
               
               
               Cow position:chr21:33307773-33307047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:483
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):13, 29

               
               
               Conread position:146-834
               
               
               Cow position:chr21:47649147-47648404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 142

               
               
               Conread position:147-442
               
               
               Cow position:chr21:23293686-23294008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):12, 194

               
               
               Conread position:147-458
               
               
               Cow position:chr21:38900250-38899915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:243
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):14, 253

               
               
               Conread position:147-470
               
               
               Cow position:chr21:39700630-39700984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):12, 139

               
               
               Conread position:147-522
               
               
               Cow position:chr21:2503543-2503138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):16, 90

               
               
               Conread position:147-541
               
               
               Cow position:chr21:20910628-20911053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 22

               
               
               Conread position:147-644
               
               
               Cow position:chr21:45781931-45782466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:357
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):12, 50

               
               
               Conread position:147-660
               
               
               Cow position:chr21:27375926-27375348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:382
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):12, 350

               
               
               Conread position:147-692
               
               
               Cow position:chr21:43403633-43404232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 341

               
               
               Conread position:147-725
               
               
               Cow position:chr21:37298945-37298333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 458

               
               
               Conread position:147-765
               
               
               Cow position:chr21:5596582-5595951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:411
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:147-831
               
               
               Cow position:chr21:24887444-24886723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 9

               
               
               Conread position:147-834
               
               
               Cow position:chr21:27607888-27608636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 606

               
               
               Conread position:147-834
               
               
               Cow position:chr21:28259465-28258737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 314

               
               
               Conread position:147-834
               
               
               Cow position:chr21:48530976-48530233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 352

               
               
               Conread position:148-480
               
               
               Cow position:chr21:34591690-34592039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 271

               
               
               Conread position:148-685
               
               
               Cow position:chr21:15545887-15546470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 282

               
               
               Conread position:148-709
               
               
               Cow position:chr21:39417875-39417266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:398
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):11, 375

               
               
               Conread position:150-380
               
               
               Cow position:chr21:29015671-29015917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):74, 9

               
               
               Conread position:150-387
               
               
               Cow position:chr21:12075933-12076188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):72, 8

               
               
               Conread position:150-492
               
               
               Cow position:chr21:13111328-13111685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):72, 8

               
               
               Conread position:150-522
               
               
               Cow position:chr21:9209106-9208708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):73, 9

               
               
               Conread position:150-689
               
               
               Cow position:chr21:38450210-38450776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 119

               
               
               Conread position:150-834
               
               
               Cow position:chr21:2419992-2419267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 9

               
               
               Conread position:153-369
               
               
               Cow position:chr21:37517896-37518135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:153-615
               
               
               Cow position:chr21:13704213-13704723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:330
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):72, 88

               
               
               Conread position:153-834
               
               
               Cow position:chr21:48291559-48292284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 382

               
               
               Conread position:154-822
               
               
               Cow position:chr21:30595293-30596012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 122

               
               
               Conread position:158-382
               
               
               Cow position:chr21:25480064-25479818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr21:34181458-34181212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-452
               
               
               Cow position:chr21:3496713-3497039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr21:18574307-18573989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):64, 147

               
               
               Conread position:158-480
               
               
               Cow position:chr21:42842493-42842843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:264
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):60, 315

               
               
               Conread position:158-528
               
               
               Cow position:chr21:31950206-31949804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):64, 38

               
               
               Conread position:158-528
               
               
               Cow position:chr21:36892439-36892844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:277
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:158-529
               
               
               Cow position:chr21:9010312-9010721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:281
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:158-554
               
               
               Cow position:chr21:28989077-28988656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):13, 276

               
               
               Conread position:158-556
               
               
               Cow position:chr21:23329550-23329986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:298
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr21:18931962-18931506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:299
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 117

               
               
               Conread position:158-602
               
               
               Cow position:chr21:81537-81048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 383

               
               
               Conread position:158-607
               
               
               Cow position:chr21:11144057-11144550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:325
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):60, 275

               
               
               Conread position:158-657
               
               
               Cow position:chr21:30354641-30354104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:349
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):53, 92

               
               
               Conread position:158-682
               
               
               Cow position:chr21:25598457-25597888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 199

               
               
               Conread position:158-692
               
               
               Cow position:chr21:47978060-47977472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-741
               
               
               Cow position:chr21:32238132-32237496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 589

               
               
               Conread position:158-765
               
               
               Cow position:chr21:47429134-47428476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 8

               
               
               Conread position:158-767
               
               
               Cow position:chr21:30298272-30297609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 590

               
               
               Conread position:158-777
               
               
               Cow position:chr21:16890051-16890721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 377

               
               
               Conread position:158-785
               
               
               Cow position:chr21:48234527-48235184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 397

               
               
               Conread position:158-795
               
               
               Cow position:chr21:37923969-37923290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 375

               
               
               Conread position:158-796
               
               
               Cow position:chr21:21216674-21217339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 357

               
               
               Conread position:158-800
               
               
               Cow position:chr21:25157078-25156387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 114

               
               
               Conread position:158-819
               
               
               Cow position:chr21:4559280-4559989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 319

               
               
               Conread position:158-834
               
               
               Cow position:chr21:7047392-7048118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 91

               
               
               Conread position:158-834
               
               
               Cow position:chr21:11509732-11509005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 593

               
               
               Conread position:158-834
               
               
               Cow position:chr21:26756930-26757665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 601

               
               
               Conread position:158-834
               
               
               Cow position:chr21:27147759-27148487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-834
               
               
               Cow position:chr21:36376773-36376054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 252

               
               
               Conread position:158-834
               
               
               Cow position:chr21:39469972-39470701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 54

               
               
               Conread position:158-834
               
               
               Cow position:chr21:42917586-42916858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:159-458
               
               
               Cow position:chr21:21411812-21412128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):60, 82

               
               
               Conread position:159-807
               
               
               Cow position:chr21:40083320-40082628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:439
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):65, 466

               
               
               Conread position:160-323
               
               
               Cow position:chr21:29855135-29854958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-337
               
               
               Cow position:chr21:26744496-26744689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 109

               
               
               Conread position:160-413
               
               
               Cow position:chr21:6619581-6619843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):37, 52

               
               
               Conread position:160-444
               
               
               Cow position:chr21:20588492-20588182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 24

               
               
               Conread position:160-467
               
               
               Cow position:chr21:42558565-42558226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:160-480
               
               
               Cow position:chr21:39077428-39077763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 101

               
               
               Conread position:160-526
               
               
               Cow position:chr21:48196231-48195844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 49

               
               
               Conread position:160-685
               
               
               Cow position:chr21:49655394-49655971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 114

               
               
               Conread position:160-741
               
               
               Cow position:chr21:4098351-4097735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 65

               
               
               Conread position:160-782
               
               
               Cow position:chr21:33728897-33728229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 141

               
               
               Conread position:160-788
               
               
               Cow position:chr21:40267646-40268300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 21

               
               
               Conread position:160-796
               
               
               Cow position:chr21:4265777-4266431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:416
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):62, 127

               
               
               Conread position:160-813
               
               
               Cow position:chr21:3253424-3252702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 181

               
               
               Conread position:160-824
               
               
               Cow position:chr21:6623611-6622899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 79

               
               
               Conread position:160-831
               
               
               Cow position:chr21:21940777-21941483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 92

               
               
               Conread position:160-834
               
               
               Cow position:chr21:25813636-25814329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 114

               
               
               Conread position:161-738
               
               
               Cow position:chr21:34141953-34142543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 156

               
               
               Conread position:161-834
               
               
               Cow position:chr21:47360407-47361104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 55

               
               
               Conread position:162-682
               
               
               Cow position:chr21:36506050-36506623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 324

               
               
               Conread position:163-720
               
               
               Cow position:chr21:23801654-23802252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 152

               
               
               Conread position:164-522
               
               
               Cow position:chr21:15584940-15585312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):58, 239

               
               
               Conread position:165-822
               
               
               Cow position:chr21:27342626-27343323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 133

               
               
               Conread position:165-825
               
               
               Cow position:chr21:24082618-24083282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:435
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):35, 105

               
               
               Conread position:165-832
               
               
               Cow position:chr21:4567728-4567057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 190

               
               
               Conread position:165-833
               
               
               Cow position:chr21:28057068-28056377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:423
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):45, 147

               
               
               Conread position:169-468
               
               
               Cow position:chr21:28210641-28210320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):56, 32

               
               
               Conread position:169-761
               
               
               Cow position:chr21:4192076-4191438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:412
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):63, 214

               
               
               Conread position:172-522
               
               
               Cow position:chr21:46973966-46974335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:266
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):58, 40

               
               
               Conread position:177-645
               
               
               Cow position:chr21:38865838-38866354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:345
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:180-512
               
               
               Cow position:chr21:2928104-2928469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:183-808
               
               
               Cow position:chr21:23548496-23549163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:420
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):42, 202

               
               
               Conread position:187-819
               
               
               Cow position:chr21:6965709-6966393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 402

               
               
               Conread position:189-518
               
               
               Cow position:chr21:4791875-4791514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):34, 180

               
               
               Conread position:189-736
               
               
               Cow position:chr21:31276099-31275509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 23

               
               
               Conread position:189-819
               
               
               Cow position:chr21:30565496-30564833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 36

               
               
               Conread position:203-693
               
               
               Cow position:chr21:44219425-44218879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:365
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:204-808
               
               
               Cow position:chr21:17144428-17143770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 541

               
               
               Conread position:208-834
               
               
               Cow position:chr21:25190390-25189708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 546

               
               
               Conread position:213-480
               
               
               Cow position:chr21:23585820-23585531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:214-834
               
               
               Cow position:chr21:20577676-20578320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:418
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):72, 7

               
               
               Conread position:214-834
               
               
               Cow position:chr21:32534540-32533880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 7

               
               
               Conread position:221-645
               
               
               Cow position:chr21:37147056-37147514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 58

               
               
               Conread position:222-455
               
               
               Cow position:chr21:49470343-49470097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:223-466
               
               
               Cow position:chr21:42364652-42364389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):60, 193

               
               
               Conread position:236-383
               
               
               Cow position:chr21:13678023-13678175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:242-823
               
               
               Cow position:chr21:23500976-23501583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:404
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):53, 336

               
               
               Conread position:246-708
               
               
               Cow position:chr21:18824000-18824482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 82

               
               
               Conread position:247-799
               
               
               Cow position:chr21:4722331-4721758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:247-834
               
               
               Cow position:chr21:34823870-34823240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 496

               
               
               Conread position:250-824
               
               
               Cow position:chr21:49647284-49647889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 222

               
               
               Conread position:254-834
               
               
               Cow position:chr21:24826448-24827068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 488

               
               
               Conread position:258-480
               
               
               Cow position:chr21:23448927-23448688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:269-826
               
               
               Cow position:chr21:7156036-7155468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 59

               
               
               Conread position:272-825
               
               
               Cow position:chr21:21919150-21918568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:383
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):26, 16

               
               
               Conread position:273-834
               
               
               Cow position:chr21:13163070-13162502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 151

               
               
               Conread position:277-615
               
               
               Cow position:chr21:34657646-34657285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):64, 87

               
               
               Conread position:285-520
               
               
               Cow position:chr21:18829238-18829481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):60, 85

               
               
               Conread position:286-824
               
               
               Cow position:chr21:26830911-26830359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:361
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):71, 18

               
               
               Conread position:289-834
               
               
               Cow position:chr21:45346-44767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 87

               
               
               Conread position:289-834
               
               
               Cow position:chr21:36977296-36977847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 37

               
               
               Conread position:290-521
               
               
               Cow position:chr21:39059687-39059923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):49, 126

               
               
               Conread position:290-622
               
               
               Cow position:chr21:39400878-39400522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 304

               
               
               Conread position:290-807
               
               
               Cow position:chr21:18791792-18792351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 433

               
               
               Conread position:290-832
               
               
               Cow position:chr21:23783761-23784317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 167

               
               
               Conread position:291-834
               
               
               Cow position:chr21:26699043-26699602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 53

               
               
               Conread position:292-834
               
               
               Cow position:chr21:37323162-37323735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:380
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):47, 231

               
               
               Conread position:293-736
               
               
               Cow position:chr21:14534253-14533775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:325
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):46, 436

               
               
               Conread position:311-721
               
               
               Cow position:chr21:18846714-18847159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 166

               
               
               Conread position:315-826
               
               
               Cow position:chr21:32203846-32203313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:349
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):71, 124

               
               
               Conread position:316-793
               
               
               Cow position:chr21:4739252-4738750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:329
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):23, 143

               
               
               Conread position:336-548
               
               
               Cow position:chr21:38027212-38026983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):41, 148

               
               
               Conread position:336-834
               
               
               Cow position:chr21:11405287-11405816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 395

               
               
               Conread position:336-834
               
               
               Cow position:chr21:39428995-39428466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 390

               
               
               Conread position:340-834
               
               
               Cow position:chr21:14727273-14726760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 381

               
               
               Conread position:341-824
               
               
               Cow position:chr21:33420388-33420902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:342-819
               
               
               Cow position:chr21:27428534-27429036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 127

               
               
               Conread position:348-825
               
               
               Cow position:chr21:30192982-30193487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:325
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 16

               
               
               Conread position:350-736
               
               
               Cow position:chr21:220057-219645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:270
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):28, 66

               
               
               Conread position:356-808
               
               
               Cow position:chr21:13315017-13314546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:323
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):31, 83

               
               
               Conread position:360-751
               
               
               Cow position:chr21:26615317-26615724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 59

               
               
               Conread position:374-825
               
               
               Cow position:chr21:3804231-3804707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:380-833
               
               
               Cow position:chr21:22944352-22943884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:312
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):36, 267

               
               
               Conread position:381-771
               
               
               Cow position:chr21:2664623-2665035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):20, 7

               
               
               Conread position:384-764
               
               
               Cow position:chr21:32300811-32300410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):17, 184

               
               
               Conread position:421-825
               
               
               Cow position:chr21:34180599-34181024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:423-759
               
               
               Cow position:chr21:449666-449308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):7, 286

               
               
               Conread position:425-807
               
               
               Cow position:chr21:12100023-12099626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 9

               
               
               Conread position:426-791
               
               
               Cow position:chr21:25603992-25604370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):17, 25

               
               
               Conread position:432-834
               
               
               Cow position:chr21:29213006-29212597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:269
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:439-804
               
               
               Cow position:chr21:1685705-1686081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):48, 174

               
               
               Conread position:476-834
               
               
               Cow position:chr21:16899731-16899355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):11, 27

               
               
               Conread position:490-834
               
               
               Cow position:chr21:44762542-44762897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:248
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:491-808
               
               
               Cow position:chr21:10042790-10042455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:243
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):34, 194

               
               
               Conread position:491-813
               
               
               Cow position:chr21:6864134-6864466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 89

               
               
               Conread position:491-815
               
               
               Cow position:chr21:21170899-21171242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-825
               
               
               Cow position:chr21:35024788-35024436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:491-829
               
               
               Cow position:chr21:37374632-37374285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:250
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:491-834
               
               
               Cow position:chr21:4283128-4283465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):33, 151

               
               
               Conread position:491-834
               
               
               Cow position:chr21:13111972-13112326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 134

               
               
               Conread position:494-834
               
               
               Cow position:chr21:47944382-47944018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:252
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):31, 190

               
               
               Conread position:505-834
               
               
               Cow position:chr21:30056303-30056640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:514-782
               
               
               Cow position:chr21:7062211-7062486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:514-834
               
               
               Cow position:chr21:30654960-30654639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:521-849
               
               
               Cow position:chr21:24949493-24949162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:527-807
               
               
               Cow position:chr21:21291105-21291395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):45, 152

               
               
               Conread position:530-825
               
               
               Cow position:chr21:2524298-2523997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):54, 18

               
               
               Conread position:545-834
               
               
               Cow position:chr21:38026731-38026439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 158

               
               
               Conread position:552-825
               
               
               Cow position:chr21:46974739-46975011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 152

               
               
               Conread position:570-827
               
               
               Cow position:chr21:49091125-49091388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):77, 132

               
               
               Conread position:579-777
               
               
               Cow position:chr21:39060283-39060485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):67, 120

               
               
               Conread position:591-809
               
               
               Cow position:chr21:28811506-28811717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:592-832
               
               
               Cow position:chr21:28026226-28025983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):53, 110

               
               
               Conread position:595-825
               
               
               Cow position:chr21:1284950-1285182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):50, 90

               
               
               Conread position:595-834
               
               
               Cow position:chr21:24297899-24298140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 110

               
               
               Conread position:609-823
               
               
               Cow position:chr21:27522608-27522822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):39, 51

               
               
               Conread position:609-834
               
               
               Cow position:chr21:33357971-33358192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):33, 43

               
               
               Conread position:634-834
               
               
               Cow position:chr21:37151585-37151385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):7, 13

               
               
               Conread position:646-834
               
               
               Cow position:chr21:30777290-30777103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr21:12325312-12325145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr21:34657191-34657023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:667-777
               
               
               Cow position:chr21:42843039-42843148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:668-834
               
               
               Cow position:chr21:3586841-3587006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:676-834
               
               
               Cow position:chr21:28988275-28988120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:696-811
               
               
               Cow position:chr21:80852-80737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr21:34901636-34901768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:700-825
               
               
               Cow position:chr21:47977207-47977083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:701-834
               
               
               Cow position:chr21:27625130-27625263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:705-834
               
               
               Cow position:chr21:2555407-2555536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:707-834
               
               
               Cow position:chr21:13010965-13010838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:716-834
               
               
               Cow position:chr21:23340495-23340613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-815
               
               
               Cow position:chr22:25967904-25968740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:859
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 55

               
               
               Conread position:54-410
               
               
               Cow position:chr22:3941797-3941398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):39, 19

               
               
               Conread position:54-615
               
               
               Cow position:chr22:41271470-41272082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 15

               
               
               Conread position:73-304
               
               
               Cow position:chr22:1874221-1873984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:73-339
               
               
               Cow position:chr22:13186982-13186704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):40, 26

               
               
               Conread position:73-382
               
               
               Cow position:chr22:36254608-36254263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:73-409
               
               
               Cow position:chr22:8481154-8480767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:73-409
               
               
               Cow position:chr22:8505399-8505012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:273
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:73-409
               
               
               Cow position:chr22:37381982-37381637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):40, 178

               
               
               Conread position:73-442
               
               
               Cow position:chr22:15869388-15868991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):71, 34

               
               
               Conread position:73-443
               
               
               Cow position:chr22:5623922-5624340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-453
               
               
               Cow position:chr22:799586-799155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:310
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):73, 27

               
               
               Conread position:73-512
               
               
               Cow position:chr22:4645282-4644829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:314
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):26, 40

               
               
               Conread position:73-512
               
               
               Cow position:chr22:29553452-29553951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:336
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:73-520
               
               
               Cow position:chr22:19597246-19597739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:319
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:73-522
               
               
               Cow position:chr22:31645815-31645334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:328
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 35

               
               
               Conread position:73-522
               
               
               Cow position:chr22:36188760-36188274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:333
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:73-528
               
               
               Cow position:chr22:13553075-13552571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:341
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):57, 28

               
               
               Conread position:73-537
               
               
               Cow position:chr22:6924742-6924245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:331
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):20, 58

               
               
               Conread position:73-542
               
               
               Cow position:chr22:35754974-35755495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:73-639
               
               
               Cow position:chr22:10361638-10361016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:73-734
               
               
               Cow position:chr22:33901577-33902296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:482
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:73-815
               
               
               Cow position:chr22:40374101-40373311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:802
               
               
               Alignm identity:556
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 31

               
               
               Conread position:73-825
               
               
               Cow position:chr22:9372050-9371259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:804
               
               
               Alignm identity:534
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-826
               
               
               Cow position:chr22:1310224-1311022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:811
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr22:11987998-11988815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:826
               
               
               Alignm identity:586
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr22:13721039-13721841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:815
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 35

               
               
               Conread position:73-834
               
               
               Cow position:chr22:13768989-13768201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:816
               
               
               Alignm identity:541
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:73-834
               
               
               Cow position:chr22:15012971-15013802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:835
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr22:21593130-21592314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:820
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-834
               
               
               Cow position:chr22:31331151-31331981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:834
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:74-371
               
               
               Cow position:chr22:22160214-22159899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):106, 30

               
               
               Conread position:74-387
               
               
               Cow position:chr22:4076392-4076723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):87, 33

               
               
               Conread position:75-502
               
               
               Cow position:chr22:45106414-45106884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:325
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):17, 27

               
               
               Conread position:75-825
               
               
               Cow position:chr22:19822906-19822085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:824
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 32

               
               
               Conread position:76-830
               
               
               Cow position:chr22:36571833-36572635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:809
               
               
               Alignm identity:589
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 35

               
               
               Conread position:80-410
               
               
               Cow position:chr22:645240-645602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 33

               
               
               Conread position:96-718
               
               
               Cow position:chr22:11837741-11838400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 38

               
               
               Conread position:122-382
               
               
               Cow position:chr22:9685462-9685180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):25, 92

               
               
               Conread position:122-395
               
               
               Cow position:chr22:40376217-40375929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 221

               
               
               Conread position:122-396
               
               
               Cow position:chr22:22022321-22022026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):27, 54

               
               
               Conread position:128-825
               
               
               Cow position:chr22:19140055-19140804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 57

               
               
               Conread position:141-825
               
               
               Cow position:chr22:34605805-34605113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:444
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):81, 15

               
               
               Conread position:142-295
               
               
               Cow position:chr22:15067823-15067662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):79, 14

               
               
               Conread position:142-522
               
               
               Cow position:chr22:18192153-18191752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:279
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:142-580
               
               
               Cow position:chr22:3807309-3806839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:313
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:142-834
               
               
               Cow position:chr22:22607793-22607048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:143-382
               
               
               Cow position:chr22:322195-322449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-382
               
               
               Cow position:chr22:556698-556953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr22:14845128-14845388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr22:27510706-27510446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-404
               
               
               Cow position:chr22:6622836-6623101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):123, 12

               
               
               Conread position:143-413
               
               
               Cow position:chr22:11805992-11806274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-440
               
               
               Cow position:chr22:1484273-1483960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):71, 13

               
               
               Conread position:143-441
               
               
               Cow position:chr22:1279973-1280302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-442
               
               
               Cow position:chr22:11643297-11643627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr22:13242958-13243299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:143-453
               
               
               Cow position:chr22:13897266-13896934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-510
               
               
               Cow position:chr22:11127720-11127325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-510
               
               
               Cow position:chr22:11231664-11232059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-517
               
               
               Cow position:chr22:8876666-8876267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:289
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-520
               
               
               Cow position:chr22:9285108-9285518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:279
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-522
               
               
               Cow position:chr22:22048567-22048978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-527
               
               
               Cow position:chr22:1521841-1522258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:287
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-551
               
               
               Cow position:chr22:14005574-14005136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):30, 140

               
               
               Conread position:143-579
               
               
               Cow position:chr22:29464520-29464046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:328
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:143-580
               
               
               Cow position:chr22:23864442-23863968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:327
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-634
               
               
               Cow position:chr22:3270197-3270723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-645
               
               
               Cow position:chr22:10550500-10549951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-645
               
               
               Cow position:chr22:14817007-14817553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-645
               
               
               Cow position:chr22:25240898-25241434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-692
               
               
               Cow position:chr22:8776084-8776686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-711
               
               
               Cow position:chr22:16203430-16202814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-752
               
               
               Cow position:chr22:32944082-32943421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:143-796
               
               
               Cow position:chr22:34608104-34607417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-819
               
               
               Cow position:chr22:41927945-41928641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:448
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-821
               
               
               Cow position:chr22:44365576-44366306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-822
               
               
               Cow position:chr22:5315854-5315144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr22:11767206-11767896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr22:28785745-28785020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr22:40828433-40829169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-829
               
               
               Cow position:chr22:36857941-36858639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-829
               
               
               Cow position:chr22:37535693-37536402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-829
               
               
               Cow position:chr22:39464906-39465644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr22:1517407-1518149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr22:11754020-11754739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:143-834
               
               
               Cow position:chr22:17324869-17325591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr22:18030857-18030147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr22:20569408-20570150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr22:36555515-36556243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:536
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr22:39903015-39902272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr22:45281575-45280840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr22:46568488-46569198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 10

               
               
               Conread position:143-887
               
               
               Cow position:chr22:45845524-45844733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:801
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:144-480
               
               
               Cow position:chr22:27335358-27334999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-580
               
               
               Cow position:chr22:43261494-43261018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:325
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):87, 12

               
               
               Conread position:144-785
               
               
               Cow position:chr22:16103936-16103249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:444
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):81, 8

               
               
               Conread position:144-804
               
               
               Cow position:chr22:30364468-30363781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:442
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):86, 12

               
               
               Conread position:145-286
               
               
               Cow position:chr22:3011548-3011698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-358
               
               
               Cow position:chr22:25743554-25743772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-379
               
               
               Cow position:chr22:13688702-13688960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:145-382
               
               
               Cow position:chr22:12893190-12893434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):111, 47

               
               
               Conread position:145-402
               
               
               Cow position:chr22:34750000-34749738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-416
               
               
               Cow position:chr22:19828564-19828857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):6, 17

               
               
               Conread position:145-432
               
               
               Cow position:chr22:36193281-36192974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):77, 14

               
               
               Conread position:145-453
               
               
               Cow position:chr22:15173970-15173634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-477
               
               
               Cow position:chr22:37088620-37088977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-548
               
               
               Cow position:chr22:18233502-18233066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):27, 11

               
               
               Conread position:145-556
               
               
               Cow position:chr22:20087994-20087554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:305
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-579
               
               
               Cow position:chr22:33093969-33093502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:145-621
               
               
               Cow position:chr22:10161363-10160833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-641
               
               
               Cow position:chr22:38439744-38440277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:145-690
               
               
               Cow position:chr22:14509894-14510483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-822
               
               
               Cow position:chr22:12728035-12728758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 42

               
               
               Conread position:145-825
               
               
               Cow position:chr22:3433331-3434063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-825
               
               
               Cow position:chr22:15858414-15857695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 360

               
               
               Conread position:145-825
               
               
               Cow position:chr22:46611421-46612098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:451
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):6, 18

               
               
               Conread position:145-834
               
               
               Cow position:chr22:15953377-15954105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:145-834
               
               
               Cow position:chr22:26338927-26338207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:146-381
               
               
               Cow position:chr22:27508227-27507985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 10

               
               
               Conread position:146-470
               
               
               Cow position:chr22:17834197-17834553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):5, 15

               
               
               Conread position:146-629
               
               
               Cow position:chr22:36503078-36503600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:146-826
               
               
               Cow position:chr22:48271392-48272110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 15

               
               
               Conread position:147-284
               
               
               Cow position:chr22:17853501-17853650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-295
               
               
               Cow position:chr22:10602805-10602648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 134

               
               
               Conread position:147-320
               
               
               Cow position:chr22:11260092-11260274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 124

               
               
               Conread position:147-337
               
               
               Cow position:chr22:6286100-6286309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-377
               
               
               Cow position:chr22:7436021-7435777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):12, 210

               
               
               Conread position:147-377
               
               
               Cow position:chr22:32488102-32488356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-388
               
               
               Cow position:chr22:34894178-34893917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):12, 49

               
               
               Conread position:147-442
               
               
               Cow position:chr22:36594580-36594902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):12, 18

               
               
               Conread position:147-466
               
               
               Cow position:chr22:25765081-25765434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-467
               
               
               Cow position:chr22:27385924-27386277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-523
               
               
               Cow position:chr22:30963522-30963122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 144

               
               
               Conread position:147-527
               
               
               Cow position:chr22:30092420-30092019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):70, 104

               
               
               Conread position:147-538
               
               
               Cow position:chr22:11305518-11305089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):12, 48

               
               
               Conread position:147-580
               
               
               Cow position:chr22:18188809-18188372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:296
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 273

               
               
               Conread position:147-770
               
               
               Cow position:chr22:44924709-44925372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 50

               
               
               Conread position:147-815
               
               
               Cow position:chr22:32018935-32019656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 330

               
               
               Conread position:147-825
               
               
               Cow position:chr22:30918699-30917990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 192

               
               
               Conread position:147-833
               
               
               Cow position:chr22:29955594-29956299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 70

               
               
               Conread position:147-834
               
               
               Cow position:chr22:6340279-6339550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:147-834
               
               
               Cow position:chr22:8340040-8339308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 178

               
               
               Conread position:147-834
               
               
               Cow position:chr22:9269831-9269092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 394

               
               
               Conread position:147-834
               
               
               Cow position:chr22:12225275-12226003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 103

               
               
               Conread position:147-834
               
               
               Cow position:chr22:17677317-17676606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:450
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):12, 147

               
               
               Conread position:147-834
               
               
               Cow position:chr22:31316171-31315435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 604

               
               
               Conread position:147-834
               
               
               Cow position:chr22:33951329-33952059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 124

               
               
               Conread position:148-376
               
               
               Cow position:chr22:43384746-43384982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 80

               
               
               Conread position:148-417
               
               
               Cow position:chr22:5930702-5930988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 122

               
               
               Conread position:148-470
               
               
               Cow position:chr22:31593634-31593991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-547
               
               
               Cow position:chr22:32951861-32951433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 57

               
               
               Conread position:148-633
               
               
               Cow position:chr22:1036495-1035976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 40

               
               
               Conread position:148-643
               
               
               Cow position:chr22:1625423-1624888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:350
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):13, 347

               
               
               Conread position:148-796
               
               
               Cow position:chr22:29397711-29397025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 331

               
               
               Conread position:148-817
               
               
               Cow position:chr22:15920214-15920921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 127

               
               
               Conread position:148-825
               
               
               Cow position:chr22:5015710-5014987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 146

               
               
               Conread position:148-834
               
               
               Cow position:chr22:6498111-6498802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 115

               
               
               Conread position:149-644
               
               
               Cow position:chr22:33200899-33200367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 10

               
               
               Conread position:150-541
               
               
               Cow position:chr22:1027629-1027217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):72, 9

               
               
               Conread position:151-469
               
               
               Cow position:chr22:11746488-11746835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):66, 86

               
               
               Conread position:152-382
               
               
               Cow position:chr22:22278713-22278466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):65, 7

               
               
               Conread position:152-834
               
               
               Cow position:chr22:22107666-22106934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 7

               
               
               Conread position:153-387
               
               
               Cow position:chr22:46525180-46524927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 106

               
               
               Conread position:153-643
               
               
               Cow position:chr22:35934345-35934880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:353
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):69, 215

               
               
               Conread position:153-643
               
               
               Cow position:chr22:41388015-41387486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:346
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):6, 73

               
               
               Conread position:154-824
               
               
               Cow position:chr22:32221065-32220364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 144

               
               
               Conread position:157-326
               
               
               Cow position:chr22:13295943-13295764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):65, 84

               
               
               Conread position:158-382
               
               
               Cow position:chr22:22563289-22563043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-395
               
               
               Cow position:chr22:31870852-31871103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-418
               
               
               Cow position:chr22:19712769-19713056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr22:102542-102215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr22:19169043-19168718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):61, 100

               
               
               Conread position:158-453
               
               
               Cow position:chr22:22663458-22663785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr22:28996689-28997016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr22:33378923-33379250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-504
               
               
               Cow position:chr22:865111-865487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 215

               
               
               Conread position:158-516
               
               
               Cow position:chr22:6493496-6493102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):64, 278

               
               
               Conread position:158-522
               
               
               Cow position:chr22:15057895-15057500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):66, 287

               
               
               Conread position:158-540
               
               
               Cow position:chr22:981942-981522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-548
               
               
               Cow position:chr22:21363995-21364394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:289
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):177, 18

               
               
               Conread position:158-562
               
               
               Cow position:chr22:14807874-14807434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 424

               
               
               Conread position:158-571
               
               
               Cow position:chr22:32894527-32894071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 113

               
               
               Conread position:158-594
               
               
               Cow position:chr22:30514651-30514182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:321
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):37, 201

               
               
               Conread position:158-614
               
               
               Cow position:chr22:8299769-8299262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:342
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):61, 257

               
               
               Conread position:158-615
               
               
               Cow position:chr22:15356611-15356137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:316
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):75, 49

               
               
               Conread position:158-634
               
               
               Cow position:chr22:36208318-36207802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:347
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):66, 333

               
               
               Conread position:158-635
               
               
               Cow position:chr22:20236954-20237479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:349
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-644
               
               
               Cow position:chr22:8881753-8881232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:158-644
               
               
               Cow position:chr22:10330761-10330246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:346
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):66, 299

               
               
               Conread position:158-706
               
               
               Cow position:chr22:15497609-15497027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 44

               
               
               Conread position:158-728
               
               
               Cow position:chr22:32811592-32812202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 536

               
               
               Conread position:158-741
               
               
               Cow position:chr22:2560855-2561498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:426
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):65, 17

               
               
               Conread position:158-769
               
               
               Cow position:chr22:35909866-35910532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 597

               
               
               Conread position:158-807
               
               
               Cow position:chr22:15877381-15878090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:463
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):61, 54

               
               
               Conread position:158-825
               
               
               Cow position:chr22:30675117-30675827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 155

               
               
               Conread position:158-834
               
               
               Cow position:chr22:540755-540026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr22:697552-696822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 596

               
               
               Conread position:158-834
               
               
               Cow position:chr22:3274737-3275466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr22:3488716-3489443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 509

               
               
               Conread position:158-834
               
               
               Cow position:chr22:10906590-10907314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 314

               
               
               Conread position:158-834
               
               
               Cow position:chr22:21192594-21193311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 204

               
               
               Conread position:158-834
               
               
               Cow position:chr22:27306344-27307073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 589

               
               
               Conread position:158-834
               
               
               Cow position:chr22:29855470-29854742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-834
               
               
               Cow position:chr22:46578090-46578820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 40

               
               
               Conread position:159-521
               
               
               Cow position:chr22:8417868-8417474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:271
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):65, 28

               
               
               Conread position:159-541
               
               
               Cow position:chr22:13017389-13017801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 201

               
               
               Conread position:159-635
               
               
               Cow position:chr22:44099449-44099959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 342

               
               
               Conread position:159-815
               
               
               Cow position:chr22:8733911-8734625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 32

               
               
               Conread position:159-834
               
               
               Cow position:chr22:36357668-36356955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 10

               
               
               Conread position:160-387
               
               
               Cow position:chr22:24031580-24031819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 50

               
               
               Conread position:160-467
               
               
               Cow position:chr22:1591649-1591314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):62, 26

               
               
               Conread position:160-522
               
               
               Cow position:chr22:44462916-44462520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-570
               
               
               Cow position:chr22:5929290-5929712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 272

               
               
               Conread position:160-639
               
               
               Cow position:chr22:42777274-42776782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:317
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 144

               
               
               Conread position:160-644
               
               
               Cow position:chr22:33448688-33449199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:342
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):70, 313

               
               
               Conread position:160-725
               
               
               Cow position:chr22:32210230-32209607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 564

               
               
               Conread position:160-744
               
               
               Cow position:chr22:34172068-34171431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 581

               
               
               Conread position:160-766
               
               
               Cow position:chr22:46439708-46440348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:430
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):59, 195

               
               
               Conread position:160-810
               
               
               Cow position:chr22:12094788-12095460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:432
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):55, 104

               
               
               Conread position:160-825
               
               
               Cow position:chr22:28130354-28129653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 70

               
               
               Conread position:160-829
               
               
               Cow position:chr22:41845954-41846674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 36

               
               
               Conread position:160-834
               
               
               Cow position:chr22:15308344-15309072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 596

               
               
               Conread position:160-834
               
               
               Cow position:chr22:19600183-19600910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 379

               
               
               Conread position:160-834
               
               
               Cow position:chr22:37290236-37290951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 408

               
               
               Conread position:160-834
               
               
               Cow position:chr22:41407854-41408565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 506

               
               
               Conread position:161-522
               
               
               Cow position:chr22:29012779-29012385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):64, 324

               
               
               Conread position:161-527
               
               
               Cow position:chr22:8773388-8773789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:277
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:161-540
               
               
               Cow position:chr22:2415506-2415097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:280
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):64, 42

               
               
               Conread position:161-634
               
               
               Cow position:chr22:42234387-42233874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 291

               
               
               Conread position:161-729
               
               
               Cow position:chr22:37323879-37323273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 7

               
               
               Conread position:161-782
               
               
               Cow position:chr22:25336768-25336094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 585

               
               
               Conread position:161-834
               
               
               Cow position:chr22:40590021-40589281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 66

               
               
               Conread position:163-526
               
               
               Cow position:chr22:26759577-26759185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):62, 263

               
               
               Conread position:163-644
               
               
               Cow position:chr22:26167185-26167702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 247

               
               
               Conread position:163-786
               
               
               Cow position:chr22:19048166-19048835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:164-337
               
               
               Cow position:chr22:11922442-11922627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):61, 17

               
               
               Conread position:164-824
               
               
               Cow position:chr22:38247364-38248044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:448
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):58, 77

               
               
               Conread position:167-398
               
               
               Cow position:chr22:9277393-9277157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 77

               
               
               Conread position:167-540
               
               
               Cow position:chr22:45013373-45013773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):55, 74

               
               
               Conread position:167-834
               
               
               Cow position:chr22:13209986-13209277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:167-834
               
               
               Cow position:chr22:18807623-18808338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 456

               
               
               Conread position:167-834
               
               
               Cow position:chr22:18811303-18812019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 457

               
               
               Conread position:168-534
               
               
               Cow position:chr22:34901474-34901077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:277
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):54, 370

               
               
               Conread position:168-793
               
               
               Cow position:chr22:839070-839742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:424
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):48, 89

               
               
               Conread position:170-806
               
               
               Cow position:chr22:13696318-13697003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 578

               
               
               Conread position:171-539
               
               
               Cow position:chr22:2531490-2531894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):54, 333

               
               
               Conread position:173-605
               
               
               Cow position:chr22:41971950-41972415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 184

               
               
               Conread position:177-834
               
               
               Cow position:chr22:12868848-12869563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 311

               
               
               Conread position:179-849
               
               
               Cow position:chr22:14822065-14822780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:458
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):19, 24

               
               
               Conread position:182-572
               
               
               Cow position:chr22:39443428-39443843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:282
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):42, 164

               
               
               Conread position:183-807
               
               
               Cow position:chr22:25942825-25942188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:430
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):38, 280

               
               
               Conread position:185-437
               
               
               Cow position:chr22:5331186-5331469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:185-644
               
               
               Cow position:chr22:36785289-36784800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:340
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):25, 138

               
               
               Conread position:185-830
               
               
               Cow position:chr22:46033810-46033124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 299

               
               
               Conread position:189-771
               
               
               Cow position:chr22:10314213-10313586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 454

               
               
               Conread position:189-794
               
               
               Cow position:chr22:26089647-26090305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 564

               
               
               Conread position:201-524
               
               
               Cow position:chr22:23582242-23582594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):21, 229

               
               
               Conread position:201-634
               
               
               Cow position:chr22:44515362-44515829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:305
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):22, 327

               
               
               Conread position:201-834
               
               
               Cow position:chr22:34931502-34932186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 131

               
               
               Conread position:203-594
               
               
               Cow position:chr22:43045147-43045572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:283
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):23, 108

               
               
               Conread position:208-442
               
               
               Cow position:chr22:11599811-11599567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 82

               
               
               Conread position:208-813
               
               
               Cow position:chr22:9728434-9729061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 71

               
               
               Conread position:208-831
               
               
               Cow position:chr22:7156202-7155550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 96

               
               
               Conread position:221-520
               
               
               Cow position:chr22:28714448-28714123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:221-610
               
               
               Cow position:chr22:15174523-15174952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):15, 279

               
               
               Conread position:221-822
               
               
               Cow position:chr22:52059-51419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 194

               
               
               Conread position:221-825
               
               
               Cow position:chr22:24817216-24817863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 369

               
               
               Conread position:221-832
               
               
               Cow position:chr22:15889351-15888707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:413
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):15, 84

               
               
               Conread position:221-834
               
               
               Cow position:chr22:7280092-7279438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 519

               
               
               Conread position:221-834
               
               
               Cow position:chr22:34884229-34883595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:398
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):12, 142

               
               
               Conread position:222-504
               
               
               Cow position:chr22:22285543-22285238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 247

               
               
               Conread position:224-505
               
               
               Cow position:chr22:37032335-37032636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):68, 226

               
               
               Conread position:224-581
               
               
               Cow position:chr22:45583148-45582782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):115, 86

               
               
               Conread position:230-834
               
               
               Cow position:chr22:25340685-25340047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 502

               
               
               Conread position:234-825
               
               
               Cow position:chr22:26243891-26243287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:403
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):105, 7

               
               
               Conread position:235-685
               
               
               Cow position:chr22:3065270-3065755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 465

               
               
               Conread position:236-825
               
               
               Cow position:chr22:18603279-18603911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 112

               
               
               Conread position:236-834
               
               
               Cow position:chr22:14155423-14156066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:411
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):47, 287

               
               
               Conread position:243-408
               
               
               Cow position:chr22:3303109-3303287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:243-824
               
               
               Cow position:chr22:39473082-39473715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 254

               
               
               Conread position:243-834
               
               
               Cow position:chr22:533616-532985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 215

               
               
               Conread position:243-834
               
               
               Cow position:chr22:41946192-41946816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 443

               
               
               Conread position:245-834
               
               
               Cow position:chr22:13776006-13775396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 174

               
               
               Conread position:246-536
               
               
               Cow position:chr22:28178471-28178153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):42, 276

               
               
               Conread position:248-462
               
               
               Cow position:chr22:17853638-17853868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:251-834
               
               
               Cow position:chr22:42994687-42994064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 491

               
               
               Conread position:253-540
               
               
               Cow position:chr22:18122288-18122578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 24

               
               
               Conread position:257-755
               
               
               Cow position:chr22:47957757-47958288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:349
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 124

               
               
               Conread position:258-644
               
               
               Cow position:chr22:40386138-40385724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:277
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):34, 160

               
               
               Conread position:260-581
               
               
               Cow position:chr22:31306729-31306397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):73, 220

               
               
               Conread position:263-547
               
               
               Cow position:chr22:47462729-47462425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):15, 26

               
               
               Conread position:266-478
               
               
               Cow position:chr22:36540875-36541098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):75, 22

               
               
               Conread position:267-620
               
               
               Cow position:chr22:43789226-43788838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 264

               
               
               Conread position:267-833
               
               
               Cow position:chr22:6722074-6722675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 348

               
               
               Conread position:269-699
               
               
               Cow position:chr22:12625066-12625532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:277-522
               
               
               Cow position:chr22:5836029-5835772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):61, 173

               
               
               Conread position:280-834
               
               
               Cow position:chr22:13249301-13248719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:392
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):59, 190

               
               
               Conread position:281-834
               
               
               Cow position:chr22:14102615-14102060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:352
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):58, 126

               
               
               Conread position:290-640
               
               
               Cow position:chr22:32660745-32660372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):49, 179

               
               
               Conread position:290-818
               
               
               Cow position:chr22:35903760-35904294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:367
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):95, 47

               
               
               Conread position:291-479
               
               
               Cow position:chr22:29633144-29633345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:291-633
               
               
               Cow position:chr22:31598778-31598406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 164

               
               
               Conread position:291-678
               
               
               Cow position:chr22:699410-698992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):94, 336

               
               
               Conread position:293-640
               
               
               Cow position:chr22:17781484-17781861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 71

               
               
               Conread position:293-834
               
               
               Cow position:chr22:10577021-10577597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 442

               
               
               Conread position:301-834
               
               
               Cow position:chr22:26104680-26105248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 431

               
               
               Conread position:311-824
               
               
               Cow position:chr22:12968957-12969492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 210

               
               
               Conread position:316-834
               
               
               Cow position:chr22:288191-288740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 183

               
               
               Conread position:336-766
               
               
               Cow position:chr22:34758641-34759103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:312
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):49, 308

               
               
               Conread position:341-826
               
               
               Cow position:chr22:1864059-1863547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:338
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):46, 76

               
               
               Conread position:341-834
               
               
               Cow position:chr22:36584219-36584736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 113

               
               
               Conread position:345-740
               
               
               Cow position:chr22:15055977-15055554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 17

               
               
               Conread position:345-823
               
               
               Cow position:chr22:13185215-13184717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 115

               
               
               Conread position:374-720
               
               
               Cow position:chr22:36543103-36543467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 42

               
               
               Conread position:374-832
               
               
               Cow position:chr22:17993951-17994421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 137

               
               
               Conread position:379-791
               
               
               Cow position:chr22:18195068-18194628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 349

               
               
               Conread position:386-834
               
               
               Cow position:chr22:42500001-42500471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 340

               
               
               Conread position:386-834
               
               
               Cow position:chr22:43236202-43235728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 340

               
               
               Conread position:388-834
               
               
               Cow position:chr22:557340-557811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 339

               
               
               Conread position:414-675
               
               
               Cow position:chr22:8504796-8504518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):8, 105

               
               
               Conread position:414-825
               
               
               Cow position:chr22:1280317-1280739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):28, 167

               
               
               Conread position:420-825
               
               
               Cow position:chr22:3303337-3303753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):63, 291

               
               
               Conread position:421-675
               
               
               Cow position:chr22:8480543-8480274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):9, 96

               
               
               Conread position:421-819
               
               
               Cow position:chr22:323847-324262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 50

               
               
               Conread position:421-834
               
               
               Cow position:chr22:3714177-3714612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 259

               
               
               Conread position:423-788
               
               
               Cow position:chr22:46022243-46021874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):7, 85

               
               
               Conread position:424-815
               
               
               Cow position:chr22:14536146-14536535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):50, 9

               
               
               Conread position:427-824
               
               
               Cow position:chr22:1483732-1483317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):60, 181

               
               
               Conread position:432-837
               
               
               Cow position:chr22:44494555-44494149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):56, 29

               
               
               Conread position:434-782
               
               
               Cow position:chr22:1325429-1325063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):19, 74

               
               
               Conread position:434-828
               
               
               Cow position:chr22:36595197-36595604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 196

               
               
               Conread position:456-834
               
               
               Cow position:chr22:34615329-34614932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:489-834
               
               
               Cow position:chr22:2040585-2040213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):31, 231

               
               
               Conread position:491-796
               
               
               Cow position:chr22:5452905-5452581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-815
               
               
               Cow position:chr22:27320903-27320570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):34, 122

               
               
               Conread position:491-819
               
               
               Cow position:chr22:22862843-22862497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 224

               
               
               Conread position:491-824
               
               
               Cow position:chr22:45354071-45353725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):34, 220

               
               
               Conread position:491-825
               
               
               Cow position:chr22:22230858-22230504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):34, 226

               
               
               Conread position:491-825
               
               
               Cow position:chr22:37270348-37269996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 227

               
               
               Conread position:491-834
               
               
               Cow position:chr22:24143203-24143572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:258
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):34, 235

               
               
               Conread position:491-834
               
               
               Cow position:chr22:25724751-25725113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr22:26943956-26944318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr22:28997334-28997696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr22:29184867-29185229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 224

               
               
               Conread position:495-818
               
               
               Cow position:chr22:35162409-35162748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:244
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):30, 189

               
               
               Conread position:498-834
               
               
               Cow position:chr22:46587231-46586887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:505-748
               
               
               Cow position:chr22:18613940-18614191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:506-835
               
               
               Cow position:chr22:35668437-35668776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:508-804
               
               
               Cow position:chr22:31110651-31110338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):19, 42

               
               
               Conread position:508-834
               
               
               Cow position:chr22:981515-981182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 26

               
               
               Conread position:514-805
               
               
               Cow position:chr22:41170112-41169816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 21

               
               
               Conread position:521-806
               
               
               Cow position:chr22:27680063-27679767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:521-807
               
               
               Cow position:chr22:11970175-11970452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):48, 14

               
               
               Conread position:521-808
               
               
               Cow position:chr22:17893346-17893634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:530-815
               
               
               Cow position:chr22:23868176-23867883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:530-834
               
               
               Cow position:chr22:14629180-14629492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:530-834
               
               
               Cow position:chr22:28714065-28713753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:539-815
               
               
               Cow position:chr22:36852640-36852923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 167

               
               
               Conread position:541-829
               
               
               Cow position:chr22:3806816-3806518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):32, 168

               
               
               Conread position:545-834
               
               
               Cow position:chr22:32338511-32338214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 163

               
               
               Conread position:548-823
               
               
               Cow position:chr22:582378-582661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):20, 41

               
               
               Conread position:559-819
               
               
               Cow position:chr22:22934941-22934681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:561-834
               
               
               Cow position:chr22:36564976-36565253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):29, 141

               
               
               Conread position:564-834
               
               
               Cow position:chr22:36186786-36186523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):84, 132

               
               
               Conread position:568-813
               
               
               Cow position:chr22:30514169-30513921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):69, 100

               
               
               Conread position:568-831
               
               
               Cow position:chr22:41472362-41472632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):45, 135

               
               
               Conread position:568-834
               
               
               Cow position:chr22:34749710-34749457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:569-814
               
               
               Cow position:chr22:8118102-8118345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 134

               
               
               Conread position:569-823
               
               
               Cow position:chr22:1266895-1267150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 94

               
               
               Conread position:569-834
               
               
               Cow position:chr22:36541116-36541385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):77, 132

               
               
               Conread position:569-834
               
               
               Cow position:chr22:44381297-44381567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-834
               
               
               Cow position:chr22:45013862-45014135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):68, 39

               
               
               Conread position:569-834
               
               
               Cow position:chr22:45893928-45893658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:570-834
               
               
               Cow position:chr22:46524832-46524561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):71, 101

               
               
               Conread position:571-825
               
               
               Cow position:chr22:518219-518476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):75, 133

               
               
               Conread position:572-834
               
               
               Cow position:chr22:46581737-46582007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):74, 99

               
               
               Conread position:591-834
               
               
               Cow position:chr22:8486734-8486982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-834
               
               
               Cow position:chr22:10549871-10549624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-834
               
               
               Cow position:chr22:16144565-16144317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):61, 114

               
               
               Conread position:601-833
               
               
               Cow position:chr22:34596994-34596757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):46, 34

               
               
               Conread position:609-824
               
               
               Cow position:chr22:44480642-44480420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 59

               
               
               Conread position:609-834
               
               
               Cow position:chr22:28556815-28556585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):28, 98

               
               
               Conread position:609-834
               
               
               Cow position:chr22:34822028-34822258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:616-814
               
               
               Cow position:chr22:2390423-2390626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 87

               
               
               Conread position:616-815
               
               
               Cow position:chr22:44516107-44516311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):30, 86

               
               
               Conread position:619-811
               
               
               Cow position:chr22:22030330-22030136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):29, 46

               
               
               Conread position:620-825
               
               
               Cow position:chr22:3296642-3296852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):26, 83

               
               
               Conread position:620-834
               
               
               Cow position:chr22:36503928-36504139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:645-834
               
               
               Cow position:chr22:3271029-3271217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):69, 50

               
               
               Conread position:645-834
               
               
               Cow position:chr22:20237753-20237941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:645-834
               
               
               Cow position:chr22:44100260-44100448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:664-807
               
               
               Cow position:chr22:38963563-38963421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:668-834
               
               
               Cow position:chr22:21364481-21364645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:671-827
               
               
               Cow position:chr22:6583207-6583052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):10, 23

               
               
               Conread position:677-824
               
               
               Cow position:chr22:11785019-11785165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:693-849
               
               
               Cow position:chr22:1624882-1624728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr22:8299259-8299123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:710-831
               
               
               Cow position:chr22:36543759-36543880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:712-834
               
               
               Cow position:chr22:17782057-17782179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:716-834
               
               
               Cow position:chr22:8594996-8595114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:718-834
               
               
               Cow position:chr22:11609652-11609536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-825
               
               
               Cow position:chr23:14266134-14265243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:900
               
               
               Alignm identity:604
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 113

               
               
               Conread position:54-834
               
               
               Cow position:chr23:2791042-2791880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:850
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:69-509
               
               
               Cow position:chr23:12864407-12863929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:322
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:73-376
               
               
               Cow position:chr23:35284805-35285147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:73-379
               
               
               Cow position:chr23:31585017-31584672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-382
               
               
               Cow position:chr23:40710636-40710288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-408
               
               
               Cow position:chr23:10014050-10013671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):51, 34

               
               
               Conread position:73-453
               
               
               Cow position:chr23:12978453-12978044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:284
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):76, 35

               
               
               Conread position:73-522
               
               
               Cow position:chr23:40825498-40825016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:318
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:73-540
               
               
               Cow position:chr23:8291164-8290654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:345
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):73, 39

               
               
               Conread position:73-645
               
               
               Cow position:chr23:11070779-11070154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:73-800
               
               
               Cow position:chr23:25358048-25357264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:787
               
               
               Alignm identity:544
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr23:1398527-1399324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:816
               
               
               Alignm identity:558
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 35

               
               
               Conread position:73-834
               
               
               Cow position:chr23:4517241-4516425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:823
               
               
               Alignm identity:547
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 35

               
               
               Conread position:73-834
               
               
               Cow position:chr23:11344207-11343381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:831
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:73-834
               
               
               Cow position:chr23:21772193-21773022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:839
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:74-386
               
               
               Cow position:chr23:25665109-25665444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):73, 33

               
               
               Conread position:74-455
               
               
               Cow position:chr23:26230828-26230414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):25, 38

               
               
               Conread position:74-467
               
               
               Cow position:chr23:39389760-39389341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):106, 33

               
               
               Conread position:74-532
               
               
               Cow position:chr23:29446241-29446741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:336
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):65, 33

               
               
               Conread position:91-834
               
               
               Cow position:chr23:1337805-1338590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:802
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 34

               
               
               Conread position:93-634
               
               
               Cow position:chr23:31833312-31833909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:96-692
               
               
               Cow position:chr23:2472623-2473282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:432
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):8, 27

               
               
               Conread position:114-337
               
               
               Cow position:chr23:36748269-36748512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:114-387
               
               
               Cow position:chr23:2269720-2270016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:122-834
               
               
               Cow position:chr23:32007760-32008492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 63

               
               
               Conread position:128-540
               
               
               Cow position:chr23:24098772-24098321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:308
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:128-644
               
               
               Cow position:chr23:29447613-29448169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:370
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):12, 55

               
               
               Conread position:131-382
               
               
               Cow position:chr23:9215471-9215203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 120

               
               
               Conread position:139-528
               
               
               Cow position:chr23:20025568-20025142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:142-334
               
               
               Cow position:chr23:26305797-26305588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):80, 11

               
               
               Conread position:142-726
               
               
               Cow position:chr23:29459653-29460259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:143-327
               
               
               Cow position:chr23:10554596-10554791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-337
               
               
               Cow position:chr23:5721571-5721781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:143-410
               
               
               Cow position:chr23:573640-573930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-410
               
               
               Cow position:chr23:4809665-4809382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-410
               
               
               Cow position:chr23:14738525-14738233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):70, 46

               
               
               Conread position:143-412
               
               
               Cow position:chr23:1545367-1545085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-450
               
               
               Cow position:chr23:35937439-35937110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:242
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):82, 15

               
               
               Conread position:143-453
               
               
               Cow position:chr23:4581653-4581312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr23:5458366-5458025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-517
               
               
               Cow position:chr23:40553514-40553902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:143-580
               
               
               Cow position:chr23:8708018-8707538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:331
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-580
               
               
               Cow position:chr23:30244106-30243649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:322
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-611
               
               
               Cow position:chr23:21351328-21351836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:342
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-618
               
               
               Cow position:chr23:11376691-11377212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-624
               
               
               Cow position:chr23:3549568-3550091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:310
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-631
               
               
               Cow position:chr23:15180583-15180051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:360
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:143-644
               
               
               Cow position:chr23:28306472-28305922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:374
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:143-645
               
               
               Cow position:chr23:41015556-41015007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-729
               
               
               Cow position:chr23:4636724-4637365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-759
               
               
               Cow position:chr23:39745487-39744823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-769
               
               
               Cow position:chr23:2723373-2722713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-786
               
               
               Cow position:chr23:344842-345522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 13

               
               
               Conread position:143-798
               
               
               Cow position:chr23:2408587-2409292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-799
               
               
               Cow position:chr23:2180235-2180927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-819
               
               
               Cow position:chr23:3286384-3285658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-819
               
               
               Cow position:chr23:11128638-11127913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 10

               
               
               Conread position:143-825
               
               
               Cow position:chr23:1959754-1959023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr23:10679206-10679940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-825
               
               
               Cow position:chr23:14215607-14216330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-825
               
               
               Cow position:chr23:17846616-17845891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-830
               
               
               Cow position:chr23:2023461-2024195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-831
               
               
               Cow position:chr23:4437245-4436520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr23:22143683-22144424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-834
               
               
               Cow position:chr23:25670149-25670872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:540
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:143-835
               
               
               Cow position:chr23:5623954-5624689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:144-369
               
               
               Cow position:chr23:26941395-26941146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-465
               
               
               Cow position:chr23:2033018-2032676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:144-467
               
               
               Cow position:chr23:15020542-15020189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-569
               
               
               Cow position:chr23:23192819-23193262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:305
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):88, 12

               
               
               Conread position:145-387
               
               
               Cow position:chr23:362017-362280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-398
               
               
               Cow position:chr23:26840796-26840520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:145-548
               
               
               Cow position:chr23:40890399-40889960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:305
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:145-738
               
               
               Cow position:chr23:17000060-16999427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:145-828
               
               
               Cow position:chr23:38584539-38583829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:145-831
               
               
               Cow position:chr23:11078904-11078175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 8

               
               
               Conread position:146-382
               
               
               Cow position:chr23:2721343-2721089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:146-632
               
               
               Cow position:chr23:3877523-3878051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 194

               
               
               Conread position:146-759
               
               
               Cow position:chr23:2531905-2532524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 7

               
               
               Conread position:146-834
               
               
               Cow position:chr23:27402761-27402020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 336

               
               
               Conread position:147-462
               
               
               Cow position:chr23:7293805-7293464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:147-522
               
               
               Cow position:chr23:36308830-36308428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):12, 66

               
               
               Conread position:147-540
               
               
               Cow position:chr23:1535741-1535319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):12, 125

               
               
               Conread position:147-548
               
               
               Cow position:chr23:25554216-25553777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:306
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):12, 288

               
               
               Conread position:147-644
               
               
               Cow position:chr23:36027627-36028173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-735
               
               
               Cow position:chr23:28915953-28915318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 246

               
               
               Conread position:147-764
               
               
               Cow position:chr23:26828870-26828207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 14

               
               
               Conread position:147-819
               
               
               Cow position:chr23:15215225-15215934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 152

               
               
               Conread position:147-825
               
               
               Cow position:chr23:11814237-11814956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 207

               
               
               Conread position:147-825
               
               
               Cow position:chr23:16057315-16056614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 124

               
               
               Conread position:147-834
               
               
               Cow position:chr23:4892322-4891580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 574

               
               
               Conread position:147-834
               
               
               Cow position:chr23:6223442-6222734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 123

               
               
               Conread position:147-834
               
               
               Cow position:chr23:11782411-11781669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 597

               
               
               Conread position:147-834
               
               
               Cow position:chr23:14970329-14971067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 601

               
               
               Conread position:147-834
               
               
               Cow position:chr23:16495651-16496386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 323

               
               
               Conread position:147-834
               
               
               Cow position:chr23:30633966-30634710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 613

               
               
               Conread position:148-442
               
               
               Cow position:chr23:17522686-17522379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:148-461
               
               
               Cow position:chr23:29471687-29472030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 334

               
               
               Conread position:148-483
               
               
               Cow position:chr23:11405063-11405427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):13, 40

               
               
               Conread position:148-825
               
               
               Cow position:chr23:15529209-15528480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 570

               
               
               Conread position:149-382
               
               
               Cow position:chr23:8277225-8277470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 10

               
               
               Conread position:150-801
               
               
               Cow position:chr23:17876272-17876960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 9

               
               
               Conread position:151-526
               
               
               Cow position:chr23:1321776-1322184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:151-540
               
               
               Cow position:chr23:5870787-5871203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):8, 152

               
               
               Conread position:153-548
               
               
               Cow position:chr23:3167659-3167227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:301
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):6, 174

               
               
               Conread position:153-580
               
               
               Cow position:chr23:22170526-22170055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:326
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):6, 327

               
               
               Conread position:153-627
               
               
               Cow position:chr23:6593309-6593828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 178

               
               
               Conread position:157-825
               
               
               Cow position:chr23:3302469-3301749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 595

               
               
               Conread position:158-382
               
               
               Cow position:chr23:4544704-4544950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr23:28084768-28084522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr23:39784370-39784123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-387
               
               
               Cow position:chr23:33233712-33233960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 55

               
               
               Conread position:158-410
               
               
               Cow position:chr23:19948409-19948679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:158-453
               
               
               Cow position:chr23:1113565-1113238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr23:4267049-4266722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr23:9267249-9267576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:158-467
               
               
               Cow position:chr23:19056748-19057080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):65, 154

               
               
               Conread position:158-520
               
               
               Cow position:chr23:2528783-2529179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr23:671783-671319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:318
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-597
               
               
               Cow position:chr23:17404220-17403739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 36

               
               
               Conread position:158-645
               
               
               Cow position:chr23:38934621-38935136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 279

               
               
               Conread position:158-709
               
               
               Cow position:chr23:954187-954787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 113

               
               
               Conread position:158-814
               
               
               Cow position:chr23:5441530-5440823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-822
               
               
               Cow position:chr23:2320337-2321045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 378

               
               
               Conread position:158-822
               
               
               Cow position:chr23:30211105-30211745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:436
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):72, 43

               
               
               Conread position:158-825
               
               
               Cow position:chr23:10936684-10937409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 99

               
               
               Conread position:158-825
               
               
               Cow position:chr23:28222314-28221598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 109

               
               
               Conread position:158-830
               
               
               Cow position:chr23:2369403-2368714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 200

               
               
               Conread position:158-834
               
               
               Cow position:chr23:610314-609613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 103

               
               
               Conread position:158-834
               
               
               Cow position:chr23:4532089-4532813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 158

               
               
               Conread position:158-834
               
               
               Cow position:chr23:7360065-7359348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:527
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 11

               
               
               Conread position:158-834
               
               
               Cow position:chr23:11079998-11079268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 351

               
               
               Conread position:158-834
               
               
               Cow position:chr23:11712082-11712783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 138

               
               
               Conread position:158-834
               
               
               Cow position:chr23:24120168-24119439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 344

               
               
               Conread position:158-834
               
               
               Cow position:chr23:25351973-25351245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr23:31606041-31605312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:159-382
               
               
               Cow position:chr23:15569174-15568929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:160-387
               
               
               Cow position:chr23:615807-616052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):59, 81

               
               
               Conread position:160-580
               
               
               Cow position:chr23:19493464-19492996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:321
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:160-581
               
               
               Cow position:chr23:9393283-9393716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):106, 70

               
               
               Conread position:160-611
               
               
               Cow position:chr23:40773939-40773451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:331
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):62, 379

               
               
               Conread position:160-644
               
               
               Cow position:chr23:30622889-30623418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-819
               
               
               Cow position:chr23:29043395-29042682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 349

               
               
               Conread position:160-825
               
               
               Cow position:chr23:20152609-20153328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 596

               
               
               Conread position:160-829
               
               
               Cow position:chr23:2761509-2760789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 323

               
               
               Conread position:160-834
               
               
               Cow position:chr23:15038723-15039424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 345

               
               
               Conread position:160-834
               
               
               Cow position:chr23:37198900-37199630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 562

               
               
               Conread position:161-818
               
               
               Cow position:chr23:14839584-14840270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:162-772
               
               
               Cow position:chr23:38027352-38027999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 87

               
               
               Conread position:166-635
               
               
               Cow position:chr23:1310967-1311482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:340
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):57, 470

               
               
               Conread position:167-727
               
               
               Cow position:chr23:6173422-6174013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 82

               
               
               Conread position:171-644
               
               
               Cow position:chr23:10424509-10424018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:325
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 121

               
               
               Conread position:189-834
               
               
               Cow position:chr23:14959378-14960064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:208-819
               
               
               Cow position:chr23:3709954-3709304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 255

               
               
               Conread position:221-629
               
               
               Cow position:chr23:416463-416022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 84

               
               
               Conread position:221-644
               
               
               Cow position:chr23:21277095-21277555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:312
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):15, 169

               
               
               Conread position:221-685
               
               
               Cow position:chr23:31771728-31772234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:335
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):12, 309

               
               
               Conread position:223-793
               
               
               Cow position:chr23:40371822-40372430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:392
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):13, 249

               
               
               Conread position:224-603
               
               
               Cow position:chr23:27313383-27312965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:285
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:225-834
               
               
               Cow position:chr23:31704431-31703779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 267

               
               
               Conread position:235-755
               
               
               Cow position:chr23:1010027-1010579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:352
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 168

               
               
               Conread position:235-825
               
               
               Cow position:chr23:28987869-28987244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 462

               
               
               Conread position:245-805
               
               
               Cow position:chr23:20170694-20171284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 225

               
               
               Conread position:246-819
               
               
               Cow position:chr23:770986-771592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 7

               
               
               Conread position:254-834
               
               
               Cow position:chr23:19317957-19317372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:182
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):393, 451

               
               
               Conread position:258-741
               
               
               Cow position:chr23:8100739-8100240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:331
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):25, 77

               
               
               Conread position:266-761
               
               
               Cow position:chr23:29625473-29624933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 475

               
               
               Conread position:269-774
               
               
               Cow position:chr23:21252773-21252243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:344
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):13, 51

               
               
               Conread position:273-830
               
               
               Cow position:chr23:9193424-9194007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:290-693
               
               
               Cow position:chr23:34347340-34346898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:294
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:291-834
               
               
               Cow position:chr23:5396117-5396696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 445

               
               
               Conread position:292-808
               
               
               Cow position:chr23:28364305-28363779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:335
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):15, 20

               
               
               Conread position:295-834
               
               
               Cow position:chr23:1325857-1326429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 120

               
               
               Conread position:311-479
               
               
               Cow position:chr23:29959754-29959575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:311-831
               
               
               Cow position:chr23:20389579-20390127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 152

               
               
               Conread position:373-833
               
               
               Cow position:chr23:26318653-26318177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 138

               
               
               Conread position:386-819
               
               
               Cow position:chr23:1048515-1048974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:311
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):29, 21

               
               
               Conread position:414-766
               
               
               Cow position:chr23:13536750-13536384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):8, 164

               
               
               Conread position:421-824
               
               
               Cow position:chr23:2737540-2737119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):9, 287

               
               
               Conread position:421-834
               
               
               Cow position:chr23:3417009-3417444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr23:21008285-21008720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:425-788
               
               
               Cow position:chr23:16611492-16611879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:270
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):7, 216

               
               
               Conread position:435-832
               
               
               Cow position:chr23:31276802-31276386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):48, 70

               
               
               Conread position:448-834
               
               
               Cow position:chr23:26840250-26839849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 266

               
               
               Conread position:491-834
               
               
               Cow position:chr23:28083847-28084209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 194

               
               
               Conread position:493-834
               
               
               Cow position:chr23:41143685-41143325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 226

               
               
               Conread position:494-834
               
               
               Cow position:chr23:4265373-4265731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 224

               
               
               Conread position:505-824
               
               
               Cow position:chr23:20541041-20540715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:505-834
               
               
               Cow position:chr23:2720678-2720340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:521-831
               
               
               Cow position:chr23:2368313-2368003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:545-834
               
               
               Cow position:chr23:2437002-2437299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):15, 40

               
               
               Conread position:569-828
               
               
               Cow position:chr23:38301589-38301845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:569-834
               
               
               Cow position:chr23:1248373-1248643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-834
               
               
               Cow position:chr23:14790638-14790368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-834
               
               
               Cow position:chr23:29441943-29442211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):77, 49

               
               
               Conread position:591-826
               
               
               Cow position:chr23:8705993-8705756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):56, 38

               
               
               Conread position:591-834
               
               
               Cow position:chr23:671023-670775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):56, 111

               
               
               Conread position:591-834
               
               
               Cow position:chr23:4081277-4081029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:592-831
               
               
               Cow position:chr23:19492690-19492444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):56, 116

               
               
               Conread position:594-787
               
               
               Cow position:chr23:39388792-39388594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 113

               
               
               Conread position:594-829
               
               
               Cow position:chr23:40888571-40888330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):41, 107

               
               
               Conread position:595-834
               
               
               Cow position:chr23:25594152-25593906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 107

               
               
               Conread position:600-834
               
               
               Cow position:chr23:643614-643854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):46, 103

               
               
               Conread position:605-833
               
               
               Cow position:chr23:30239386-30239151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):21, 98

               
               
               Conread position:606-834
               
               
               Cow position:chr23:17403710-17403484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):41, 65

               
               
               Conread position:609-815
               
               
               Cow position:chr23:15505106-15504894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):39, 94

               
               
               Conread position:609-834
               
               
               Cow position:chr23:22170004-22169775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):37, 62

               
               
               Conread position:613-834
               
               
               Cow position:chr23:7370953-7370733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):68, 15

               
               
               Conread position:620-822
               
               
               Cow position:chr23:4807505-4807299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):17, 79

               
               
               Conread position:645-833
               
               
               Cow position:chr23:1925329-1925515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):139, 51

               
               
               Conread position:653-849
               
               
               Cow position:chr23:5871500-5871694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):179, 11

               
               
               Conread position:658-834
               
               
               Cow position:chr23:36028319-36028494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:665-833
               
               
               Cow position:chr23:756833-756998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):42, 30

               
               
               Conread position:666-823
               
               
               Cow position:chr23:7042771-7042925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr23:944032-943865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr23:8290429-8290262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:667-834
               
               
               Cow position:chr23:3843987-3844153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:670-826
               
               
               Cow position:chr23:2169382-2169229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:671-825
               
               
               Cow position:chr23:31893083-31892933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:675-825
               
               
               Cow position:chr23:28305605-28305456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:691-834
               
               
               Cow position:chr23:3878087-3878231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:696-823
               
               
               Cow position:chr23:35928946-35928817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):108, 60

               
               
               Conread position:701-834
               
               
               Cow position:chr23:25563453-25563320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:703-834
               
               
               Cow position:chr23:32493282-32493151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:707-831
               
               
               Cow position:chr23:794427-794551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-616
               
               
               Cow position:chr24:31357437-31356802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 23

               
               
               Conread position:6-283
               
               
               Cow position:chr24:2731007-2731299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 58

               
               
               Conread position:70-382
               
               
               Cow position:chr24:19707033-19706698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 197

               
               
               Conread position:70-782
               
               
               Cow position:chr24:12090783-12090009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 42

               
               
               Conread position:73-295
               
               
               Cow position:chr24:39441315-39441557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:73-329
               
               
               Cow position:chr24:29679829-29680106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):26, 40

               
               
               Conread position:73-382
               
               
               Cow position:chr24:7782323-7782664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:73-410
               
               
               Cow position:chr24:144546-144927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-410
               
               
               Cow position:chr24:35872450-35872795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:73-452
               
               
               Cow position:chr24:12377309-12377735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:73-497
               
               
               Cow position:chr24:29064165-29064636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:326
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-503
               
               
               Cow position:chr24:30766115-30765649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:317
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:73-528
               
               
               Cow position:chr24:31758492-31758987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:73-540
               
               
               Cow position:chr24:36710631-36710128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:326
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):19, 38

               
               
               Conread position:73-634
               
               
               Cow position:chr24:23052090-23052706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 174

               
               
               Conread position:73-642
               
               
               Cow position:chr24:28601254-28601851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 8

               
               
               Conread position:73-667
               
               
               Cow position:chr24:18222687-18223334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 34

               
               
               Conread position:73-685
               
               
               Cow position:chr24:6035372-6036056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-709
               
               
               Cow position:chr24:17309621-17310331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:470
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):74, 35

               
               
               Conread position:73-753
               
               
               Cow position:chr24:22954360-22953620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:73-782
               
               
               Cow position:chr24:32609116-32608336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:785
               
               
               Alignm identity:535
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:73-822
               
               
               Cow position:chr24:31067247-31068056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:815
               
               
               Alignm identity:555
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 28

               
               
               Conread position:73-834
               
               
               Cow position:chr24:13373700-13374536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:841
               
               
               Alignm identity:555
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 18

               
               
               Conread position:73-834
               
               
               Cow position:chr24:17406876-17406104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:809
               
               
               Alignm identity:525
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr24:40149590-40150415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:835
               
               
               Alignm identity:546
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 38

               
               
               Conread position:74-579
               
               
               Cow position:chr24:32854015-32853453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:381
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):75, 8

               
               
               Conread position:74-693
               
               
               Cow position:chr24:28497348-28498016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 17

               
               
               Conread position:75-580
               
               
               Cow position:chr24:38588584-38588022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:381
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):49, 32

               
               
               Conread position:75-681
               
               
               Cow position:chr24:29180152-29179494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 33

               
               
               Conread position:77-561
               
               
               Cow position:chr24:25991688-25992182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:349
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):54, 34

               
               
               Conread position:109-819
               
               
               Cow position:chr24:5862597-5863360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:766
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:122-616
               
               
               Cow position:chr24:10243817-10244347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:356
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):18, 364

               
               
               Conread position:122-644
               
               
               Cow position:chr24:17566590-17566024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 416

               
               
               Conread position:122-834
               
               
               Cow position:chr24:31302430-31301682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:758
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 323

               
               
               Conread position:123-410
               
               
               Cow position:chr24:31323678-31323377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 24

               
               
               Conread position:123-825
               
               
               Cow position:chr24:12202773-12203524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:755
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 352

               
               
               Conread position:139-410
               
               
               Cow position:chr24:19466534-19466823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):10, 221

               
               
               Conread position:139-834
               
               
               Cow position:chr24:18266766-18267514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:752
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 274

               
               
               Conread position:142-402
               
               
               Cow position:chr24:31370572-31370853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:142-614
               
               
               Cow position:chr24:11104431-11104950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:352
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:142-638
               
               
               Cow position:chr24:7749342-7748804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:143-338
               
               
               Cow position:chr24:17720700-17720912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-358
               
               
               Cow position:chr24:20974008-20974235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:143-369
               
               
               Cow position:chr24:17956214-17956460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:143-382
               
               
               Cow position:chr24:26795136-26794876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-387
               
               
               Cow position:chr24:33239163-33239424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-410
               
               
               Cow position:chr24:17752532-17752819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-442
               
               
               Cow position:chr24:32359426-32359756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-453
               
               
               Cow position:chr24:10035324-10035665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr24:18740649-18740990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-454
               
               
               Cow position:chr24:33053292-33053642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-455
               
               
               Cow position:chr24:27345176-27345519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-458
               
               
               Cow position:chr24:31815949-31815633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-467
               
               
               Cow position:chr24:11940481-11940126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-548
               
               
               Cow position:chr24:40518893-40519325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:305
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-551
               
               
               Cow position:chr24:9901091-9900646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:297
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-644
               
               
               Cow position:chr24:26412766-26412223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-755
               
               
               Cow position:chr24:25372822-25372159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-760
               
               
               Cow position:chr24:38814362-38813695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-767
               
               
               Cow position:chr24:17105162-17105831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-786
               
               
               Cow position:chr24:32740209-32740881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr24:11207887-11208621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:143-825
               
               
               Cow position:chr24:20368062-20367353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-833
               
               
               Cow position:chr24:16267163-16266438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:539
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr24:3163190-3162447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr24:14760619-14759871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-834
               
               
               Cow position:chr24:16080765-16081509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr24:18113175-18112434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr24:20283492-20284230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr24:29083945-29084688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr24:35823486-35824224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:144-571
               
               
               Cow position:chr24:40036235-40036705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:323
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):15, 44

               
               
               Conread position:144-747
               
               
               Cow position:chr24:37197004-37197657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:410
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):7, 18

               
               
               Conread position:145-337
               
               
               Cow position:chr24:24250111-24249902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-388
               
               
               Cow position:chr24:12293410-12293146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-457
               
               
               Cow position:chr24:6340420-6340078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):6, 16

               
               
               Conread position:145-522
               
               
               Cow position:chr24:36268088-36268497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-645
               
               
               Cow position:chr24:17161260-17161807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr24:43634822-43634096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:146-387
               
               
               Cow position:chr24:39123147-39122900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):13, 73

               
               
               Conread position:146-743
               
               
               Cow position:chr24:30893164-30893785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 14

               
               
               Conread position:146-831
               
               
               Cow position:chr24:22975528-22974787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 612

               
               
               Conread position:147-411
               
               
               Cow position:chr24:5608099-5608394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-480
               
               
               Cow position:chr24:26846885-26847254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-523
               
               
               Cow position:chr24:30870251-30870662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:285
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-548
               
               
               Cow position:chr24:5910536-5910085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:305
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):12, 35

               
               
               Conread position:147-548
               
               
               Cow position:chr24:45009902-45009465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 132

               
               
               Conread position:147-555
               
               
               Cow position:chr24:42943962-42944383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:285
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):12, 127

               
               
               Conread position:147-594
               
               
               Cow position:chr24:6415880-6415388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:334
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):12, 340

               
               
               Conread position:147-821
               
               
               Cow position:chr24:45087242-45086522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 336

               
               
               Conread position:147-822
               
               
               Cow position:chr24:17365267-17365988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 190

               
               
               Conread position:147-824
               
               
               Cow position:chr24:19643977-19643277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 79

               
               
               Conread position:147-824
               
               
               Cow position:chr24:38002346-38003052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:462
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):12, 137

               
               
               Conread position:147-825
               
               
               Cow position:chr24:16056150-16056867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 411

               
               
               Conread position:147-825
               
               
               Cow position:chr24:29191001-29190275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 362

               
               
               Conread position:147-825
               
               
               Cow position:chr24:41006189-41005465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 266

               
               
               Conread position:147-834
               
               
               Cow position:chr24:6413196-6412455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 576

               
               
               Conread position:147-834
               
               
               Cow position:chr24:8608046-8607306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 608

               
               
               Conread position:147-834
               
               
               Cow position:chr24:14336568-14335830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 76

               
               
               Conread position:147-834
               
               
               Cow position:chr24:40466695-40467439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:148-466
               
               
               Cow position:chr24:17544244-17544578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):11, 86

               
               
               Conread position:148-480
               
               
               Cow position:chr24:32759403-32759758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):11, 294

               
               
               Conread position:148-644
               
               
               Cow position:chr24:39956393-39956930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:351
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-817
               
               
               Cow position:chr24:32361147-32361857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 54

               
               
               Conread position:148-825
               
               
               Cow position:chr24:12331990-12332721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 324

               
               
               Conread position:148-834
               
               
               Cow position:chr24:9549975-9549243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:148-834
               
               
               Cow position:chr24:14375944-14376662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 148

               
               
               Conread position:150-422
               
               
               Cow position:chr24:25543496-25543770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):137, 8

               
               
               Conread position:151-810
               
               
               Cow position:chr24:14746058-14745365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 145

               
               
               Conread position:152-825
               
               
               Cow position:chr24:6067637-6068353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 7

               
               
               Conread position:153-452
               
               
               Cow position:chr24:25424390-25424070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):69, 109

               
               
               Conread position:153-826
               
               
               Cow position:chr24:26273941-26274629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 80

               
               
               Conread position:155-824
               
               
               Cow position:chr24:36036113-36036838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 268

               
               
               Conread position:156-466
               
               
               Cow position:chr24:7404215-7404551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:156-777
               
               
               Cow position:chr24:33575968-33575297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:427
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:157-825
               
               
               Cow position:chr24:3851302-3850581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 596

               
               
               Conread position:158-337
               
               
               Cow position:chr24:29155454-29155271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 43

               
               
               Conread position:158-382
               
               
               Cow position:chr24:11748404-11748649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 113

               
               
               Conread position:158-382
               
               
               Cow position:chr24:15084285-15084039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-410
               
               
               Cow position:chr24:6508432-6508712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:158-410
               
               
               Cow position:chr24:15880840-15880565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 102

               
               
               Conread position:158-410
               
               
               Cow position:chr24:39160166-39160431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):107, 61

               
               
               Conread position:158-417
               
               
               Cow position:chr24:40445354-40445087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):75, 48

               
               
               Conread position:158-453
               
               
               Cow position:chr24:11081077-11081401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:158-453
               
               
               Cow position:chr24:12447197-12446873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:158-469
               
               
               Cow position:chr24:45216753-45217066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):183, 67

               
               
               Conread position:158-476
               
               
               Cow position:chr24:38487965-38487624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-522
               
               
               Cow position:chr24:6443142-6442746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:264
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):64, 117

               
               
               Conread position:158-528
               
               
               Cow position:chr24:39067162-39067568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-540
               
               
               Cow position:chr24:14249877-14250297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr24:36308282-36307820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:310
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-583
               
               
               Cow position:chr24:38296762-38296293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:316
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-614
               
               
               Cow position:chr24:13497006-13496486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:348
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):62, 164

               
               
               Conread position:158-629
               
               
               Cow position:chr24:40427988-40428507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:347
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-643
               
               
               Cow position:chr24:20604454-20603922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:158-645
               
               
               Cow position:chr24:5990482-5991012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 380

               
               
               Conread position:158-645
               
               
               Cow position:chr24:30681427-30681951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 407

               
               
               Conread position:158-653
               
               
               Cow position:chr24:22047368-22047905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:158-671
               
               
               Cow position:chr24:13492201-13491640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:365
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):25, 286

               
               
               Conread position:158-685
               
               
               Cow position:chr24:3794188-3793609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-718
               
               
               Cow position:chr24:12198650-12199273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:407
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):64, 388

               
               
               Conread position:158-745
               
               
               Cow position:chr24:34761215-34760598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 387

               
               
               Conread position:158-755
               
               
               Cow position:chr24:5929484-5928837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 588

               
               
               Conread position:158-791
               
               
               Cow position:chr24:40272548-40271871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 572

               
               
               Conread position:158-815
               
               
               Cow position:chr24:19675515-19674822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:450
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):11, 41

               
               
               Conread position:158-815
               
               
               Cow position:chr24:36027809-36028518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 594

               
               
               Conread position:158-825
               
               
               Cow position:chr24:1841165-1841886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 590

               
               
               Conread position:158-825
               
               
               Cow position:chr24:7596857-7597573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 585

               
               
               Conread position:158-825
               
               
               Cow position:chr24:9071141-9071855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 377

               
               
               Conread position:158-825
               
               
               Cow position:chr24:41063163-41062440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:535
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-831
               
               
               Cow position:chr24:32823429-32824109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 40

               
               
               Conread position:158-834
               
               
               Cow position:chr24:207295-208027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 58

               
               
               Conread position:158-834
               
               
               Cow position:chr24:6020373-6021101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-834
               
               
               Cow position:chr24:6325666-6326392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-834
               
               
               Cow position:chr24:14353051-14352329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 58

               
               
               Conread position:158-834
               
               
               Cow position:chr24:15296821-15296092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr24:16646239-16646931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 40

               
               
               Conread position:158-834
               
               
               Cow position:chr24:17188567-17189295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 596

               
               
               Conread position:158-834
               
               
               Cow position:chr24:22795264-22794536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 312

               
               
               Conread position:159-729
               
               
               Cow position:chr24:26388204-26388803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:393
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):64, 203

               
               
               Conread position:160-337
               
               
               Cow position:chr24:13304794-13304989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-387
               
               
               Cow position:chr24:27761761-27761519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-528
               
               
               Cow position:chr24:33639794-33640195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:279
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):62, 380

               
               
               Conread position:160-562
               
               
               Cow position:chr24:15667049-15667488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:295
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:160-644
               
               
               Cow position:chr24:35067091-35067603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 145

               
               
               Conread position:160-692
               
               
               Cow position:chr24:13235969-13235390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 552

               
               
               Conread position:160-786
               
               
               Cow position:chr24:20507344-20508017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:434
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):62, 182

               
               
               Conread position:160-811
               
               
               Cow position:chr24:22288235-22287582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:434
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):61, 114

               
               
               Conread position:160-815
               
               
               Cow position:chr24:42938261-42938962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:451
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):57, 180

               
               
               Conread position:160-829
               
               
               Cow position:chr24:36779964-36779254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 148

               
               
               Conread position:160-831
               
               
               Cow position:chr24:12571616-12570892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:461
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):56, 599

               
               
               Conread position:160-834
               
               
               Cow position:chr24:12146886-12147613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 48

               
               
               Conread position:160-834
               
               
               Cow position:chr24:14173080-14173784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 130

               
               
               Conread position:161-409
               
               
               Cow position:chr24:25110950-25110676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:161-548
               
               
               Cow position:chr24:11462311-11462733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):61, 40

               
               
               Conread position:161-745
               
               
               Cow position:chr24:7466616-7467230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 26

               
               
               Conread position:161-758
               
               
               Cow position:chr24:7576130-7576768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:404
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):61, 26

               
               
               Conread position:161-833
               
               
               Cow position:chr24:22821369-22820688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:452
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):176, 40

               
               
               Conread position:161-834
               
               
               Cow position:chr24:14914160-14914840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 64

               
               
               Conread position:162-469
               
               
               Cow position:chr24:25677407-25677074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:162-551
               
               
               Cow position:chr24:12696422-12696848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:291
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:162-825
               
               
               Cow position:chr24:40552320-40551611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 12

               
               
               Conread position:163-509
               
               
               Cow position:chr24:12991458-12991100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):121, 60

               
               
               Conread position:164-831
               
               
               Cow position:chr24:6666101-6666802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 37

               
               
               Conread position:164-834
               
               
               Cow position:chr24:28689099-28688420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 111

               
               
               Conread position:165-808
               
               
               Cow position:chr24:17763917-17764596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 120

               
               
               Conread position:168-480
               
               
               Cow position:chr24:39482862-39482523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:248
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):57, 298

               
               
               Conread position:170-823
               
               
               Cow position:chr24:39500913-39501607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 54

               
               
               Conread position:173-834
               
               
               Cow position:chr24:17368242-17368960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 579

               
               
               Conread position:176-834
               
               
               Cow position:chr24:36555906-36556601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 13

               
               
               Conread position:177-834
               
               
               Cow position:chr24:25439863-25439201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 119

               
               
               Conread position:186-540
               
               
               Cow position:chr24:28336386-28336771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 94

               
               
               Conread position:187-825
               
               
               Cow position:chr24:13191837-13191154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 424

               
               
               Conread position:189-410
               
               
               Cow position:chr24:39901877-39902125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:189-825
               
               
               Cow position:chr24:33937603-33936915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 565

               
               
               Conread position:189-834
               
               
               Cow position:chr24:16558615-16559302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:208-828
               
               
               Cow position:chr24:10880175-10879534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:397
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):32, 97

               
               
               Conread position:221-588
               
               
               Cow position:chr24:16474938-16474538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:265
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):12, 199

               
               
               Conread position:221-799
               
               
               Cow position:chr24:12347761-12348382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 249

               
               
               Conread position:221-834
               
               
               Cow position:chr24:14194214-14194871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 372

               
               
               Conread position:232-825
               
               
               Cow position:chr24:19687966-19688594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 290

               
               
               Conread position:235-834
               
               
               Cow position:chr24:14146549-14147186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 190

               
               
               Conread position:241-627
               
               
               Cow position:chr24:33122531-33122116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:243-472
               
               
               Cow position:chr24:27762855-27762603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):47, 180

               
               
               Conread position:243-825
               
               
               Cow position:chr24:12119358-12119966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 247

               
               
               Conread position:245-833
               
               
               Cow position:chr24:6052677-6052063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 219

               
               
               Conread position:252-718
               
               
               Cow position:chr24:25698533-25698038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:302
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):7, 170

               
               
               Conread position:260-634
               
               
               Cow position:chr24:38641955-38641560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:260
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):84, 9

               
               
               Conread position:260-829
               
               
               Cow position:chr24:15372364-15371764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 239

               
               
               Conread position:270-797
               
               
               Cow position:chr24:36726730-36726169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 57

               
               
               Conread position:271-685
               
               
               Cow position:chr24:8431941-8431497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:298
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):68, 18

               
               
               Conread position:277-825
               
               
               Cow position:chr24:27148677-27148096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:282-834
               
               
               Cow position:chr24:40120536-40121114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:375
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):57, 139

               
               
               Conread position:286-478
               
               
               Cow position:chr24:10852709-10852909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:290-834
               
               
               Cow position:chr24:14609321-14609867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 128

               
               
               Conread position:292-511
               
               
               Cow position:chr24:42074967-42074732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 113

               
               
               Conread position:301-771
               
               
               Cow position:chr24:6524541-6524036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 432

               
               
               Conread position:307-834
               
               
               Cow position:chr24:36721984-36721422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 427

               
               
               Conread position:311-710
               
               
               Cow position:chr24:45003950-45003527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 110

               
               
               Conread position:336-542
               
               
               Cow position:chr24:36404825-36404606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):7, 126

               
               
               Conread position:336-834
               
               
               Cow position:chr24:17324197-17323674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 267

               
               
               Conread position:339-834
               
               
               Cow position:chr24:29181855-29181355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 135

               
               
               Conread position:353-834
               
               
               Cow position:chr24:24249017-24249524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 370

               
               
               Conread position:363-815
               
               
               Cow position:chr24:6544055-6543573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:324
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):28, 201

               
               
               Conread position:374-782
               
               
               Cow position:chr24:25285221-25284807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:286
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):42, 28

               
               
               Conread position:374-815
               
               
               Cow position:chr24:14865587-14866041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 38

               
               
               Conread position:374-815
               
               
               Cow position:chr24:14867513-14867967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 38

               
               
               Conread position:380-825
               
               
               Cow position:chr24:17411858-17411396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:316
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):33, 54

               
               
               Conread position:409-803
               
               
               Cow position:chr24:6508736-6509137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):21, 172

               
               
               Conread position:417-762
               
               
               Cow position:chr24:6146708-6146348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 45

               
               
               Conread position:421-808
               
               
               Cow position:chr24:39680906-39680510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 98

               
               
               Conread position:421-825
               
               
               Cow position:chr24:6079838-6079412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 298

               
               
               Conread position:421-834
               
               
               Cow position:chr24:9546584-9546149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr24:27724632-27725072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:301
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):9, 300

               
               
               Conread position:435-825
               
               
               Cow position:chr24:19467181-19467603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:460-818
               
               
               Cow position:chr24:4786063-4785681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:265
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:473-825
               
               
               Cow position:chr24:25647711-25648082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):14, 242

               
               
               Conread position:489-767
               
               
               Cow position:chr24:7404721-7405017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):33, 225

               
               
               Conread position:489-831
               
               
               Cow position:chr24:14307543-14307185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:490-833
               
               
               Cow position:chr24:19185491-19185133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 223

               
               
               Conread position:491-826
               
               
               Cow position:chr24:6339913-6339558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):28, 195

               
               
               Conread position:491-834
               
               
               Cow position:chr24:6964189-6963827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr24:17545559-17545202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 227

               
               
               Conread position:493-808
               
               
               Cow position:chr24:6542602-6542934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):37, 26

               
               
               Conread position:495-834
               
               
               Cow position:chr24:12165188-12164844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):78, 39

               
               
               Conread position:505-807
               
               
               Cow position:chr24:25059366-25059666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):9, 31

               
               
               Conread position:505-834
               
               
               Cow position:chr24:19199268-19198933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):67, 30

               
               
               Conread position:505-834
               
               
               Cow position:chr24:31842854-31842517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:506-803
               
               
               Cow position:chr24:12264476-12264780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:521-775
               
               
               Cow position:chr24:2731730-2731989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:530-834
               
               
               Cow position:chr24:145314-145626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:534-834
               
               
               Cow position:chr24:24484912-24485215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:539-823
               
               
               Cow position:chr24:13324120-13323832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 163

               
               
               Conread position:545-825
               
               
               Cow position:chr24:44942770-44942487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):40, 163

               
               
               Conread position:545-834
               
               
               Cow position:chr24:30767840-30767548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):28, 161

               
               
               Conread position:569-831
               
               
               Cow position:chr24:41671061-41670795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):45, 135

               
               
               Conread position:569-833
               
               
               Cow position:chr24:16562177-16562436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):78, 103

               
               
               Conread position:569-834
               
               
               Cow position:chr24:6441000-6440730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-834
               
               
               Cow position:chr24:12578768-12578498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-834
               
               
               Cow position:chr24:12697769-12698039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-834
               
               
               Cow position:chr24:14463951-14464219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 133

               
               
               Conread position:571-825
               
               
               Cow position:chr24:19885517-19885277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:581-819
               
               
               Cow position:chr24:29068793-29069032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):65, 5

               
               
               Conread position:591-777
               
               
               Cow position:chr24:40519594-40519786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-834
               
               
               Cow position:chr24:7064791-7064543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-834
               
               
               Cow position:chr24:38487631-38487383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):56, 38

               
               
               Conread position:592-825
               
               
               Cow position:chr24:6415082-6414829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 108

               
               
               Conread position:609-825
               
               
               Cow position:chr24:13319963-13320184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):14, 9

               
               
               Conread position:609-825
               
               
               Cow position:chr24:37100013-37099804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):173, 37

               
               
               Conread position:609-834
               
               
               Cow position:chr24:7457389-7457159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:613-834
               
               
               Cow position:chr24:14250636-14250863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):10, 93

               
               
               Conread position:643-832
               
               
               Cow position:chr24:17956437-17956625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:666-824
               
               
               Cow position:chr24:42815495-42815338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr24:12208925-12208758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr24:14381146-14381312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):118, 20

               
               
               Conread position:666-834
               
               
               Cow position:chr24:38641309-38641143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:670-825
               
               
               Cow position:chr24:17295418-17295575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:671-834
               
               
               Cow position:chr24:23092912-23093071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:671-834
               
               
               Cow position:chr24:23095650-23095809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:681-834
               
               
               Cow position:chr24:36713361-36713210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:697-824
               
               
               Cow position:chr24:13299744-13299871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-825
               
               
               Cow position:chr24:13235345-13235218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:702-815
               
               
               Cow position:chr24:6036132-6036245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:712-815
               
               
               Cow position:chr24:16603496-16603599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:87
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:52-759
               
               
               Cow position:chr25:18474716-18473958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:772
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 21

               
               
               Conread position:69-834
               
               
               Cow position:chr25:35567381-35568210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:835
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:70-645
               
               
               Cow position:chr25:35589577-35588946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:73-308
               
               
               Cow position:chr25:14568932-14568684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):21, 9

               
               
               Conread position:73-382
               
               
               Cow position:chr25:26682066-26681732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-398
               
               
               Cow position:chr25:35625734-35626077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):96, 28

               
               
               Conread position:73-579
               
               
               Cow position:chr25:39386330-39386891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:375
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):80, 28

               
               
               Conread position:73-621
               
               
               Cow position:chr25:12755933-12756532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:400
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:73-643
               
               
               Cow position:chr25:18269955-18269336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:416
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):15, 63

               
               
               Conread position:73-695
               
               
               Cow position:chr25:23394367-23393685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:73-782
               
               
               Cow position:chr25:25510394-25509599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:801
               
               
               Alignm identity:544
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-815
               
               
               Cow position:chr25:11666167-11665370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:809
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 35

               
               
               Conread position:73-825
               
               
               Cow position:chr25:25480134-25480925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:797
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-825
               
               
               Cow position:chr25:33838877-33838064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:826
               
               
               Alignm identity:555
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 25

               
               
               Conread position:73-825
               
               
               Cow position:chr25:41135253-41136050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:811
               
               
               Alignm identity:546
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 31

               
               
               Conread position:73-834
               
               
               Cow position:chr25:18072713-18071911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:814
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:73-849
               
               
               Cow position:chr25:25826955-25826112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:848
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 31

               
               
               Conread position:75-382
               
               
               Cow position:chr25:11895992-11896337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):20, 16

               
               
               Conread position:75-405
               
               
               Cow position:chr25:22111792-22111433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):57, 33

               
               
               Conread position:77-551
               
               
               Cow position:chr25:17992646-17993169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 30

               
               
               Conread position:80-692
               
               
               Cow position:chr25:13429629-13430292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:437
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):69, 28

               
               
               Conread position:95-540
               
               
               Cow position:chr25:35446408-35445934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:315
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):54, 33

               
               
               Conread position:122-290
               
               
               Cow position:chr25:17659007-17658835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 136

               
               
               Conread position:123-741
               
               
               Cow position:chr25:11956266-11955598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 92

               
               
               Conread position:127-768
               
               
               Cow position:chr25:26896476-26895811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:440
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):104, 25

               
               
               Conread position:128-824
               
               
               Cow position:chr25:17658048-17657309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 171

               
               
               Conread position:130-773
               
               
               Cow position:chr25:41356368-41357062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 53

               
               
               Conread position:143-335
               
               
               Cow position:chr25:2047143-2047352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:143-382
               
               
               Cow position:chr25:9595730-9595473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr25:21966806-21966546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr25:27076474-27076218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:143-450
               
               
               Cow position:chr25:8935213-8934875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr25:15429263-15429604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr25:27145839-27145501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-491
               
               
               Cow position:chr25:4858081-4858464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:264
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-520
               
               
               Cow position:chr25:9055076-9054677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:143-522
               
               
               Cow position:chr25:17994881-17995287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:143-580
               
               
               Cow position:chr25:28275254-28275729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:334
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-635
               
               
               Cow position:chr25:37593820-37593280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:363
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-643
               
               
               Cow position:chr25:14755998-14756539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-692
               
               
               Cow position:chr25:13787381-13786790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 10

               
               
               Conread position:143-804
               
               
               Cow position:chr25:26353372-26354079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-825
               
               
               Cow position:chr25:18490488-18489747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr25:26755704-26754968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:143-834
               
               
               Cow position:chr25:28863286-28862545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr25:35754830-35755569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:144-389
               
               
               Cow position:chr25:32607104-32607362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):75, 12

               
               
               Conread position:144-645
               
               
               Cow position:chr25:34164146-34164689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:144-796
               
               
               Cow position:chr25:3172002-3172687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 9

               
               
               Conread position:144-825
               
               
               Cow position:chr25:18189963-18190687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-834
               
               
               Cow position:chr25:23772860-23773567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 18

               
               
               Conread position:144-834
               
               
               Cow position:chr25:37648834-37648125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 229

               
               
               Conread position:145-617
               
               
               Cow position:chr25:2516416-2515902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr25:41121417-41120681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 17

               
               
               Conread position:146-418
               
               
               Cow position:chr25:35612922-35613219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):13, 62

               
               
               Conread position:147-358
               
               
               Cow position:chr25:37447016-37446788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:147-382
               
               
               Cow position:chr25:18323944-18324200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-410
               
               
               Cow position:chr25:18023169-18022877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):10, 187

               
               
               Conread position:147-541
               
               
               Cow position:chr25:28264760-28264330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:147-549
               
               
               Cow position:chr25:24227933-24228361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:299
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:147-577
               
               
               Cow position:chr25:34343495-34343966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-631
               
               
               Cow position:chr25:27231762-27231241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 114

               
               
               Conread position:147-822
               
               
               Cow position:chr25:24654760-24655483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 361

               
               
               Conread position:147-827
               
               
               Cow position:chr25:23672453-23673180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 45

               
               
               Conread position:147-834
               
               
               Cow position:chr25:13960474-13959745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 283

               
               
               Conread position:147-834
               
               
               Cow position:chr25:23739828-23740568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 45

               
               
               Conread position:148-472
               
               
               Cow position:chr25:20613950-20613599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:250
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):11, 294

               
               
               Conread position:148-573
               
               
               Cow position:chr25:20075886-20075432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:317
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 328

               
               
               Conread position:148-741
               
               
               Cow position:chr25:18265604-18264964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 280

               
               
               Conread position:148-828
               
               
               Cow position:chr25:36512688-36511990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 208

               
               
               Conread position:148-834
               
               
               Cow position:chr25:41097784-41098522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 292

               
               
               Conread position:150-691
               
               
               Cow position:chr25:19367290-19367879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 8

               
               
               Conread position:150-834
               
               
               Cow position:chr25:9395821-9395093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 11

               
               
               Conread position:153-644
               
               
               Cow position:chr25:12081949-12082476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:360
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):72, 118

               
               
               Conread position:153-834
               
               
               Cow position:chr25:26282433-26281699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 602

               
               
               Conread position:155-818
               
               
               Cow position:chr25:26914643-26913927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 279

               
               
               Conread position:157-834
               
               
               Cow position:chr25:26780682-26781408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 592

               
               
               Conread position:158-382
               
               
               Cow position:chr25:17994120-17994366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr25:34121692-34121939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-402
               
               
               Cow position:chr25:36127505-36127774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):64, 103

               
               
               Conread position:158-403
               
               
               Cow position:chr25:34768082-34767817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):67, 33

               
               
               Conread position:158-452
               
               
               Cow position:chr25:17808376-17808701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr25:3688538-3688211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr25:17210732-17211058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):64, 6

               
               
               Conread position:158-465
               
               
               Cow position:chr25:9413746-9413410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-538
               
               
               Cow position:chr25:4522411-4522826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:158-540
               
               
               Cow position:chr25:8655692-8655273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:289
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr25:18330373-18330839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:311
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):65, 29

               
               
               Conread position:158-645
               
               
               Cow position:chr25:32610017-32610542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 467

               
               
               Conread position:158-667
               
               
               Cow position:chr25:19923922-19923373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:346
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):65, 28

               
               
               Conread position:158-692
               
               
               Cow position:chr25:26923246-26922657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:387
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):37, 349

               
               
               Conread position:158-708
               
               
               Cow position:chr25:19139169-19139772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 589

               
               
               Conread position:158-786
               
               
               Cow position:chr25:17905043-17904364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 589

               
               
               Conread position:158-811
               
               
               Cow position:chr25:37469191-37468547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 23

               
               
               Conread position:158-814
               
               
               Cow position:chr25:29802342-29803051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-825
               
               
               Cow position:chr25:20771934-20772648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 197

               
               
               Conread position:158-825
               
               
               Cow position:chr25:35554071-35553367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 581

               
               
               Conread position:158-829
               
               
               Cow position:chr25:17585613-17586339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 387

               
               
               Conread position:158-834
               
               
               Cow position:chr25:11044018-11043297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 377

               
               
               Conread position:158-834
               
               
               Cow position:chr25:19336924-19337647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 497

               
               
               Conread position:158-834
               
               
               Cow position:chr25:29525465-29526187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 29

               
               
               Conread position:158-834
               
               
               Cow position:chr25:36351141-36350414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 381

               
               
               Conread position:158-834
               
               
               Cow position:chr25:40389334-40390036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 319

               
               
               Conread position:159-410
               
               
               Cow position:chr25:16401489-16401768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:159-528
               
               
               Cow position:chr25:40321886-40322292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):48, 28

               
               
               Conread position:159-540
               
               
               Cow position:chr25:37967364-37966945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-453
               
               
               Cow position:chr25:14954639-14954955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):62, 81

               
               
               Conread position:160-453
               
               
               Cow position:chr25:34013358-34013677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):61, 268

               
               
               Conread position:160-462
               
               
               Cow position:chr25:30525975-30526304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 159

               
               
               Conread position:160-580
               
               
               Cow position:chr25:16922395-16922852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 14

               
               
               Conread position:160-693
               
               
               Cow position:chr25:35039487-35040069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:376
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):62, 39

               
               
               Conread position:160-732
               
               
               Cow position:chr25:21903838-21903227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:394
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):65, 228

               
               
               Conread position:160-742
               
               
               Cow position:chr25:16801836-16801245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:404
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):65, 399

               
               
               Conread position:160-756
               
               
               Cow position:chr25:24302866-24303512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 170

               
               
               Conread position:160-782
               
               
               Cow position:chr25:23325625-23326300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 224

               
               
               Conread position:160-824
               
               
               Cow position:chr25:11929162-11929854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 158

               
               
               Conread position:160-825
               
               
               Cow position:chr25:29312921-29313631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 377

               
               
               Conread position:160-825
               
               
               Cow position:chr25:33687808-33688536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 40

               
               
               Conread position:160-834
               
               
               Cow position:chr25:18886083-18886793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 561

               
               
               Conread position:160-834
               
               
               Cow position:chr25:34508781-34509505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 590

               
               
               Conread position:161-765
               
               
               Cow position:chr25:24636744-24637400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:428
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):46, 485

               
               
               Conread position:161-824
               
               
               Cow position:chr25:33066191-33065506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:440
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):63, 154

               
               
               Conread position:162-666
               
               
               Cow position:chr25:10012659-10013214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 382

               
               
               Conread position:163-774
               
               
               Cow position:chr25:9647350-9646699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:413
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):59, 466

               
               
               Conread position:165-462
               
               
               Cow position:chr25:14393709-14394019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):117, 53

               
               
               Conread position:165-822
               
               
               Cow position:chr25:34673192-34673886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 413

               
               
               Conread position:168-551
               
               
               Cow position:chr25:7800409-7799996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):58, 266

               
               
               Conread position:169-382
               
               
               Cow position:chr25:15453408-15453173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:169-815
               
               
               Cow position:chr25:13941343-13942035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:447
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):53, 360

               
               
               Conread position:170-410
               
               
               Cow position:chr25:9957405-9957648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):68, 40

               
               
               Conread position:170-831
               
               
               Cow position:chr25:20495927-20495249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 108

               
               
               Conread position:172-580
               
               
               Cow position:chr25:22151494-22151042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:303
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:173-824
               
               
               Cow position:chr25:18129589-18128920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 219

               
               
               Conread position:175-538
               
               
               Cow position:chr25:18486844-18486451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):42, 294

               
               
               Conread position:180-645
               
               
               Cow position:chr25:6955448-6954936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:334
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:180-764
               
               
               Cow position:chr25:26705501-26706138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 570

               
               
               Conread position:186-831
               
               
               Cow position:chr25:2595141-2594455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 159

               
               
               Conread position:189-597
               
               
               Cow position:chr25:23914038-23913588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:311
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):30, 241

               
               
               Conread position:201-825
               
               
               Cow position:chr25:12938847-12939524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 307

               
               
               Conread position:220-825
               
               
               Cow position:chr25:10137146-10136507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 252

               
               
               Conread position:221-803
               
               
               Cow position:chr25:24204805-24205402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:221-834
               
               
               Cow position:chr25:27018905-27019563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 312

               
               
               Conread position:225-834
               
               
               Cow position:chr25:7223104-7223757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 519

               
               
               Conread position:235-540
               
               
               Cow position:chr25:23366983-23366649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:235-775
               
               
               Cow position:chr25:34668263-34667699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:386
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):60, 42

               
               
               Conread position:241-834
               
               
               Cow position:chr25:393570-392948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 489

               
               
               Conread position:246-824
               
               
               Cow position:chr25:33574437-33575041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:257-812
               
               
               Cow position:chr25:17562322-17561744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 11

               
               
               Conread position:290-540
               
               
               Cow position:chr25:29357759-29358029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:290-834
               
               
               Cow position:chr25:34502969-34503555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 447

               
               
               Conread position:291-778
               
               
               Cow position:chr25:18208435-18208952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:337
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):48, 73

               
               
               Conread position:291-834
               
               
               Cow position:chr25:32577410-32577989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 442

               
               
               Conread position:292-764
               
               
               Cow position:chr25:31073345-31073853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:341
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):47, 437

               
               
               Conread position:294-819
               
               
               Cow position:chr25:23998941-23999488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 180

               
               
               Conread position:302-815
               
               
               Cow position:chr25:26931337-26930788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 431

               
               
               Conread position:315-825
               
               
               Cow position:chr25:20633988-20633450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 278

               
               
               Conread position:317-795
               
               
               Cow position:chr25:449581-450073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 22

               
               
               Conread position:345-834
               
               
               Cow position:chr25:10633815-10634331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 17

               
               
               Conread position:345-834
               
               
               Cow position:chr25:21968368-21967843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:351
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 67

               
               
               Conread position:414-645
               
               
               Cow position:chr25:14790319-14790076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):9, 77

               
               
               Conread position:414-769
               
               
               Cow position:chr25:9957943-9958312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:421-834
               
               
               Cow position:chr25:21949907-21949473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 205

               
               
               Conread position:421-834
               
               
               Cow position:chr25:35571928-35571494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 300

               
               
               Conread position:422-807
               
               
               Cow position:chr25:20100719-20100316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):53, 96

               
               
               Conread position:428-788
               
               
               Cow position:chr25:11896719-11896338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):48, 293

               
               
               Conread position:442-767
               
               
               Cow position:chr25:40657612-40657276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 68

               
               
               Conread position:491-834
               
               
               Cow position:chr25:24007944-24007582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:514-804
               
               
               Cow position:chr25:8875538-8875836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:514-828
               
               
               Cow position:chr25:25731539-25731224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:536-834
               
               
               Cow position:chr25:3373656-3373968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):10, 173

               
               
               Conread position:537-834
               
               
               Cow position:chr25:25109029-25109353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 154

               
               
               Conread position:545-834
               
               
               Cow position:chr25:22197414-22197712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):28, 164

               
               
               Conread position:545-834
               
               
               Cow position:chr25:34257134-34257432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):28, 164

               
               
               Conread position:567-832
               
               
               Cow position:chr25:35561554-35561821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 12

               
               
               Conread position:569-807
               
               
               Cow position:chr25:1972734-1972971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):77, 32

               
               
               Conread position:569-807
               
               
               Cow position:chr25:24670627-24670866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):72, 47

               
               
               Conread position:569-835
               
               
               Cow position:chr25:10704401-10704128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):64, 139

               
               
               Conread position:570-834
               
               
               Cow position:chr25:34369076-34368807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):55, 31

               
               
               Conread position:583-771
               
               
               Cow position:chr25:23912963-23912771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):63, 18

               
               
               Conread position:591-825
               
               
               Cow position:chr25:17554546-17554788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:591-834
               
               
               Cow position:chr25:33990326-33990571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):56, 112

               
               
               Conread position:592-825
               
               
               Cow position:chr25:16923220-16923450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):54, 107

               
               
               Conread position:592-834
               
               
               Cow position:chr25:22150998-22150750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:594-787
               
               
               Cow position:chr25:24228568-24228766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 108

               
               
               Conread position:595-815
               
               
               Cow position:chr25:18423626-18423405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):51, 110

               
               
               Conread position:596-816
               
               
               Cow position:chr25:30340801-30341028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):51, 106

               
               
               Conread position:609-834
               
               
               Cow position:chr25:24449335-24449563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):32, 92

               
               
               Conread position:621-815
               
               
               Cow position:chr25:18179913-18179715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):27, 86

               
               
               Conread position:645-824
               
               
               Cow position:chr25:12082974-12083146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr25:39387477-39387310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:669-808
               
               
               Cow position:chr25:29134259-29134396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:689-828
               
               
               Cow position:chr25:12834762-12834900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:697-833
               
               
               Cow position:chr25:39554814-39554950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-408
               
               
               Cow position:chr26:6837429-6837003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:292
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):25, 21

               
               
               Conread position:73-394
               
               
               Cow position:chr26:10966256-10966606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-452
               
               
               Cow position:chr26:8352476-8352074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:290
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):19, 29

               
               
               Conread position:73-456
               
               
               Cow position:chr26:20219002-20218575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:73-458
               
               
               Cow position:chr26:12965120-12965527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:285
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:73-522
               
               
               Cow position:chr26:7459207-7459703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:331
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):66, 17

               
               
               Conread position:73-526
               
               
               Cow position:chr26:3026679-3027183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:343
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:73-539
               
               
               Cow position:chr26:12661992-12662492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:346
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):25, 39

               
               
               Conread position:73-548
               
               
               Cow position:chr26:17288560-17288041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 29

               
               
               Conread position:73-565
               
               
               Cow position:chr26:11370448-11369905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:369
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-580
               
               
               Cow position:chr26:6430327-6429779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:370
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:73-825
               
               
               Cow position:chr26:4440010-4440814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:811
               
               
               Alignm identity:558
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:74-457
               
               
               Cow position:chr26:13976372-13976777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:74-468
               
               
               Cow position:chr26:614472-614874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):20, 38

               
               
               Conread position:122-408
               
               
               Cow position:chr26:755678-755992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:122-825
               
               
               Cow position:chr26:4324021-4324754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:753
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 276

               
               
               Conread position:123-580
               
               
               Cow position:chr26:13773740-13773244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:128-290
               
               
               Cow position:chr26:19698498-19698675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:137-548
               
               
               Cow position:chr26:18877485-18877038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:310
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):80, 64

               
               
               Conread position:139-387
               
               
               Cow position:chr26:8746600-8746866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:143-293
               
               
               Cow position:chr26:8404846-8404691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-369
               
               
               Cow position:chr26:3571773-3572019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr26:2487176-2486916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-402
               
               
               Cow position:chr26:23600362-23600641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-410
               
               
               Cow position:chr26:14897761-14897468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-453
               
               
               Cow position:chr26:11537498-11537157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-522
               
               
               Cow position:chr26:30786600-30786190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:143-540
               
               
               Cow position:chr26:29433905-29433471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-548
               
               
               Cow position:chr26:8308081-8308533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:330
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-580
               
               
               Cow position:chr26:23591368-23590888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:328
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-645
               
               
               Cow position:chr26:25393458-25392921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-755
               
               
               Cow position:chr26:9100319-9100970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-766
               
               
               Cow position:chr26:8084499-8083824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-806
               
               
               Cow position:chr26:14173731-14173037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-819
               
               
               Cow position:chr26:14487592-14488310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr26:9558197-9558942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr26:12584865-12585599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-825
               
               
               Cow position:chr26:30585687-30586406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:143-825
               
               
               Cow position:chr26:34265637-34264903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-829
               
               
               Cow position:chr26:1621320-1620589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-833
               
               
               Cow position:chr26:21012786-21012062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 99

               
               
               Conread position:143-834
               
               
               Cow position:chr26:3231138-3230398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr26:13806356-13807096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr26:23890076-23889340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr26:28706390-28707128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-835
               
               
               Cow position:chr26:27986933-27987657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-887
               
               
               Cow position:chr26:8810528-8809756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:795
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:144-413
               
               
               Cow position:chr26:15559158-15558865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-644
               
               
               Cow position:chr26:9694126-9694671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 8

               
               
               Conread position:145-364
               
               
               Cow position:chr26:15561539-15561768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-381
               
               
               Cow position:chr26:18918648-18918907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):13, 8

               
               
               Conread position:145-410
               
               
               Cow position:chr26:2348041-2348327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-410
               
               
               Cow position:chr26:21539064-21538773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-453
               
               
               Cow position:chr26:7677405-7677066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-453
               
               
               Cow position:chr26:16864946-16864606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-627
               
               
               Cow position:chr26:15199680-15199170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:354
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-828
               
               
               Cow position:chr26:10698844-10699555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:146-720
               
               
               Cow position:chr26:26238672-26238046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:404
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):15, 394

               
               
               Conread position:146-829
               
               
               Cow position:chr26:31138286-31139001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:533
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 14

               
               
               Conread position:147-339
               
               
               Cow position:chr26:20480911-20481105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 103

               
               
               Conread position:147-387
               
               
               Cow position:chr26:13556545-13556802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-408
               
               
               Cow position:chr26:7507006-7506727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):12, 206

               
               
               Conread position:147-548
               
               
               Cow position:chr26:12125905-12126320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):15, 122

               
               
               Conread position:147-571
               
               
               Cow position:chr26:22621872-22621410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:300
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):14, 183

               
               
               Conread position:147-834
               
               
               Cow position:chr26:5680210-5679460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:752
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 618

               
               
               Conread position:147-834
               
               
               Cow position:chr26:17327834-17327092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:148-768
               
               
               Cow position:chr26:20256288-20255636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 128

               
               
               Conread position:148-806
               
               
               Cow position:chr26:21351140-21350467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 85

               
               
               Conread position:148-834
               
               
               Cow position:chr26:35424167-35423427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 328

               
               
               Conread position:150-364
               
               
               Cow position:chr26:30569462-30569700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:152-834
               
               
               Cow position:chr26:1346331-1347064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 7

               
               
               Conread position:153-480
               
               
               Cow position:chr26:6476010-6476372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:156-819
               
               
               Cow position:chr26:3755658-3754977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 129

               
               
               Conread position:158-369
               
               
               Cow position:chr26:4728422-4728653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr26:5430153-5430399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr26:18383759-18383996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:158-398
               
               
               Cow position:chr26:33252828-33253080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):64, 199

               
               
               Conread position:158-453
               
               
               Cow position:chr26:11296745-11297071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:158-462
               
               
               Cow position:chr26:2770483-2770820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:158-467
               
               
               Cow position:chr26:3096990-3097331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-522
               
               
               Cow position:chr26:17169481-17169091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:267
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:158-542
               
               
               Cow position:chr26:6030344-6030741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 143

               
               
               Conread position:158-555
               
               
               Cow position:chr26:3706221-3705801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):59, 249

               
               
               Conread position:158-555
               
               
               Cow position:chr26:20019752-20019325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:291
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):64, 141

               
               
               Conread position:158-555
               
               
               Cow position:chr26:26612115-26611680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr26:9070221-9069754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:311
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr26:18928934-18928475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:312
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):64, 329

               
               
               Conread position:158-595
               
               
               Cow position:chr26:24239354-24238882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:158-614
               
               
               Cow position:chr26:15146153-15145649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:337
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-635
               
               
               Cow position:chr26:3564383-3564906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:346
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:158-644
               
               
               Cow position:chr26:3187409-3186885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:341
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):64, 324

               
               
               Conread position:158-645
               
               
               Cow position:chr26:7558959-7559492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:358
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):65, 41

               
               
               Conread position:158-645
               
               
               Cow position:chr26:8738758-8739293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:158-736
               
               
               Cow position:chr26:1342636-1343265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 491

               
               
               Conread position:158-766
               
               
               Cow position:chr26:22692044-22691388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 112

               
               
               Conread position:158-769
               
               
               Cow position:chr26:35560404-35561066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 593

               
               
               Conread position:158-781
               
               
               Cow position:chr26:11362041-11362687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 149

               
               
               Conread position:158-787
               
               
               Cow position:chr26:1088836-1088162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 247

               
               
               Conread position:158-787
               
               
               Cow position:chr26:3862420-3863097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 551

               
               
               Conread position:158-811
               
               
               Cow position:chr26:387337-386652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 37

               
               
               Conread position:158-822
               
               
               Cow position:chr26:1390641-1389926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 590

               
               
               Conread position:158-825
               
               
               Cow position:chr26:26286518-26285802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 116

               
               
               Conread position:158-834
               
               
               Cow position:chr26:368241-367562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:158-834
               
               
               Cow position:chr26:8873504-8872776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 596

               
               
               Conread position:158-834
               
               
               Cow position:chr26:8885501-8884778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 387

               
               
               Conread position:158-834
               
               
               Cow position:chr26:9115697-9114967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 231

               
               
               Conread position:158-834
               
               
               Cow position:chr26:13183969-13183241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-834
               
               
               Cow position:chr26:18803710-18804433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 470

               
               
               Conread position:158-834
               
               
               Cow position:chr26:18857773-18857052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 77

               
               
               Conread position:158-834
               
               
               Cow position:chr26:35121584-35122311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 593

               
               
               Conread position:159-450
               
               
               Cow position:chr26:16720135-16719809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:159-548
               
               
               Cow position:chr26:28422806-28423215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):63, 142

               
               
               Conread position:159-645
               
               
               Cow position:chr26:3833692-3833158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 342

               
               
               Conread position:159-834
               
               
               Cow position:chr26:798888-799599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 279

               
               
               Conread position:160-337
               
               
               Cow position:chr26:19347770-19347966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:160-453
               
               
               Cow position:chr26:6097911-6098232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:160-480
               
               
               Cow position:chr26:2610416-2610755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 81

               
               
               Conread position:160-548
               
               
               Cow position:chr26:22831382-22831805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:292
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):63, 340

               
               
               Conread position:160-548
               
               
               Cow position:chr26:34031203-34030792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:264
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):63, 150

               
               
               Conread position:160-634
               
               
               Cow position:chr26:6843565-6844085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 115

               
               
               Conread position:160-815
               
               
               Cow position:chr26:25340279-25340973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:447
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):62, 327

               
               
               Conread position:160-825
               
               
               Cow position:chr26:30593983-30594690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 47

               
               
               Conread position:160-834
               
               
               Cow position:chr26:33949719-33950438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:454
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):60, 307

               
               
               Conread position:161-598
               
               
               Cow position:chr26:1013218-1012753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:320
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):62, 109

               
               
               Conread position:162-825
               
               
               Cow position:chr26:17428820-17429536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 557

               
               
               Conread position:164-551
               
               
               Cow position:chr26:800332-799909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:288
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):58, 364

               
               
               Conread position:164-831
               
               
               Cow position:chr26:17993349-17994060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:450
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):61, 168

               
               
               Conread position:170-502
               
               
               Cow position:chr26:20746868-20746531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 114

               
               
               Conread position:173-405
               
               
               Cow position:chr26:9867713-9867959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):110, 43

               
               
               Conread position:181-834
               
               
               Cow position:chr26:35190912-35191617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 321

               
               
               Conread position:193-819
               
               
               Cow position:chr26:17393276-17393946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 94

               
               
               Conread position:201-834
               
               
               Cow position:chr26:4728711-4729393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 298

               
               
               Conread position:202-775
               
               
               Cow position:chr26:11269828-11269217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 109

               
               
               Conread position:208-834
               
               
               Cow position:chr26:2202129-2201464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 260

               
               
               Conread position:221-636
               
               
               Cow position:chr26:23809841-23810290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):64, 25

               
               
               Conread position:221-799
               
               
               Cow position:chr26:10490824-10490213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 11

               
               
               Conread position:224-825
               
               
               Cow position:chr26:34015421-34014773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 242

               
               
               Conread position:227-645
               
               
               Cow position:chr26:9836052-9835591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:235-806
               
               
               Cow position:chr26:20497100-20496488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 254

               
               
               Conread position:270-644
               
               
               Cow position:chr26:19795583-19795178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:269
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):14, 34

               
               
               Conread position:281-699
               
               
               Cow position:chr26:17182579-17182154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):58, 107

               
               
               Conread position:289-570
               
               
               Cow position:chr26:2740096-2740407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:289-834
               
               
               Cow position:chr26:3700469-3699900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:290-764
               
               
               Cow position:chr26:1885519-1885006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 329

               
               
               Conread position:302-684
               
               
               Cow position:chr26:46153-46572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:302-778
               
               
               Cow position:chr26:20186798-20186295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:332
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):186, 38

               
               
               Conread position:302-800
               
               
               Cow position:chr26:16781672-16781147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 282

               
               
               Conread position:315-834
               
               
               Cow position:chr26:35393612-35394142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:358
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):26, 133

               
               
               Conread position:336-782
               
               
               Cow position:chr26:3537581-3537104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 395

               
               
               Conread position:336-793
               
               
               Cow position:chr26:18800705-18801186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:328
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):51, 143

               
               
               Conread position:341-825
               
               
               Cow position:chr26:9840943-9841461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:351
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):48, 113

               
               
               Conread position:349-825
               
               
               Cow position:chr26:4549056-4548544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 181

               
               
               Conread position:349-839
               
               
               Cow position:chr26:12668879-12668379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 66

               
               
               Conread position:359-822
               
               
               Cow position:chr26:30625183-30625667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 41

               
               
               Conread position:374-824
               
               
               Cow position:chr26:35334795-35335272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 138

               
               
               Conread position:384-778
               
               
               Cow position:chr26:22659887-22660290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):81, 20

               
               
               Conread position:421-806
               
               
               Cow position:chr26:2244141-2244536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 175

               
               
               Conread position:421-834
               
               
               Cow position:chr26:6321470-6321037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 299

               
               
               Conread position:423-834
               
               
               Cow position:chr26:2348808-2349241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 296

               
               
               Conread position:428-718
               
               
               Cow position:chr26:1614481-1614171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):59, 258

               
               
               Conread position:430-832
               
               
               Cow position:chr26:11290501-11290085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):12, 174

               
               
               Conread position:438-831
               
               
               Cow position:chr26:4753395-4752984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:282
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):57, 239

               
               
               Conread position:491-763
               
               
               Cow position:chr26:7506421-7506712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):33, 228

               
               
               Conread position:491-825
               
               
               Cow position:chr26:21535654-21535301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 230

               
               
               Conread position:491-834
               
               
               Cow position:chr26:14897293-14896931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 220

               
               
               Conread position:492-737
               
               
               Cow position:chr26:7381831-7381567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 224

               
               
               Conread position:493-834
               
               
               Cow position:chr26:8654048-8654398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):31, 102

               
               
               Conread position:495-834
               
               
               Cow position:chr26:35520108-35520474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):29, 191

               
               
               Conread position:499-819
               
               
               Cow position:chr26:12258498-12258834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):25, 127

               
               
               Conread position:505-815
               
               
               Cow position:chr26:18934127-18934442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):12, 33

               
               
               Conread position:521-823
               
               
               Cow position:chr26:14364985-14365282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:537-817
               
               
               Cow position:chr26:6030872-6031137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:569-778
               
               
               Cow position:chr26:3199348-3199562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-788
               
               
               Cow position:chr26:18773064-18773288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-818
               
               
               Cow position:chr26:15912841-15912584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 137

               
               
               Conread position:569-825
               
               
               Cow position:chr26:2670574-2670835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):83, 136

               
               
               Conread position:583-825
               
               
               Cow position:chr26:8088253-8088009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):8, 37

               
               
               Conread position:590-834
               
               
               Cow position:chr26:34272249-34272001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:591-834
               
               
               Cow position:chr26:1637858-1638106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-834
               
               
               Cow position:chr26:4122846-4122598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-834
               
               
               Cow position:chr26:6426212-6425962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):57, 116

               
               
               Conread position:593-819
               
               
               Cow position:chr26:23590831-23590600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):54, 78

               
               
               Conread position:604-825
               
               
               Cow position:chr26:21823468-21823686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:605-834
               
               
               Cow position:chr26:3564920-3565148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:616-831
               
               
               Cow position:chr26:19348346-19348562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):30, 87

               
               
               Conread position:619-834
               
               
               Cow position:chr26:31793878-31793658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):16, 84

               
               
               Conread position:624-834
               
               
               Cow position:chr26:3027478-3027687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr26:6844414-6844582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:673-834
               
               
               Cow position:chr26:12869945-12870106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:136
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):158, 23

               
               
               Conread position:689-834
               
               
               Cow position:chr26:22619467-22619323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:711-834
               
               
               Cow position:chr26:30785828-30785705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:712-834
               
               
               Cow position:chr26:27941188-27941066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:716-835
               
               
               Cow position:chr26:25189792-25189673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-834
               
               
               Cow position:chr27:4331013-4331855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:846
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:70-825
               
               
               Cow position:chr27:26330646-26329827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:824
               
               
               Alignm identity:555
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 37

               
               
               Conread position:73-381
               
               
               Cow position:chr27:23454688-23454349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-382
               
               
               Cow position:chr27:8187534-8187204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:73-409
               
               
               Cow position:chr27:10324219-10324590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):71, 35

               
               
               Conread position:73-410
               
               
               Cow position:chr27:12751245-12750871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):71, 34

               
               
               Conread position:73-505
               
               
               Cow position:chr27:9090345-9089878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:317
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):96, 35

               
               
               Conread position:73-522
               
               
               Cow position:chr27:21350560-21350064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:339
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):74, 18

               
               
               Conread position:73-580
               
               
               Cow position:chr27:10384147-10383596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:368
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):9, 35

               
               
               Conread position:73-580
               
               
               Cow position:chr27:13901839-13901272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:384
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-825
               
               
               Cow position:chr27:1189358-1188549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:812
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 35

               
               
               Conread position:73-834
               
               
               Cow position:chr27:165205-166032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:833
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr27:15272361-15273187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:833
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:73-834
               
               
               Cow position:chr27:20811132-20810306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:832
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr27:26856756-26855951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:825
               
               
               Alignm identity:556
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 27

               
               
               Conread position:74-632
               
               
               Cow position:chr27:4819113-4818508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:406
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):69, 16

               
               
               Conread position:78-822
               
               
               Cow position:chr27:8973156-8972343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:820
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 26

               
               
               Conread position:96-537
               
               
               Cow position:chr27:25112844-25112359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:100-685
               
               
               Cow position:chr27:22330165-22329529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:121-332
               
               
               Cow position:chr27:5853400-5853169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):19, 62

               
               
               Conread position:122-622
               
               
               Cow position:chr27:11256034-11256563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:365
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):17, 44

               
               
               Conread position:122-815
               
               
               Cow position:chr27:21452097-21451349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 71

               
               
               Conread position:122-834
               
               
               Cow position:chr27:25800558-25801320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:769
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 341

               
               
               Conread position:123-644
               
               
               Cow position:chr27:13182638-13183183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 289

               
               
               Conread position:139-834
               
               
               Cow position:chr27:27234519-27235220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:142-293
               
               
               Cow position:chr27:12549651-12549811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 18

               
               
               Conread position:142-644
               
               
               Cow position:chr27:15349264-15348742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:142-819
               
               
               Cow position:chr27:5990426-5991140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:143-293
               
               
               Cow position:chr27:8743475-8743627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-293
               
               
               Cow position:chr27:26598418-26598578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):10, 101

               
               
               Conread position:143-337
               
               
               Cow position:chr27:26545383-26545176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-364
               
               
               Cow position:chr27:12190902-12190660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-366
               
               
               Cow position:chr27:30176885-30177130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr27:9989253-9989511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr27:20001188-20001448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-410
               
               
               Cow position:chr27:8262467-8262173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-453
               
               
               Cow position:chr27:791418-791759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr27:3650109-3649768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-479
               
               
               Cow position:chr27:28984394-28984031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):48, 13

               
               
               Conread position:143-506
               
               
               Cow position:chr27:19388562-19388960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):79, 10

               
               
               Conread position:143-540
               
               
               Cow position:chr27:15866673-15867101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:284
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:143-573
               
               
               Cow position:chr27:30036506-30036031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:324
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-580
               
               
               Cow position:chr27:2332128-2331651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-644
               
               
               Cow position:chr27:15033264-15033811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:366
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-692
               
               
               Cow position:chr27:12006776-12006174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-693
               
               
               Cow position:chr27:1502121-1501562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 13

               
               
               Conread position:143-717
               
               
               Cow position:chr27:15871704-15872324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-748
               
               
               Cow position:chr27:25784136-25784782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-759
               
               
               Cow position:chr27:344302-344963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-795
               
               
               Cow position:chr27:22797031-22797732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-797
               
               
               Cow position:chr27:8201564-8200860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-804
               
               
               Cow position:chr27:11434790-11434091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr27:24295632-24296373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr27:26785440-26784716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr27:3231910-3232649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr27:29035754-29036484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr27:29811929-29811216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:144-503
               
               
               Cow position:chr27:16331862-16332243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):78, 116

               
               
               Conread position:144-733
               
               
               Cow position:chr27:12282311-12281684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:145-525
               
               
               Cow position:chr27:26644629-26645042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:289
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:145-528
               
               
               Cow position:chr27:5268972-5268571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:272
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):77, 8

               
               
               Conread position:145-778
               
               
               Cow position:chr27:11490246-11489579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:146-541
               
               
               Cow position:chr27:25676802-25677217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):5, 14

               
               
               Conread position:146-742
               
               
               Cow position:chr27:11481558-11480908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 596

               
               
               Conread position:146-819
               
               
               Cow position:chr27:8427483-8426758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 14

               
               
               Conread position:147-383
               
               
               Cow position:chr27:30777094-30777358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:147-535
               
               
               Cow position:chr27:10306729-10306319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:147-580
               
               
               Cow position:chr27:9333293-9332826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:321
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):12, 291

               
               
               Conread position:147-665
               
               
               Cow position:chr27:9262652-9263216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:360
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 452

               
               
               Conread position:147-755
               
               
               Cow position:chr27:19931931-19932598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 183

               
               
               Conread position:148-387
               
               
               Cow position:chr27:28924504-28924249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 115

               
               
               Conread position:148-410
               
               
               Cow position:chr27:28907610-28907894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-831
               
               
               Cow position:chr27:4982985-4982260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 113

               
               
               Conread position:150-721
               
               
               Cow position:chr27:4805399-4804784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 8

               
               
               Conread position:150-834
               
               
               Cow position:chr27:1521296-1520565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 289

               
               
               Conread position:152-623
               
               
               Cow position:chr27:4665028-4665505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:312
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 227

               
               
               Conread position:153-693
               
               
               Cow position:chr27:6523663-6524254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 96

               
               
               Conread position:153-733
               
               
               Cow position:chr27:8291468-8290832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:430
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):71, 288

               
               
               Conread position:153-849
               
               
               Cow position:chr27:27501806-27501100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:465
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):6, 110

               
               
               Conread position:155-832
               
               
               Cow position:chr27:8727208-8726470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:469
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):47, 41

               
               
               Conread position:156-807
               
               
               Cow position:chr27:27292009-27291299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 559

               
               
               Conread position:156-832
               
               
               Cow position:chr27:9254528-9255249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:454
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):53, 78

               
               
               Conread position:157-410
               
               
               Cow position:chr27:13409613-13409330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:157-834
               
               
               Cow position:chr27:5983416-5984145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 595

               
               
               Conread position:158-335
               
               
               Cow position:chr27:1293861-1293666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr27:8202386-8202632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr27:13422550-13422796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr27:16045344-16045097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:158-411
               
               
               Cow position:chr27:1030940-1031220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:158-452
               
               
               Cow position:chr27:19299952-19300278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:158-504
               
               
               Cow position:chr27:15100253-15099876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:158-562
               
               
               Cow position:chr27:1141309-1140864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:291
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 8

               
               
               Conread position:158-710
               
               
               Cow position:chr27:4824415-4823834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 67

               
               
               Conread position:158-725
               
               
               Cow position:chr27:3653086-3653705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 588

               
               
               Conread position:158-747
               
               
               Cow position:chr27:12277720-12277083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 28

               
               
               Conread position:158-819
               
               
               Cow position:chr27:27557411-27556708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 12

               
               
               Conread position:158-822
               
               
               Cow position:chr27:13353919-13353203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 594

               
               
               Conread position:158-834
               
               
               Cow position:chr27:1081563-1082277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 18

               
               
               Conread position:158-834
               
               
               Cow position:chr27:2001458-2000730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 328

               
               
               Conread position:158-834
               
               
               Cow position:chr27:8959403-8960144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 601

               
               
               Conread position:158-834
               
               
               Cow position:chr27:10579557-10578831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:158-834
               
               
               Cow position:chr27:16030783-16031512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr27:29446491-29447191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 566

               
               
               Conread position:159-302
               
               
               Cow position:chr27:13198457-13198614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:159-710
               
               
               Cow position:chr27:4829121-4828507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:159-834
               
               
               Cow position:chr27:14297818-14297103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 586

               
               
               Conread position:160-744
               
               
               Cow position:chr27:30306654-30307293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 111

               
               
               Conread position:160-768
               
               
               Cow position:chr27:3993727-3994354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:407
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):70, 191

               
               
               Conread position:160-813
               
               
               Cow position:chr27:2557382-2558085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 340

               
               
               Conread position:160-825
               
               
               Cow position:chr27:19523098-19523814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 326

               
               
               Conread position:160-834
               
               
               Cow position:chr27:31249826-31249131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 65

               
               
               Conread position:161-825
               
               
               Cow position:chr27:27728882-27729593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:161-834
               
               
               Cow position:chr27:15406230-15405534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 276

               
               
               Conread position:162-834
               
               
               Cow position:chr27:31268824-31268111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 224

               
               
               Conread position:164-688
               
               
               Cow position:chr27:20765319-20764797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:168-834
               
               
               Cow position:chr27:15633743-15634449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 21

               
               
               Conread position:170-825
               
               
               Cow position:chr27:21283644-21284335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 93

               
               
               Conread position:180-835
               
               
               Cow position:chr27:5925854-5925157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 265

               
               
               Conread position:181-571
               
               
               Cow position:chr27:2682113-2681680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:289
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:186-746
               
               
               Cow position:chr27:19423804-19424405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:392
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):104, 39

               
               
               Conread position:189-710
               
               
               Cow position:chr27:8592956-8592408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 103

               
               
               Conread position:191-581
               
               
               Cow position:chr27:13317136-13316706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:292
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):34, 288

               
               
               Conread position:208-534
               
               
               Cow position:chr27:12239623-12239271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 166

               
               
               Conread position:208-746
               
               
               Cow position:chr27:3990245-3990827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 502

               
               
               Conread position:217-464
               
               
               Cow position:chr27:816216-816486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):19, 246

               
               
               Conread position:221-579
               
               
               Cow position:chr27:9970714-9970320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:264
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:221-630
               
               
               Cow position:chr27:25791996-25792437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:307
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):69, 20

               
               
               Conread position:247-824
               
               
               Cow position:chr27:1536685-1536076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 284

               
               
               Conread position:248-614
               
               
               Cow position:chr27:21392519-21392122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:253-693
               
               
               Cow position:chr27:14669692-14669225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 281

               
               
               Conread position:254-474
               
               
               Cow position:chr27:4834644-4834412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):87, 193

               
               
               Conread position:260-767
               
               
               Cow position:chr27:27930693-27930178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:358
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):10, 178

               
               
               Conread position:262-834
               
               
               Cow position:chr27:5914421-5913824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 456

               
               
               Conread position:273-532
               
               
               Cow position:chr27:2848953-2849210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):63, 148

               
               
               Conread position:277-615
               
               
               Cow position:chr27:24239653-24240003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):62, 141

               
               
               Conread position:277-725
               
               
               Cow position:chr27:14380779-14380315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:303
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):62, 11

               
               
               Conread position:277-834
               
               
               Cow position:chr27:25964487-25965071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:379
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):64, 141

               
               
               Conread position:287-540
               
               
               Cow position:chr27:16787831-16788102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):52, 181

               
               
               Conread position:290-519
               
               
               Cow position:chr27:30677622-30677860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:290-631
               
               
               Cow position:chr27:29467392-29467025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):49, 111

               
               
               Conread position:301-824
               
               
               Cow position:chr27:17568548-17567998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 121

               
               
               Conread position:311-645
               
               
               Cow position:chr27:4811664-4811317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):25, 55

               
               
               Conread position:313-834
               
               
               Cow position:chr27:15375245-15374706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 109

               
               
               Conread position:315-819
               
               
               Cow position:chr27:23317513-23318033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:353
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):26, 128

               
               
               Conread position:315-834
               
               
               Cow position:chr27:27045613-27045068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 276

               
               
               Conread position:325-776
               
               
               Cow position:chr27:27279143-27278669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:324
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):16, 150

               
               
               Conread position:336-631
               
               
               Cow position:chr27:15697757-15697443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):46, 141

               
               
               Conread position:336-819
               
               
               Cow position:chr27:13309058-13308544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 395

               
               
               Conread position:341-834
               
               
               Cow position:chr27:25971191-25971715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 267

               
               
               Conread position:382-796
               
               
               Cow position:chr27:28051422-28051847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 334

               
               
               Conread position:386-825
               
               
               Cow position:chr27:9989843-9990315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:320
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):30, 200

               
               
               Conread position:413-748
               
               
               Cow position:chr27:18473567-18473227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):10, 84

               
               
               Conread position:421-834
               
               
               Cow position:chr27:15544335-15543900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 50

               
               
               Conread position:430-782
               
               
               Cow position:chr27:4768742-4768372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):95, 68

               
               
               Conread position:431-834
               
               
               Cow position:chr27:12750334-12749918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):50, 288

               
               
               Conread position:440-824
               
               
               Cow position:chr27:21203905-21204307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):47, 280

               
               
               Conread position:491-836
               
               
               Cow position:chr27:27849517-27849153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:492-822
               
               
               Cow position:chr27:3760118-3759770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):32, 144

               
               
               Conread position:506-778
               
               
               Cow position:chr27:525878-526157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:506-825
               
               
               Cow position:chr27:27666227-27665895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:519-814
               
               
               Cow position:chr27:21342736-21342434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:521-834
               
               
               Cow position:chr27:27193160-27193476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:522-787
               
               
               Cow position:chr27:28895207-28894940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):126, 13

               
               
               Conread position:538-830
               
               
               Cow position:chr27:17422775-17422481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):8, 40

               
               
               Conread position:554-768
               
               
               Cow position:chr27:219637-219850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):17, 38

               
               
               Conread position:569-825
               
               
               Cow position:chr27:6030921-6030668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 132

               
               
               Conread position:569-834
               
               
               Cow position:chr27:12146488-12146758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:570-834
               
               
               Cow position:chr27:30035974-30035700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):20, 142

               
               
               Conread position:572-802
               
               
               Cow position:chr27:15925767-15926002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):69, 129

               
               
               Conread position:576-825
               
               
               Cow position:chr27:10379334-10379081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):70, 97

               
               
               Conread position:591-825
               
               
               Cow position:chr27:13901027-13900788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):55, 80

               
               
               Conread position:591-834
               
               
               Cow position:chr27:7912113-7911868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):56, 10

               
               
               Conread position:591-834
               
               
               Cow position:chr27:22647773-22648021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):56, 116

               
               
               Conread position:609-815
               
               
               Cow position:chr27:24571688-24571898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:609-834
               
               
               Cow position:chr27:30571944-30571718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):34, 61

               
               
               Conread position:647-834
               
               
               Cow position:chr27:22742343-22742529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:666-825
               
               
               Cow position:chr27:22723407-22723251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):49, 29

               
               
               Conread position:673-822
               
               
               Cow position:chr27:26599958-26599810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:693-834
               
               
               Cow position:chr27:1501586-1501446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:696-834
               
               
               Cow position:chr27:22329237-22329099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr27:773796-773660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr27:18697362-18697226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:701-834
               
               
               Cow position:chr27:20716912-20716779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:704-834
               
               
               Cow position:chr27:15034079-15034208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:712-824
               
               
               Cow position:chr27:8261856-8261744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:716-830
               
               
               Cow position:chr27:8592069-8591955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:719-829
               
               
               Cow position:chr27:9332747-9332638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:1-382
               
               
               Cow position:chr28:28185407-28185005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 73

               
               
               Conread position:1-454
               
               
               Cow position:chr28:10589419-10589912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:333
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):55, 112

               
               
               Conread position:62-382
               
               
               Cow position:chr28:10563167-10562818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 29

               
               
               Conread position:70-822
               
               
               Cow position:chr28:17602280-17603086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:812
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 625

               
               
               Conread position:73-376
               
               
               Cow position:chr28:25767736-25767395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:73-410
               
               
               Cow position:chr28:22322759-22322389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):72, 34

               
               
               Conread position:73-436
               
               
               Cow position:chr28:29199236-29198827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):71, 31

               
               
               Conread position:73-457
               
               
               Cow position:chr28:20964113-20964546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:73-467
               
               
               Cow position:chr28:19194269-19193839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:299
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):20, 53

               
               
               Conread position:73-539
               
               
               Cow position:chr28:25762546-25762077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:338
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):32, 37

               
               
               Conread position:73-556
               
               
               Cow position:chr28:17209224-17209741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:329
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:73-580
               
               
               Cow position:chr28:29222525-29223091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:387
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-635
               
               
               Cow position:chr28:23615915-23615278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:436
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-644
               
               
               Cow position:chr28:2280172-2280775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-644
               
               
               Cow position:chr28:16597909-16597276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:421
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:73-645
               
               
               Cow position:chr28:5805025-5804394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-825
               
               
               Cow position:chr28:5747944-5748766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:827
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-825
               
               
               Cow position:chr28:33256070-33255261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:815
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 38

               
               
               Conread position:73-831
               
               
               Cow position:chr28:10772832-10772019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:826
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 39

               
               
               Conread position:73-834
               
               
               Cow position:chr28:34598002-34597175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:832
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 28

               
               
               Conread position:74-282
               
               
               Cow position:chr28:32717496-32717705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 64

               
               
               Conread position:75-444
               
               
               Cow position:chr28:13865306-13864892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):74, 32

               
               
               Conread position:76-388
               
               
               Cow position:chr28:23839719-23839376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 36

               
               
               Conread position:77-382
               
               
               Cow position:chr28:16387074-16386759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:77-402
               
               
               Cow position:chr28:15272753-15273116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 35

               
               
               Conread position:114-834
               
               
               Cow position:chr28:8717252-8718022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:773
               
               
               Alignm identity:545
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 14

               
               
               Conread position:120-382
               
               
               Cow position:chr28:28116311-28116027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:122-389
               
               
               Cow position:chr28:2522821-2522539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):16, 171

               
               
               Conread position:122-539
               
               
               Cow position:chr28:23868930-23868479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:313
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):18, 28

               
               
               Conread position:122-828
               
               
               Cow position:chr28:29823884-29823123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:765
               
               
               Alignm identity:527
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 419

               
               
               Conread position:128-834
               
               
               Cow position:chr28:17599285-17600054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:776
               
               
               Alignm identity:498
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:139-410
               
               
               Cow position:chr28:25248800-25248500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:139-808
               
               
               Cow position:chr28:30961212-30960503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 57

               
               
               Conread position:142-377
               
               
               Cow position:chr28:25804546-25804290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:142-555
               
               
               Cow position:chr28:5768622-5768175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:311
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:142-718
               
               
               Cow position:chr28:34082595-34083222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:143-329
               
               
               Cow position:chr28:22353785-22353588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:143-337
               
               
               Cow position:chr28:25128563-25128768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-337
               
               
               Cow position:chr28:29726589-29726381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-378
               
               
               Cow position:chr28:25424923-25425174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr28:13889321-13889581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr28:23773684-23773944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:143-387
               
               
               Cow position:chr28:34850823-34850563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 13

               
               
               Conread position:143-446
               
               
               Cow position:chr28:11787288-11787615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-528
               
               
               Cow position:chr28:16211673-16212074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):8, 70

               
               
               Conread position:143-548
               
               
               Cow position:chr28:19300694-19300288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:294
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-551
               
               
               Cow position:chr28:10870763-10870319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:302
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-579
               
               
               Cow position:chr28:14234410-14233960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-580
               
               
               Cow position:chr28:32589373-32588893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:325
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-606
               
               
               Cow position:chr28:29806771-29807275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:347
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:143-622
               
               
               Cow position:chr28:28723892-28723376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:354
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-626
               
               
               Cow position:chr28:1943622-1944151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-627
               
               
               Cow position:chr28:24487721-24488242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:348
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-644
               
               
               Cow position:chr28:10473627-10473093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:362
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-645
               
               
               Cow position:chr28:1198869-1198320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:367
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-698
               
               
               Cow position:chr28:8786980-8786384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-736
               
               
               Cow position:chr28:25409304-25408659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-783
               
               
               Cow position:chr28:9287719-9288411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-791
               
               
               Cow position:chr28:5817276-5816610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 89

               
               
               Conread position:143-811
               
               
               Cow position:chr28:14150661-14149949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-815
               
               
               Cow position:chr28:6535123-6535848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-815
               
               
               Cow position:chr28:7059904-7059180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-819
               
               
               Cow position:chr28:16182022-16181314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-822
               
               
               Cow position:chr28:6959905-6959172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-822
               
               
               Cow position:chr28:7336660-7335926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr28:1957037-1956311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-825
               
               
               Cow position:chr28:4957828-4958569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:752
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr28:5825519-5824775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr28:7005702-7004966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr28:19834772-19834047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr28:20934725-20935473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr28:23309662-23310394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr28:786332-785598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 9

               
               
               Conread position:143-834
               
               
               Cow position:chr28:1508550-1507807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr28:6047465-6046728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr28:10303511-10302772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr28:12650892-12650161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 135

               
               
               Conread position:143-834
               
               
               Cow position:chr28:21380164-21379437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr28:28357111-28357852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr28:33640243-33639501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:143-835
               
               
               Cow position:chr28:4214565-4213823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:144-295
               
               
               Cow position:chr28:7722908-7723063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):81, 12

               
               
               Conread position:144-387
               
               
               Cow position:chr28:10190571-10190830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 12

               
               
               Conread position:144-450
               
               
               Cow position:chr28:13357293-13357623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-528
               
               
               Cow position:chr28:22486141-22485727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:278
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):7, 18

               
               
               Conread position:144-547
               
               
               Cow position:chr28:12406504-12406929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:144-558
               
               
               Cow position:chr28:20310609-20310160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:300
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):76, 12

               
               
               Conread position:144-579
               
               
               Cow position:chr28:13725584-13725130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:310
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:144-834
               
               
               Cow position:chr28:5111051-5111791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 18

               
               
               Conread position:144-834
               
               
               Cow position:chr28:29435132-29435855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:145-466
               
               
               Cow position:chr28:30328254-30328604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):73, 14

               
               
               Conread position:145-744
               
               
               Cow position:chr28:32199069-32198438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:394
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 14

               
               
               Conread position:145-796
               
               
               Cow position:chr28:1383781-1384506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-818
               
               
               Cow position:chr28:26419329-26420053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-823
               
               
               Cow position:chr28:14666803-14666089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-825
               
               
               Cow position:chr28:5211793-5211062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:145-825
               
               
               Cow position:chr28:23793904-23794621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr28:958531-957807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr28:10280499-10279785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:525
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:145-834
               
               
               Cow position:chr28:13463635-13462895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-834
               
               
               Cow position:chr28:15429334-15428604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 11

               
               
               Conread position:146-457
               
               
               Cow position:chr28:12156352-12156008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):13, 288

               
               
               Conread position:146-645
               
               
               Cow position:chr28:3001195-3001731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 13

               
               
               Conread position:146-707
               
               
               Cow position:chr28:32300936-32301532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:389
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):13, 43

               
               
               Conread position:146-834
               
               
               Cow position:chr28:18516472-18517214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 574

               
               
               Conread position:147-290
               
               
               Cow position:chr28:3770573-3770726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:147-374
               
               
               Cow position:chr28:26727994-26728243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):12, 247

               
               
               Conread position:147-382
               
               
               Cow position:chr28:24603598-24603340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-382
               
               
               Cow position:chr28:30532325-30532580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 46

               
               
               Conread position:147-459
               
               
               Cow position:chr28:25726792-25726453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:147-467
               
               
               Cow position:chr28:23544295-23543941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-528
               
               
               Cow position:chr28:15677304-15676890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):78, 14

               
               
               Conread position:147-546
               
               
               Cow position:chr28:24997239-24997679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:306
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):12, 155

               
               
               Conread position:147-611
               
               
               Cow position:chr28:12935601-12936115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 356

               
               
               Conread position:147-722
               
               
               Cow position:chr28:18140059-18140654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 88

               
               
               Conread position:147-788
               
               
               Cow position:chr28:17663277-17663972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 573

               
               
               Conread position:147-799
               
               
               Cow position:chr28:13523351-13522653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 358

               
               
               Conread position:147-819
               
               
               Cow position:chr28:30098548-30097824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 341

               
               
               Conread position:147-820
               
               
               Cow position:chr28:600517-601228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 172

               
               
               Conread position:147-822
               
               
               Cow position:chr28:5941158-5940429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 339

               
               
               Conread position:147-828
               
               
               Cow position:chr28:23675476-23674740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 135

               
               
               Conread position:147-834
               
               
               Cow position:chr28:1811324-1812028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 152

               
               
               Conread position:147-834
               
               
               Cow position:chr28:15032447-15033147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 52

               
               
               Conread position:147-834
               
               
               Cow position:chr28:29035979-29036721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 574

               
               
               Conread position:148-337
               
               
               Cow position:chr28:3012515-3012725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-437
               
               
               Cow position:chr28:24645130-24644810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):72, 13

               
               
               Conread position:148-824
               
               
               Cow position:chr28:21363187-21362455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 125

               
               
               Conread position:148-834
               
               
               Cow position:chr28:26922962-26923698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:150-777
               
               
               Cow position:chr28:14448257-14447593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:419
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):74, 11

               
               
               Conread position:150-834
               
               
               Cow position:chr28:10295456-10294746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 9

               
               
               Conread position:151-815
               
               
               Cow position:chr28:3646090-3645399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 48

               
               
               Conread position:152-382
               
               
               Cow position:chr28:12981142-12981393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):70, 9

               
               
               Conread position:154-834
               
               
               Cow position:chr28:25826448-25827182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 602

               
               
               Conread position:157-834
               
               
               Cow position:chr28:17369714-17369020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 282

               
               
               Conread position:158-293
               
               
               Cow position:chr28:3882503-3882358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr28:332108-331862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr28:15965934-15966180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr28:18559316-18559562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr28:19185883-19185637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr28:22735734-22735499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):64, 135

               
               
               Conread position:158-382
               
               
               Cow position:chr28:27478428-27478182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-394
               
               
               Cow position:chr28:1837406-1837153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):61, 112

               
               
               Conread position:158-439
               
               
               Cow position:chr28:5792116-5791817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):67, 154

               
               
               Conread position:158-453
               
               
               Cow position:chr28:9710494-9710821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr28:12701527-12701200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr28:30031999-30031675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):64, 112

               
               
               Conread position:158-453
               
               
               Cow position:chr28:30249786-30249459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-454
               
               
               Cow position:chr28:615641-615322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):64, 298

               
               
               Conread position:158-467
               
               
               Cow position:chr28:7830221-7829876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):56, 11

               
               
               Conread position:158-512
               
               
               Cow position:chr28:6319491-6319873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):64, 224

               
               
               Conread position:158-528
               
               
               Cow position:chr28:5336145-5336550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:283
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):64, 343

               
               
               Conread position:158-555
               
               
               Cow position:chr28:7888425-7888852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):64, 329

               
               
               Conread position:158-578
               
               
               Cow position:chr28:34878790-34879244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:302
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):66, 235

               
               
               Conread position:158-580
               
               
               Cow position:chr28:2222706-2223172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:314
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):68, 117

               
               
               Conread position:158-580
               
               
               Cow position:chr28:25829055-25828589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:319
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-595
               
               
               Cow position:chr28:12429863-12429383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 29

               
               
               Conread position:158-675
               
               
               Cow position:chr28:34655744-34655205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):17, 254

               
               
               Conread position:158-693
               
               
               Cow position:chr28:25847658-25847094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:367
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):59, 47

               
               
               Conread position:158-708
               
               
               Cow position:chr28:30870731-30870137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 9

               
               
               Conread position:158-777
               
               
               Cow position:chr28:17030437-17031102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 330

               
               
               Conread position:158-811
               
               
               Cow position:chr28:22201602-22200920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:448
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):65, 40

               
               
               Conread position:158-829
               
               
               Cow position:chr28:7906887-7907608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 349

               
               
               Conread position:158-834
               
               
               Cow position:chr28:445059-444339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 67

               
               
               Conread position:158-834
               
               
               Cow position:chr28:482050-482777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 593

               
               
               Conread position:158-834
               
               
               Cow position:chr28:2645373-2644646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 269

               
               
               Conread position:158-834
               
               
               Cow position:chr28:3745609-3744903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 52

               
               
               Conread position:158-834
               
               
               Cow position:chr28:5637710-5636982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 491

               
               
               Conread position:158-834
               
               
               Cow position:chr28:6478878-6478152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 350

               
               
               Conread position:158-834
               
               
               Cow position:chr28:9182529-9181802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr28:20967009-20967738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr28:23620591-23619896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 11

               
               
               Conread position:158-834
               
               
               Cow position:chr28:24886519-24885792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-834
               
               
               Cow position:chr28:28471677-28470954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 91

               
               
               Conread position:158-834
               
               
               Cow position:chr28:28934303-28935032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 597

               
               
               Conread position:158-834
               
               
               Cow position:chr28:34731391-34730665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 228

               
               
               Conread position:160-369
               
               
               Cow position:chr28:2948946-2948726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):61, 14

               
               
               Conread position:160-387
               
               
               Cow position:chr28:9419946-9420191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:160-410
               
               
               Cow position:chr28:2422367-2422090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-540
               
               
               Cow position:chr28:23800917-23800509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):63, 14

               
               
               Conread position:160-540
               
               
               Cow position:chr28:28635740-28635346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:253
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):60, 84

               
               
               Conread position:160-631
               
               
               Cow position:chr28:12165846-12166360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:348
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):65, 231

               
               
               Conread position:160-645
               
               
               Cow position:chr28:24993145-24992612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-686
               
               
               Cow position:chr28:5117554-5116987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:341
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):71, 279

               
               
               Conread position:160-746
               
               
               Cow position:chr28:18145077-18145682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:396
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):65, 351

               
               
               Conread position:160-786
               
               
               Cow position:chr28:22090864-22091523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:416
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:160-805
               
               
               Cow position:chr28:21618161-21617493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:421
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 216

               
               
               Conread position:160-806
               
               
               Cow position:chr28:32764855-32764181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:417
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):33, 61

               
               
               Conread position:160-815
               
               
               Cow position:chr28:30966863-30966159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:464
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):62, 235

               
               
               Conread position:160-823
               
               
               Cow position:chr28:11501570-11502274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 164

               
               
               Conread position:160-824
               
               
               Cow position:chr28:24499701-24498991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 48

               
               
               Conread position:160-830
               
               
               Cow position:chr28:21569546-21568839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 80

               
               
               Conread position:160-834
               
               
               Cow position:chr28:3068531-3067822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 187

               
               
               Conread position:160-834
               
               
               Cow position:chr28:14492969-14492267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 325

               
               
               Conread position:160-834
               
               
               Cow position:chr28:15916869-15917594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 9

               
               
               Conread position:160-834
               
               
               Cow position:chr28:25070503-25069773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 563

               
               
               Conread position:161-394
               
               
               Cow position:chr28:10530068-10530324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:161-803
               
               
               Cow position:chr28:22580677-22580010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:439
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):58, 306

               
               
               Conread position:162-466
               
               
               Cow position:chr28:12226864-12227192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 7

               
               
               Conread position:162-781
               
               
               Cow position:chr28:17744682-17745342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:423
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):56, 226

               
               
               Conread position:163-824
               
               
               Cow position:chr28:24301708-24302403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:443
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):59, 391

               
               
               Conread position:163-834
               
               
               Cow position:chr28:13607086-13606372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 346

               
               
               Conread position:164-808
               
               
               Cow position:chr28:6473604-6474294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 579

               
               
               Conread position:166-427
               
               
               Cow position:chr28:13693131-13692840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:167-512
               
               
               Cow position:chr28:7981312-7981687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:169-387
               
               
               Cow position:chr28:22501082-22501305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):17, 171

               
               
               Conread position:169-834
               
               
               Cow position:chr28:15054805-15054091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 580

               
               
               Conread position:170-834
               
               
               Cow position:chr28:34677566-34678262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 163

               
               
               Conread position:172-410
               
               
               Cow position:chr28:2123200-2122942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):58, 96

               
               
               Conread position:172-722
               
               
               Cow position:chr28:5773052-5772471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:391
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):52, 40

               
               
               Conread position:172-788
               
               
               Cow position:chr28:21896927-21896259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 169

               
               
               Conread position:180-540
               
               
               Cow position:chr28:3188379-3188776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):42, 253

               
               
               Conread position:183-794
               
               
               Cow position:chr28:10162854-10162217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 187

               
               
               Conread position:186-829
               
               
               Cow position:chr28:3627645-3626952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 322

               
               
               Conread position:186-834
               
               
               Cow position:chr28:25850190-25849492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 564

               
               
               Conread position:189-468
               
               
               Cow position:chr28:4069575-4069272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:189-522
               
               
               Cow position:chr28:10578467-10578836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:249
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:190-644
               
               
               Cow position:chr28:10642916-10643397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:331
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):33, 233

               
               
               Conread position:201-788
               
               
               Cow position:chr28:17392050-17391410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 554

               
               
               Conread position:201-824
               
               
               Cow position:chr28:15600158-15600793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 95

               
               
               Conread position:201-825
               
               
               Cow position:chr28:32785823-32786486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 139

               
               
               Conread position:203-444
               
               
               Cow position:chr28:13473225-13472952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:208-793
               
               
               Cow position:chr28:7744706-7744075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 403

               
               
               Conread position:208-834
               
               
               Cow position:chr28:6776402-6777072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 536

               
               
               Conread position:208-834
               
               
               Cow position:chr28:22254600-22255267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 269

               
               
               Conread position:213-779
               
               
               Cow position:chr28:10479304-10479902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 260

               
               
               Conread position:215-769
               
               
               Cow position:chr28:21104385-21104973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 7

               
               
               Conread position:221-458
               
               
               Cow position:chr28:14740984-14740743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):9, 68

               
               
               Conread position:221-834
               
               
               Cow position:chr28:14512020-14511379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:226-832
               
               
               Cow position:chr28:4045774-4045153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:393
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):113, 40

               
               
               Conread position:227-466
               
               
               Cow position:chr28:15497910-15498153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):106, 26

               
               
               Conread position:229-807
               
               
               Cow position:chr28:32277136-32276513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:389
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):68, 143

               
               
               Conread position:235-825
               
               
               Cow position:chr28:20411324-20410682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 70

               
               
               Conread position:243-768
               
               
               Cow position:chr28:13323698-13323130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 500

               
               
               Conread position:243-769
               
               
               Cow position:chr28:10194040-10194609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 500

               
               
               Conread position:248-635
               
               
               Cow position:chr28:15687841-15687436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:260
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:248-834
               
               
               Cow position:chr28:4928904-4929519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 115

               
               
               Conread position:258-834
               
               
               Cow position:chr28:4457876-4457256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:403
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):34, 484

               
               
               Conread position:267-693
               
               
               Cow position:chr28:7784688-7785148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:313
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):26, 369

               
               
               Conread position:271-784
               
               
               Cow position:chr28:29473520-29472971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:363
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):74, 300

               
               
               Conread position:286-802
               
               
               Cow position:chr28:21767790-21768330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 135

               
               
               Conread position:290-825
               
               
               Cow position:chr28:12998187-12997625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 319

               
               
               Conread position:290-831
               
               
               Cow position:chr28:1024823-1025397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 293

               
               
               Conread position:290-834
               
               
               Cow position:chr28:15351614-15352186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:372
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):49, 195

               
               
               Conread position:291-815
               
               
               Cow position:chr28:24620355-24620894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:361
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):57, 184

               
               
               Conread position:293-834
               
               
               Cow position:chr28:6230189-6230760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:376
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):46, 127

               
               
               Conread position:295-548
               
               
               Cow position:chr28:15715476-15715204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):46, 170

               
               
               Conread position:297-812
               
               
               Cow position:chr28:14229483-14230000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:343
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:299-829
               
               
               Cow position:chr28:10326556-10325997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:352
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):38, 122

               
               
               Conread position:305-834
               
               
               Cow position:chr28:6471946-6472506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:311-834
               
               
               Cow position:chr28:5312463-5311905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 424

               
               
               Conread position:340-801
               
               
               Cow position:chr28:1778015-1777526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:328
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):33, 93

               
               
               Conread position:340-832
               
               
               Cow position:chr28:32730580-32731079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 34

               
               
               Conread position:342-825
               
               
               Cow position:chr28:3004065-3004581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 7

               
               
               Conread position:345-803
               
               
               Cow position:chr28:26563617-26563147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:304
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 122

               
               
               Conread position:380-645
               
               
               Cow position:chr28:8971485-8971202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):32, 67

               
               
               Conread position:421-685
               
               
               Cow position:chr28:331534-331821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):9, 28

               
               
               Conread position:421-821
               
               
               Cow position:chr28:16041298-16041708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 93

               
               
               Conread position:421-825
               
               
               Cow position:chr28:5572009-5571579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:295
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):9, 110

               
               
               Conread position:421-825
               
               
               Cow position:chr28:15589440-15589009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:291
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):9, 44

               
               
               Conread position:421-829
               
               
               Cow position:chr28:28929198-28928773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 41

               
               
               Conread position:421-834
               
               
               Cow position:chr28:7443103-7443538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr28:12216923-12217358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr28:15604983-15604542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 307

               
               
               Conread position:421-834
               
               
               Cow position:chr28:22229966-22230398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):9, 296

               
               
               Conread position:423-825
               
               
               Cow position:chr28:28184756-28184325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 272

               
               
               Conread position:430-825
               
               
               Cow position:chr28:13880883-13880463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):44, 296

               
               
               Conread position:431-815
               
               
               Cow position:chr28:7654278-7654668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):52, 109

               
               
               Conread position:434-598
               
               
               Cow position:chr28:1837140-1836965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):45, 94

               
               
               Conread position:435-825
               
               
               Cow position:chr28:12047189-12047596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:278
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):50, 246

               
               
               Conread position:440-834
               
               
               Cow position:chr28:30304665-30305077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:288
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):53, 249

               
               
               Conread position:452-677
               
               
               Cow position:chr28:30328812-30329046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):27, 222

               
               
               Conread position:476-834
               
               
               Cow position:chr28:1197436-1197045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):49, 243

               
               
               Conread position:491-834
               
               
               Cow position:chr28:1214547-1214899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):9, 48

               
               
               Conread position:491-834
               
               
               Cow position:chr28:7829799-7829438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 220

               
               
               Conread position:491-834
               
               
               Cow position:chr28:12155134-12154775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):34, 194

               
               
               Conread position:491-834
               
               
               Cow position:chr28:34583217-34582855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 230

               
               
               Conread position:493-814
               
               
               Cow position:chr28:24671085-24670745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 223

               
               
               Conread position:498-834
               
               
               Cow position:chr28:2662675-2663027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):32, 116

               
               
               Conread position:505-825
               
               
               Cow position:chr28:2088843-2088514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):8, 30

               
               
               Conread position:505-825
               
               
               Cow position:chr28:30533787-30534120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):10, 32

               
               
               Conread position:505-828
               
               
               Cow position:chr28:30369202-30368885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:507-824
               
               
               Cow position:chr28:5791245-5791573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):8, 28

               
               
               Conread position:510-818
               
               
               Cow position:chr28:979990-980317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):14, 134

               
               
               Conread position:521-785
               
               
               Cow position:chr28:22553775-22553505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):50, 14

               
               
               Conread position:521-805
               
               
               Cow position:chr28:17249334-17249621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):51, 13

               
               
               Conread position:527-779
               
               
               Cow position:chr28:26717984-26717718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):12, 186

               
               
               Conread position:537-849
               
               
               Cow position:chr28:25596141-25595820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 170

               
               
               Conread position:539-831
               
               
               Cow position:chr28:31848698-31848994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):21, 168

               
               
               Conread position:545-815
               
               
               Cow position:chr28:32343886-32343612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):56, 38

               
               
               Conread position:568-829
               
               
               Cow position:chr28:1164689-1164953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):80, 41

               
               
               Conread position:569-788
               
               
               Cow position:chr28:34880338-34880112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):66, 135

               
               
               Conread position:569-804
               
               
               Cow position:chr28:25762085-25761850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):79, 129

               
               
               Conread position:569-825
               
               
               Cow position:chr28:5569565-5569310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):79, 136

               
               
               Conread position:569-832
               
               
               Cow position:chr28:10590159-10590428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):77, 105

               
               
               Conread position:569-834
               
               
               Cow position:chr28:3652440-3652178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):78, 98

               
               
               Conread position:571-834
               
               
               Cow position:chr28:3188832-3189100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):75, 100

               
               
               Conread position:591-770
               
               
               Cow position:chr28:32588119-32588303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-834
               
               
               Cow position:chr28:24592051-24591805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:599-808
               
               
               Cow position:chr28:2414703-2414493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):47, 10

               
               
               Conread position:601-834
               
               
               Cow position:chr28:34606760-34606525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 100

               
               
               Conread position:606-834
               
               
               Cow position:chr28:1836908-1836674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):37, 97

               
               
               Conread position:609-825
               
               
               Cow position:chr28:12936249-12936471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):37, 62

               
               
               Conread position:621-834
               
               
               Cow position:chr28:5336709-5336928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):26, 79

               
               
               Conread position:624-787
               
               
               Cow position:chr28:12227438-12227600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 49

               
               
               Conread position:644-834
               
               
               Cow position:chr28:25563528-25563339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:645-804
               
               
               Cow position:chr28:5867594-5867436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:645-834
               
               
               Cow position:chr28:12170463-12170654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):133, 50

               
               
               Conread position:649-824
               
               
               Cow position:chr28:25796409-25796587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):117, 15

               
               
               Conread position:666-802
               
               
               Cow position:chr28:21767648-21767783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:666-825
               
               
               Cow position:chr28:7547833-7547675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr28:12407116-12407283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:667-808
               
               
               Cow position:chr28:22498401-22498263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:671-846
               
               
               Cow position:chr28:4376292-4376466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:696-811
               
               
               Cow position:chr28:10643421-10643537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:704-824
               
               
               Cow position:chr28:3012745-3012861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:707-834
               
               
               Cow position:chr28:22040352-22040477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:1-382
               
               
               Cow position:chr29:28621672-28622081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):93, 78

               
               
               Conread position:1-834
               
               
               Cow position:chr29:30432386-30433291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:909
               
               
               Alignm identity:618
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 113

               
               
               Conread position:69-633
               
               
               Cow position:chr29:27823827-27823238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 38

               
               
               Conread position:73-221
               
               
               Cow position:chr29:24659600-24659750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 39

               
               
               Conread position:73-388
               
               
               Cow position:chr29:29056680-29056338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:73-410
               
               
               Cow position:chr29:24420925-24420554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-478
               
               
               Cow position:chr29:18364908-18365344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 31

               
               
               Conread position:73-522
               
               
               Cow position:chr29:35076863-35076357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:346
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:73-551
               
               
               Cow position:chr29:19524408-19524939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:359
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:73-631
               
               
               Cow position:chr29:16185046-16185669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:413
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:73-632
               
               
               Cow position:chr29:1688467-1687857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:405
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:73-644
               
               
               Cow position:chr29:13849259-13849851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:380
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):19, 40

               
               
               Conread position:73-644
               
               
               Cow position:chr29:38229733-38229104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-725
               
               
               Cow position:chr29:13623641-13624363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-807
               
               
               Cow position:chr29:21535191-21535979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:801
               
               
               Alignm identity:512
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):32, 40

               
               
               Conread position:73-825
               
               
               Cow position:chr29:45208230-45207423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:821
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:73-834
               
               
               Cow position:chr29:3330315-3329495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:825
               
               
               Alignm identity:558
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 40

               
               
               Conread position:73-834
               
               
               Cow position:chr29:5241128-5240296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:837
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:73-834
               
               
               Cow position:chr29:7811465-7812295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:834
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:73-834
               
               
               Cow position:chr29:8623503-8624294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:802
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 36

               
               
               Conread position:73-834
               
               
               Cow position:chr29:14207835-14208654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:831
               
               
               Alignm identity:558
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:73-834
               
               
               Cow position:chr29:17408836-17408031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:821
               
               
               Alignm identity:540
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 39

               
               
               Conread position:74-508
               
               
               Cow position:chr29:19761774-19761307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 36

               
               
               Conread position:77-404
               
               
               Cow position:chr29:16195338-16194969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:254
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):62, 153

               
               
               Conread position:77-630
               
               
               Cow position:chr29:43692454-43691872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:392
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):15, 28

               
               
               Conread position:84-644
               
               
               Cow position:chr29:35739009-35739593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:379
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):11, 18

               
               
               Conread position:108-452
               
               
               Cow position:chr29:87536-87911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:256
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):41, 20

               
               
               Conread position:109-465
               
               
               Cow position:chr29:8589055-8589450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:120-452
               
               
               Cow position:chr29:14116483-14116122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 265

               
               
               Conread position:122-413
               
               
               Cow position:chr29:4120292-4119972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 314

               
               
               Conread position:139-387
               
               
               Cow position:chr29:7666611-7666876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:142-451
               
               
               Cow position:chr29:32942293-32941951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):9, 117

               
               
               Conread position:142-802
               
               
               Cow position:chr29:32800914-32800203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 14

               
               
               Conread position:142-834
               
               
               Cow position:chr29:7848037-7847291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:143-335
               
               
               Cow position:chr29:8667225-8667022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-359
               
               
               Cow position:chr29:15719849-15719617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-381
               
               
               Cow position:chr29:10154679-10154418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr29:2520991-2520739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr29:16347856-16347597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr29:17458509-17458769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr29:19857102-19856843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr29:44020251-44020508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-383
               
               
               Cow position:chr29:2463269-2463526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-410
               
               
               Cow position:chr29:528875-529165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr29:2461801-2461460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr29:32329615-32329956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-457
               
               
               Cow position:chr29:11136463-11136807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:246
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:143-468
               
               
               Cow position:chr29:2694345-2693990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:255
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-495
               
               
               Cow position:chr29:4519387-4518995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 13

               
               
               Conread position:143-527
               
               
               Cow position:chr29:4875493-4875904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-579
               
               
               Cow position:chr29:2402331-2401854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:322
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-580
               
               
               Cow position:chr29:11119067-11119547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:325
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-630
               
               
               Cow position:chr29:10159112-10159604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:339
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-644
               
               
               Cow position:chr29:9638893-9639433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-644
               
               
               Cow position:chr29:13129007-13129525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:349
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):16, 114

               
               
               Conread position:143-644
               
               
               Cow position:chr29:38349717-38350258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 16

               
               
               Conread position:143-645
               
               
               Cow position:chr29:18011216-18010671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:369
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:143-765
               
               
               Cow position:chr29:32732743-32732072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-822
               
               
               Cow position:chr29:6262365-6263094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-822
               
               
               Cow position:chr29:10452174-10452901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:143-825
               
               
               Cow position:chr29:44824-45549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr29:1479096-1478363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 16

               
               
               Conread position:143-825
               
               
               Cow position:chr29:32556102-32556833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-825
               
               
               Cow position:chr29:45650906-45651639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-830
               
               
               Cow position:chr29:19514694-19515437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr29:727374-726631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr29:2103486-2102749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr29:2744859-2745596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:143-834
               
               
               Cow position:chr29:6218173-6218894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr29:13027848-13027124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr29:15965909-15966652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr29:26161185-26161933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 284

               
               
               Conread position:143-834
               
               
               Cow position:chr29:28656728-28657466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:143-834
               
               
               Cow position:chr29:32292239-32291498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr29:32353240-32352520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr29:32515973-32515227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr29:45462876-45462135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:144-635
               
               
               Cow position:chr29:649681-649158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:364
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-769
               
               
               Cow position:chr29:27310042-27310685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 20

               
               
               Conread position:144-788
               
               
               Cow position:chr29:34120871-34121557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:434
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:144-834
               
               
               Cow position:chr29:32808003-32807283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 12

               
               
               Conread position:145-404
               
               
               Cow position:chr29:41183539-41183823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:145-527
               
               
               Cow position:chr29:13652697-13652294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):73, 11

               
               
               Conread position:145-540
               
               
               Cow position:chr29:21167910-21167484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-585
               
               
               Cow position:chr29:26263263-26262783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 11

               
               
               Conread position:145-709
               
               
               Cow position:chr29:36209338-36208724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:145-825
               
               
               Cow position:chr29:32290031-32289302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:145-831
               
               
               Cow position:chr29:13058346-13057651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr29:10820072-10820813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:145-834
               
               
               Cow position:chr29:12798227-12797489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:543
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:146-331
               
               
               Cow position:chr29:406851-407030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 78

               
               
               Conread position:146-337
               
               
               Cow position:chr29:35291299-35291097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:146-579
               
               
               Cow position:chr29:26289673-26290135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:303
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):13, 134

               
               
               Conread position:146-822
               
               
               Cow position:chr29:22280014-22279288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 14

               
               
               Conread position:147-337
               
               
               Cow position:chr29:16097896-16098105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-405
               
               
               Cow position:chr29:35434280-35433995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-415
               
               
               Cow position:chr29:13590300-13590595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):12, 289

               
               
               Conread position:147-452
               
               
               Cow position:chr29:40096170-40095837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):12, 160

               
               
               Conread position:147-453
               
               
               Cow position:chr29:19398302-19397964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-458
               
               
               Cow position:chr29:26128863-26129192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 134

               
               
               Conread position:147-536
               
               
               Cow position:chr29:32806708-32806284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:286
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:147-547
               
               
               Cow position:chr29:7290186-7289753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:147-558
               
               
               Cow position:chr29:34806194-34806630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:294
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:147-685
               
               
               Cow position:chr29:7427498-7428092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-741
               
               
               Cow position:chr29:11365659-11365017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:418
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):12, 36

               
               
               Conread position:147-756
               
               
               Cow position:chr29:7605044-7604372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:441
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):12, 401

               
               
               Conread position:147-818
               
               
               Cow position:chr29:9079161-9079880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 333

               
               
               Conread position:147-822
               
               
               Cow position:chr29:28696738-28697464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 501

               
               
               Conread position:147-824
               
               
               Cow position:chr29:34737064-34737781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 14

               
               
               Conread position:147-825
               
               
               Cow position:chr29:10643772-10644500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 605

               
               
               Conread position:147-825
               
               
               Cow position:chr29:34794215-34794952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 614

               
               
               Conread position:147-834
               
               
               Cow position:chr29:6216698-6215993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:431
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 57

               
               
               Conread position:147-834
               
               
               Cow position:chr29:19619626-19620366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 503

               
               
               Conread position:147-834
               
               
               Cow position:chr29:19657524-19656802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 488

               
               
               Conread position:148-458
               
               
               Cow position:chr29:32175899-32175583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):11, 86

               
               
               Conread position:148-693
               
               
               Cow position:chr29:40498238-40498833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 497

               
               
               Conread position:150-283
               
               
               Cow position:chr29:40338161-40338303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):72, 8

               
               
               Conread position:150-387
               
               
               Cow position:chr29:23984543-23984782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):128, 8

               
               
               Conread position:150-407
               
               
               Cow position:chr29:4001822-4001548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):40, 9

               
               
               Conread position:153-488
               
               
               Cow position:chr29:27814412-27814055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):69, 88

               
               
               Conread position:153-627
               
               
               Cow position:chr29:14313513-14314035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 349

               
               
               Conread position:153-834
               
               
               Cow position:chr29:20254800-20254069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 125

               
               
               Conread position:154-452
               
               
               Cow position:chr29:4480759-4481082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):70, 230

               
               
               Conread position:157-833
               
               
               Cow position:chr29:22949276-22949992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 7

               
               
               Conread position:158-382
               
               
               Cow position:chr29:527206-527452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr29:4610992-4610749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr29:15570165-15569918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr29:15755536-15755782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-387
               
               
               Cow position:chr29:22935682-22935427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:158-398
               
               
               Cow position:chr29:14051023-14051283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:158-411
               
               
               Cow position:chr29:10652739-10652459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-413
               
               
               Cow position:chr29:16012345-16012618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):72, 30

               
               
               Conread position:158-440
               
               
               Cow position:chr29:14568927-14568617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-442
               
               
               Cow position:chr29:15698826-15699142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-442
               
               
               Cow position:chr29:29565708-29566026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:158-447
               
               
               Cow position:chr29:31093931-31094252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr29:13923709-13923382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):63, 113

               
               
               Conread position:158-467
               
               
               Cow position:chr29:27630312-27630638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):66, 112

               
               
               Conread position:158-528
               
               
               Cow position:chr29:1743130-1742730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:273
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-540
               
               
               Cow position:chr29:5786125-5785705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-540
               
               
               Cow position:chr29:10032022-10032443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:290
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr29:34851385-34850922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:312
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):64, 303

               
               
               Conread position:158-580
               
               
               Cow position:chr29:40116953-40116469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:336
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:158-614
               
               
               Cow position:chr29:24982940-24983440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:332
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):64, 277

               
               
               Conread position:158-645
               
               
               Cow position:chr29:34780354-34780890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:357
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):61, 330

               
               
               Conread position:158-645
               
               
               Cow position:chr29:38409827-38409291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 109

               
               
               Conread position:158-736
               
               
               Cow position:chr29:40294938-40294310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 589

               
               
               Conread position:158-751
               
               
               Cow position:chr29:27702708-27702062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 589

               
               
               Conread position:158-777
               
               
               Cow position:chr29:40157375-40156702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 597

               
               
               Conread position:158-786
               
               
               Cow position:chr29:24578256-24577605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 40

               
               
               Conread position:158-806
               
               
               Cow position:chr29:40618224-40618908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 335

               
               
               Conread position:158-825
               
               
               Cow position:chr29:7724292-7723589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 426

               
               
               Conread position:158-825
               
               
               Cow position:chr29:21429233-21429949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 591

               
               
               Conread position:158-826
               
               
               Cow position:chr29:31765670-31764950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-831
               
               
               Cow position:chr29:21255593-21254862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 404

               
               
               Conread position:158-834
               
               
               Cow position:chr29:607017-607735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 381

               
               
               Conread position:158-834
               
               
               Cow position:chr29:4164319-4163590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr29:15943971-15943255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 144

               
               
               Conread position:158-834
               
               
               Cow position:chr29:16065340-16064613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 129

               
               
               Conread position:158-834
               
               
               Cow position:chr29:19891193-19890457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 96

               
               
               Conread position:158-834
               
               
               Cow position:chr29:21227606-21226879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 573

               
               
               Conread position:158-834
               
               
               Cow position:chr29:21474780-21474051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr29:31185007-31184278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr29:32962938-32962217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:544
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 319

               
               
               Conread position:158-834
               
               
               Cow position:chr29:42255348-42256076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:159-825
               
               
               Cow position:chr29:13585834-13585127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:159-825
               
               
               Cow position:chr29:35955694-35956391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 137

               
               
               Conread position:160-337
               
               
               Cow position:chr29:5550399-5550204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:160-410
               
               
               Cow position:chr29:31786101-31785839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):57, 237

               
               
               Conread position:160-527
               
               
               Cow position:chr29:3106916-3106532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):65, 45

               
               
               Conread position:160-632
               
               
               Cow position:chr29:5977699-5978209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:343
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):45, 185

               
               
               Conread position:160-824
               
               
               Cow position:chr29:21546119-21546831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:462
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):61, 480

               
               
               Conread position:160-829
               
               
               Cow position:chr29:42807609-42806899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:160-834
               
               
               Cow position:chr29:6935112-6934393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 510

               
               
               Conread position:160-834
               
               
               Cow position:chr29:45626964-45626247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 160

               
               
               Conread position:161-528
               
               
               Cow position:chr29:30106232-30106619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 61

               
               
               Conread position:161-635
               
               
               Cow position:chr29:2298698-2299196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:339
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):28, 117

               
               
               Conread position:161-704
               
               
               Cow position:chr29:16051746-16052319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:376
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):61, 133

               
               
               Conread position:161-825
               
               
               Cow position:chr29:32543761-32543048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 51

               
               
               Conread position:162-480
               
               
               Cow position:chr29:133583-133250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 20

               
               
               Conread position:162-829
               
               
               Cow position:chr29:10237031-10237762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 599

               
               
               Conread position:163-815
               
               
               Cow position:chr29:17153876-17153172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 84

               
               
               Conread position:165-747
               
               
               Cow position:chr29:11786629-11785993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 586

               
               
               Conread position:166-834
               
               
               Cow position:chr29:35265540-35264819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 587

               
               
               Conread position:172-825
               
               
               Cow position:chr29:35273421-35274118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 584

               
               
               Conread position:183-834
               
               
               Cow position:chr29:2837730-2838434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 574

               
               
               Conread position:189-540
               
               
               Cow position:chr29:960798-960412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):33, 85

               
               
               Conread position:189-834
               
               
               Cow position:chr29:23980305-23979613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 560

               
               
               Conread position:189-834
               
               
               Cow position:chr29:39076119-39076816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 567

               
               
               Conread position:208-528
               
               
               Cow position:chr29:13128970-13128635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):28, 223

               
               
               Conread position:208-807
               
               
               Cow position:chr29:20971973-20972614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:413
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):30, 109

               
               
               Conread position:208-834
               
               
               Cow position:chr29:25928937-25929617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 538

               
               
               Conread position:208-834
               
               
               Cow position:chr29:43327088-43326413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 540

               
               
               Conread position:218-825
               
               
               Cow position:chr29:5389560-5390158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):334, 434

               
               
               Conread position:222-510
               
               
               Cow position:chr29:10297306-10297617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:224-645
               
               
               Cow position:chr29:20999758-20999333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 51

               
               
               Conread position:232-834
               
               
               Cow position:chr29:35002127-35002755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 346

               
               
               Conread position:235-624
               
               
               Cow position:chr29:5961547-5961122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:276
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:235-801
               
               
               Cow position:chr29:7664458-7665062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 502

               
               
               Conread position:235-834
               
               
               Cow position:chr29:4200933-4200292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 485

               
               
               Conread position:241-540
               
               
               Cow position:chr29:27259345-27259674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):46, 10

               
               
               Conread position:255-831
               
               
               Cow position:chr29:15941503-15942129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:410
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):33, 205

               
               
               Conread position:256-834
               
               
               Cow position:chr29:4217802-4217219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 29

               
               
               Conread position:263-828
               
               
               Cow position:chr29:40418180-40418762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:383
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):76, 22

               
               
               Conread position:266-816
               
               
               Cow position:chr29:7748208-7748780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:360
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):70, 98

               
               
               Conread position:268-715
               
               
               Cow position:chr29:36633856-36634328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:330
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):69, 210

               
               
               Conread position:270-831
               
               
               Cow position:chr29:1576500-1577069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:271-832
               
               
               Cow position:chr29:7700891-7701461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 94

               
               
               Conread position:281-823
               
               
               Cow position:chr29:43964070-43964640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:380
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):58, 240

               
               
               Conread position:288-834
               
               
               Cow position:chr29:4864803-4864234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 406

               
               
               Conread position:290-630
               
               
               Cow position:chr29:27858033-27857683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):66, 9

               
               
               Conread position:290-698
               
               
               Cow position:chr29:13099653-13099206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:298
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):49, 413

               
               
               Conread position:290-825
               
               
               Cow position:chr29:3584737-3585298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 168

               
               
               Conread position:292-634
               
               
               Cow position:chr29:6871804-6872166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:245
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):25, 156

               
               
               Conread position:292-692
               
               
               Cow position:chr29:15072002-15072438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:294
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):47, 183

               
               
               Conread position:292-815
               
               
               Cow position:chr29:10248208-10248762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:354
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):47, 76

               
               
               Conread position:292-834
               
               
               Cow position:chr29:24806934-24806358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 443

               
               
               Conread position:293-644
               
               
               Cow position:chr29:40954416-40954798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:298-528
               
               
               Cow position:chr29:24951942-24951696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:310-834
               
               
               Cow position:chr29:16035956-16036515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 425

               
               
               Conread position:311-831
               
               
               Cow position:chr29:18522974-18523523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 29

               
               
               Conread position:311-834
               
               
               Cow position:chr29:22746360-22745802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 424

               
               
               Conread position:341-626
               
               
               Cow position:chr29:4366584-4366281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 7

               
               
               Conread position:341-815
               
               
               Cow position:chr29:8891834-8892328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:315
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:344-808
               
               
               Cow position:chr29:9963868-9963385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:310
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 175

               
               
               Conread position:348-796
               
               
               Cow position:chr29:16101699-16102177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:322
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):37, 348

               
               
               Conread position:348-796
               
               
               Cow position:chr29:25480062-25479593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:310
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):71, 20

               
               
               Conread position:356-785
               
               
               Cow position:chr29:34331017-34331478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:307
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):34, 373

               
               
               Conread position:375-785
               
               
               Cow position:chr29:29589608-29590036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:291
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):44, 230

               
               
               Conread position:379-834
               
               
               Cow position:chr29:16347582-16347108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:320
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):36, 248

               
               
               Conread position:414-834
               
               
               Cow position:chr29:16012832-16013276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 63

               
               
               Conread position:418-825
               
               
               Cow position:chr29:2886344-2886757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:282
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):110, 64

               
               
               Conread position:418-834
               
               
               Cow position:chr29:15117487-15117923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:421-744
               
               
               Cow position:chr29:38746385-38746039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:421-825
               
               
               Cow position:chr29:2463535-2463959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:286
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):9, 283

               
               
               Conread position:422-835
               
               
               Cow position:chr29:9331233-9330818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 84

               
               
               Conread position:423-645
               
               
               Cow position:chr29:10652090-10651852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):7, 213

               
               
               Conread position:425-763
               
               
               Cow position:chr29:14839348-14838995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):100, 29

               
               
               Conread position:427-825
               
               
               Cow position:chr29:31094255-31094675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 295

               
               
               Conread position:428-781
               
               
               Cow position:chr29:3345723-3345366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):53, 25

               
               
               Conread position:428-834
               
               
               Cow position:chr29:15699641-15699214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 293

               
               
               Conread position:491-819
               
               
               Cow position:chr29:17138372-17138021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:251
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):34, 234

               
               
               Conread position:491-834
               
               
               Cow position:chr29:408000-408360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):34, 224

               
               
               Conread position:491-834
               
               
               Cow position:chr29:2484172-2483810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:493-834
               
               
               Cow position:chr29:19525028-19525387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 225

               
               
               Conread position:505-834
               
               
               Cow position:chr29:10846195-10845858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:505-834
               
               
               Cow position:chr29:34524083-34524420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:527-834
               
               
               Cow position:chr29:4519078-4518770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 24

               
               
               Conread position:547-803
               
               
               Cow position:chr29:132870-132610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):43, 27

               
               
               Conread position:568-834
               
               
               Cow position:chr29:35300092-35299822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):79, 137

               
               
               Conread position:569-761
               
               
               Cow position:chr29:11159352-11159549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-825
               
               
               Cow position:chr29:18361424-18361687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):25, 30

               
               
               Conread position:569-849
               
               
               Cow position:chr29:19956489-19956212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):72, 24

               
               
               Conread position:575-823
               
               
               Cow position:chr29:2184270-2184014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):71, 13

               
               
               Conread position:591-834
               
               
               Cow position:chr29:40471815-40471567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:594-834
               
               
               Cow position:chr29:15995235-15995480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):52, 113

               
               
               Conread position:602-804
               
               
               Cow position:chr29:10205609-10205396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):46, 157

               
               
               Conread position:609-834
               
               
               Cow position:chr29:32805701-32805477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):51, 56

               
               
               Conread position:621-834
               
               
               Cow position:chr29:31123245-31123463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):26, 84

               
               
               Conread position:629-834
               
               
               Cow position:chr29:16596714-16596522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:632-834
               
               
               Cow position:chr29:9639444-9639645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):16, 57

               
               
               Conread position:666-806
               
               
               Cow position:chr29:35739648-35739787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:666-825
               
               
               Cow position:chr29:16171034-16171192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:666-827
               
               
               Cow position:chr29:6872484-6872644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr29:5960902-5960738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:666-835
               
               
               Cow position:chr29:16615460-16615626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):163, 30

               
               
               Conread position:668-813
               
               
               Cow position:chr29:43728403-43728259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:668-826
               
               
               Cow position:chr29:3712084-3711926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):140, 26

               
               
               Conread position:671-834
               
               
               Cow position:chr29:15623637-15623797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:671-834
               
               
               Cow position:chr29:30412778-30412619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):134, 28

               
               
               Conread position:679-834
               
               
               Cow position:chr29:9861889-9862043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:696-823
               
               
               Cow position:chr29:649125-648997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:698-830
               
               
               Cow position:chr29:28578776-28578644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr29:5426388-5426524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr29:32207751-32207615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr29:41183978-41184114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:701-834
               
               
               Cow position:chr29:40499960-40500093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:708-834
               
               
               Cow position:chr29:30708261-30708135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:710-825
               
               
               Cow position:chr29:5979700-5979815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:711-834
               
               
               Cow position:chr29:39424113-39424236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-387
               
               
               Cow position:chr3:72776815-72776392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):54, 125

               
               
               Conread position:43-645
               
               
               Cow position:chr3:12672724-12673359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:60-466
               
               
               Cow position:chr3:16620092-16620551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:313
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):14, 49

               
               
               Conread position:62-382
               
               
               Cow position:chr3:28922653-28922294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):30, 50

               
               
               Conread position:69-453
               
               
               Cow position:chr3:18184557-18184132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 44

               
               
               Conread position:69-467
               
               
               Cow position:chr3:64294160-64293729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):75, 23

               
               
               Conread position:69-480
               
               
               Cow position:chr3:522223-521767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:310
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):70, 35

               
               
               Conread position:70-580
               
               
               Cow position:chr3:64024392-64024953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:383
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:70-834
               
               
               Cow position:chr3:57481108-57481920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:820
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 369

               
               
               Conread position:71-453
               
               
               Cow position:chr3:29282402-29281977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:291
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):69, 36

               
               
               Conread position:71-521
               
               
               Cow position:chr3:23216685-23217178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:333
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):23, 381

               
               
               Conread position:73-223
               
               
               Cow position:chr3:74407832-74407682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):69, 36

               
               
               Conread position:73-274
               
               
               Cow position:chr3:27544862-27545074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-315
               
               
               Cow position:chr3:45312440-45312182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):29, 94

               
               
               Conread position:73-368
               
               
               Cow position:chr3:77187928-77187598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:73-381
               
               
               Cow position:chr3:4991269-4991604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):21, 40

               
               
               Conread position:73-433
               
               
               Cow position:chr3:39970421-39970829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:279
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:73-467
               
               
               Cow position:chr3:17865075-17864632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:305
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-467
               
               
               Cow position:chr3:77472354-77472785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:303
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-508
               
               
               Cow position:chr3:14613664-14613193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 345

               
               
               Conread position:73-522
               
               
               Cow position:chr3:11784997-11784510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-540
               
               
               Cow position:chr3:13248374-13248895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:354
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-615
               
               
               Cow position:chr3:5887523-5886926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:401
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):54, 35

               
               
               Conread position:73-630
               
               
               Cow position:chr3:3884548-3885172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 307

               
               
               Conread position:73-632
               
               
               Cow position:chr3:46753487-46752872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:399
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):71, 34

               
               
               Conread position:73-645
               
               
               Cow position:chr3:3301271-3300645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:418
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:73-720
               
               
               Cow position:chr3:20476145-20475443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-725
               
               
               Cow position:chr3:302868-302156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:73-725
               
               
               Cow position:chr3:56697484-56696773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-793
               
               
               Cow position:chr3:12750531-12749757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 6

               
               
               Conread position:73-815
               
               
               Cow position:chr3:43084864-43084077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:798
               
               
               Alignm identity:545
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-824
               
               
               Cow position:chr3:14466225-14467052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:834
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 31

               
               
               Conread position:73-824
               
               
               Cow position:chr3:77550602-77549800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:816
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:73-825
               
               
               Cow position:chr3:55374712-55373915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:815
               
               
               Alignm identity:546
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 34

               
               
               Conread position:73-825
               
               
               Cow position:chr3:66623832-66623038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:814
               
               
               Alignm identity:547
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr3:2903818-2904623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:821
               
               
               Alignm identity:552
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 47

               
               
               Conread position:73-834
               
               
               Cow position:chr3:18815140-18814322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:822
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr3:49610569-49611392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:826
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr3:50205219-50204362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:861
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:74-519
               
               
               Cow position:chr3:14633603-14634081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:327
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):20, 29

               
               
               Conread position:74-581
               
               
               Cow position:chr3:17058844-17059368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:371
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):63, 33

               
               
               Conread position:74-735
               
               
               Cow position:chr3:54766599-54765924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:458
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:74-819
               
               
               Cow position:chr3:38870211-38869404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:813
               
               
               Alignm identity:556
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 33

               
               
               Conread position:74-834
               
               
               Cow position:chr3:45184356-45185166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:821
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 35

               
               
               Conread position:76-714
               
               
               Cow position:chr3:38863319-38862671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 37

               
               
               Conread position:81-786
               
               
               Cow position:chr3:63688285-63689025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 119

               
               
               Conread position:95-579
               
               
               Cow position:chr3:16716232-16716747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:332
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):33, 53

               
               
               Conread position:95-831
               
               
               Cow position:chr3:60177505-60178275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:784
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:105-692
               
               
               Cow position:chr3:60184571-60185226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:433
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):33, 23

               
               
               Conread position:109-528
               
               
               Cow position:chr3:14280271-14279826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:109-813
               
               
               Cow position:chr3:15662871-15663600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:112-516
               
               
               Cow position:chr3:72390511-72390071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:295
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):28, 10

               
               
               Conread position:118-824
               
               
               Cow position:chr3:61678120-61677371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 435

               
               
               Conread position:121-369
               
               
               Cow position:chr3:20519652-20519382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):19, 154

               
               
               Conread position:122-392
               
               
               Cow position:chr3:45215219-45215502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):18, 105

               
               
               Conread position:122-451
               
               
               Cow position:chr3:16333004-16332650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):25, 82

               
               
               Conread position:122-548
               
               
               Cow position:chr3:44536392-44536871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:319
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:122-796
               
               
               Cow position:chr3:35884538-35885261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 574

               
               
               Conread position:122-834
               
               
               Cow position:chr3:57456532-57455786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:765
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 296

               
               
               Conread position:123-824
               
               
               Cow position:chr3:52690310-52689579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 88

               
               
               Conread position:123-831
               
               
               Cow position:chr3:34086638-34087375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 10

               
               
               Conread position:138-480
               
               
               Cow position:chr3:61539164-61538796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):21, 9

               
               
               Conread position:138-480
               
               
               Cow position:chr3:74391343-74391715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):11, 243

               
               
               Conread position:139-571
               
               
               Cow position:chr3:59333124-59332669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:323
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):10, 144

               
               
               Conread position:142-382
               
               
               Cow position:chr3:18246026-18246284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:142-465
               
               
               Cow position:chr3:73763077-73763424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:142-522
               
               
               Cow position:chr3:77366152-77366537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:281
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:142-635
               
               
               Cow position:chr3:49416291-49416828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:142-819
               
               
               Cow position:chr3:50921586-50920867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 14

               
               
               Conread position:142-825
               
               
               Cow position:chr3:5951066-5951791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:142-825
               
               
               Cow position:chr3:53047242-53047956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:142-834
               
               
               Cow position:chr3:226333-227057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 11

               
               
               Conread position:143-293
               
               
               Cow position:chr3:46062890-46062736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-336
               
               
               Cow position:chr3:66610450-66610640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:143-337
               
               
               Cow position:chr3:74233629-74233424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-369
               
               
               Cow position:chr3:1034646-1034400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-373
               
               
               Cow position:chr3:37150848-37151099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-373
               
               
               Cow position:chr3:45748813-45748562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-373
               
               
               Cow position:chr3:81057968-81058219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-374
               
               
               Cow position:chr3:38346594-38346344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-379
               
               
               Cow position:chr3:2024562-2024314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-382
               
               
               Cow position:chr3:2922189-2921929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr3:34037527-34037267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr3:37009187-37009444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-382
               
               
               Cow position:chr3:38747939-38747679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr3:52045461-52045721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr3:70074545-70074805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr3:81374693-81374953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-387
               
               
               Cow position:chr3:15379653-15379915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:143-387
               
               
               Cow position:chr3:43528843-43529108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):82, 45

               
               
               Conread position:143-387
               
               
               Cow position:chr3:48269254-48268987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:143-387
               
               
               Cow position:chr3:75157801-75158055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):87, 10

               
               
               Conread position:143-399
               
               
               Cow position:chr3:13517769-13518034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):50, 13

               
               
               Conread position:143-410
               
               
               Cow position:chr3:3372627-3372919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-410
               
               
               Cow position:chr3:21100362-21100069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-419
               
               
               Cow position:chr3:49120993-49121289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-440
               
               
               Cow position:chr3:63176900-63176579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-445
               
               
               Cow position:chr3:50217550-50217217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-451
               
               
               Cow position:chr3:26974078-26974419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:143-453
               
               
               Cow position:chr3:6024300-6024641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr3:12932325-12931984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr3:39232270-39231929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-454
               
               
               Cow position:chr3:6171030-6170688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-467
               
               
               Cow position:chr3:54877199-54876867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):139, 77

               
               
               Conread position:143-496
               
               
               Cow position:chr3:45881289-45880916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:279
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:143-517
               
               
               Cow position:chr3:40205961-40205555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:278
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-518
               
               
               Cow position:chr3:13352564-13352977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-520
               
               
               Cow position:chr3:25753821-25753403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-525
               
               
               Cow position:chr3:60932824-60932413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:292
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-528
               
               
               Cow position:chr3:79596174-79595773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-540
               
               
               Cow position:chr3:26892049-26891615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:296
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-540
               
               
               Cow position:chr3:69272160-69271726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:301
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:143-546
               
               
               Cow position:chr3:24432936-24432503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:295
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-547
               
               
               Cow position:chr3:52651396-52651823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:298
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:143-551
               
               
               Cow position:chr3:35043718-35043273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-555
               
               
               Cow position:chr3:34392726-34393177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-579
               
               
               Cow position:chr3:66978222-66977752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:328
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:143-580
               
               
               Cow position:chr3:59865038-59864561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:333
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-611
               
               
               Cow position:chr3:75997336-75997841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:333
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-614
               
               
               Cow position:chr3:26722261-26722770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:341
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:143-638
               
               
               Cow position:chr3:37982807-37983348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:143-644
               
               
               Cow position:chr3:31422567-31423116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-645
               
               
               Cow position:chr3:45675219-45675768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-645
               
               
               Cow position:chr3:55246102-55245553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-668
               
               
               Cow position:chr3:62793530-62794091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-692
               
               
               Cow position:chr3:19216456-19215873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:389
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-692
               
               
               Cow position:chr3:36121734-36121132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-704
               
               
               Cow position:chr3:25057222-25056635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:143-721
               
               
               Cow position:chr3:41018752-41019385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-752
               
               
               Cow position:chr3:34556831-34557474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-755
               
               
               Cow position:chr3:13034937-13035601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-766
               
               
               Cow position:chr3:65473986-65473314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-768
               
               
               Cow position:chr3:24454985-24455634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-772
               
               
               Cow position:chr3:40520381-40521062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-794
               
               
               Cow position:chr3:6838591-6837885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-806
               
               
               Cow position:chr3:30321803-30321093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-810
               
               
               Cow position:chr3:72174747-72175463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 5

               
               
               Conread position:143-819
               
               
               Cow position:chr3:6529551-6528823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-822
               
               
               Cow position:chr3:26993680-26992953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:544
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-824
               
               
               Cow position:chr3:25690187-25689481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr3:14285286-14284559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:526
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 10

               
               
               Conread position:143-825
               
               
               Cow position:chr3:18862996-18862266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-825
               
               
               Cow position:chr3:21178698-21179432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr3:23286793-23287510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr3:31419085-31418360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr3:40049447-40048714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-825
               
               
               Cow position:chr3:53879707-53880442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-825
               
               
               Cow position:chr3:66887639-66888371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-825
               
               
               Cow position:chr3:72633631-72632895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-829
               
               
               Cow position:chr3:3837049-3837763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-829
               
               
               Cow position:chr3:45978058-45977324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:143-831
               
               
               Cow position:chr3:64654225-64653488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-832
               
               
               Cow position:chr3:2573086-2572346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-832
               
               
               Cow position:chr3:17937459-17938184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:537
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-834
               
               
               Cow position:chr3:6689372-6688627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:756
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr3:10244218-10243477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr3:15417025-15416282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr3:16226433-16225693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr3:19753177-19753912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr3:19881608-19880867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr3:23010910-23010188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr3:23204120-23204857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr3:38096459-38095715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr3:40284790-40285500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr3:40336587-40337327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:527
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr3:53519341-53518652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr3:56484696-56485444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:752
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr3:66829390-66830122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr3:74061026-74060290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr3:75038283-75039026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr3:76864990-76864247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-850
               
               
               Cow position:chr3:20780902-20781625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:549
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:144-528
               
               
               Cow position:chr3:4018069-4017646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:306
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:144-554
               
               
               Cow position:chr3:51254955-51254510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:144-615
               
               
               Cow position:chr3:26920285-26919770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 26

               
               
               Conread position:144-638
               
               
               Cow position:chr3:18575066-18575591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:353
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:144-786
               
               
               Cow position:chr3:63202788-63202113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 97

               
               
               Conread position:144-825
               
               
               Cow position:chr3:24442549-24443269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-825
               
               
               Cow position:chr3:49564574-49563835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-825
               
               
               Cow position:chr3:68696417-68697140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-831
               
               
               Cow position:chr3:16293356-16294091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 23

               
               
               Conread position:144-833
               
               
               Cow position:chr3:48362477-48361755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:532
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:144-834
               
               
               Cow position:chr3:9403706-9404418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-834
               
               
               Cow position:chr3:18758848-18759601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:764
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 12

               
               
               Conread position:144-834
               
               
               Cow position:chr3:30615386-30616121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-834
               
               
               Cow position:chr3:39555043-39555771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 26

               
               
               Conread position:144-834
               
               
               Cow position:chr3:50111498-50112205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 22

               
               
               Conread position:144-834
               
               
               Cow position:chr3:53414569-53413852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:461
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:144-834
               
               
               Cow position:chr3:76932346-76933055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:473
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):73, 9

               
               
               Conread position:144-838
               
               
               Cow position:chr3:76188082-76187344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 116

               
               
               Conread position:145-382
               
               
               Cow position:chr3:69345437-69345686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-410
               
               
               Cow position:chr3:54608456-54608742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):76, 11

               
               
               Conread position:145-453
               
               
               Cow position:chr3:5445271-5445608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-453
               
               
               Cow position:chr3:22919076-22918740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-478
               
               
               Cow position:chr3:46349768-46349420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):6, 16

               
               
               Conread position:145-571
               
               
               Cow position:chr3:64171786-64171334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:311
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-579
               
               
               Cow position:chr3:31749224-31748760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 17

               
               
               Conread position:145-644
               
               
               Cow position:chr3:59603357-59602812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:145-692
               
               
               Cow position:chr3:6442623-6442026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-731
               
               
               Cow position:chr3:31224842-31224198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:428
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):74, 11

               
               
               Conread position:145-821
               
               
               Cow position:chr3:21303039-21303725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-825
               
               
               Cow position:chr3:56148849-56148115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-825
               
               
               Cow position:chr3:76000404-76001130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 8

               
               
               Conread position:145-826
               
               
               Cow position:chr3:28435151-28435875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr3:23169679-23170377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:528
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr3:46506325-46505584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-834
               
               
               Cow position:chr3:66968322-66969063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr3:78023891-78024614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 11

               
               
               Conread position:146-409
               
               
               Cow position:chr3:63275975-63276256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:146-834
               
               
               Cow position:chr3:36874504-36875251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 35

               
               
               Conread position:147-303
               
               
               Cow position:chr3:54653603-54653772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-337
               
               
               Cow position:chr3:73211385-73211178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 129

               
               
               Conread position:147-337
               
               
               Cow position:chr3:83761782-83761991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-381
               
               
               Cow position:chr3:64216127-64215870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-382
               
               
               Cow position:chr3:30567670-30567412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-382
               
               
               Cow position:chr3:70890999-70890744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-410
               
               
               Cow position:chr3:24887142-24886852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):12, 111

               
               
               Conread position:147-411
               
               
               Cow position:chr3:80564355-80564065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-436
               
               
               Cow position:chr3:9639473-9639778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):12, 92

               
               
               Conread position:147-452
               
               
               Cow position:chr3:39878627-39878959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 148

               
               
               Conread position:147-453
               
               
               Cow position:chr3:68501014-68500677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-457
               
               
               Cow position:chr3:33633488-33633819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):12, 54

               
               
               Conread position:147-467
               
               
               Cow position:chr3:16157073-16156727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):12, 118

               
               
               Conread position:147-485
               
               
               Cow position:chr3:59607843-59607477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):12, 52

               
               
               Conread position:147-509
               
               
               Cow position:chr3:76136876-76136478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:147-571
               
               
               Cow position:chr3:174054-173594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:320
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):12, 335

               
               
               Conread position:147-632
               
               
               Cow position:chr3:54863066-54863598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:360
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):12, 231

               
               
               Conread position:147-644
               
               
               Cow position:chr3:33124702-33125244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:147-644
               
               
               Cow position:chr3:56160270-56160806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:368
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):17, 34

               
               
               Conread position:147-644
               
               
               Cow position:chr3:73450756-73451303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-682
               
               
               Cow position:chr3:3031787-3031218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:375
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):10, 352

               
               
               Conread position:147-739
               
               
               Cow position:chr3:84199326-84198705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 110

               
               
               Conread position:147-761
               
               
               Cow position:chr3:38497325-38496681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:417
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):12, 59

               
               
               Conread position:147-796
               
               
               Cow position:chr3:1483576-1482884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:444
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):12, 103

               
               
               Conread position:147-824
               
               
               Cow position:chr3:4031304-4030581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 94

               
               
               Conread position:147-825
               
               
               Cow position:chr3:2707318-2708044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 188

               
               
               Conread position:147-825
               
               
               Cow position:chr3:13275721-13276455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 610

               
               
               Conread position:147-825
               
               
               Cow position:chr3:14453209-14452483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 109

               
               
               Conread position:147-829
               
               
               Cow position:chr3:65989463-65988741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 103

               
               
               Conread position:147-834
               
               
               Cow position:chr3:2365360-2366074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 93

               
               
               Conread position:147-834
               
               
               Cow position:chr3:6897382-6896659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:533
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 103

               
               
               Conread position:147-834
               
               
               Cow position:chr3:12676082-12676813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 227

               
               
               Conread position:147-834
               
               
               Cow position:chr3:19884014-19883286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 292

               
               
               Conread position:147-834
               
               
               Cow position:chr3:24638958-24638227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 275

               
               
               Conread position:147-834
               
               
               Cow position:chr3:56644774-56645514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 595

               
               
               Conread position:147-834
               
               
               Cow position:chr3:69930280-69931018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 274

               
               
               Conread position:147-835
               
               
               Cow position:chr3:64376162-64376894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 49

               
               
               Conread position:148-435
               
               
               Cow position:chr3:11018999-11018688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):11, 279

               
               
               Conread position:148-509
               
               
               Cow position:chr3:59118223-59118619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:279
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):11, 286

               
               
               Conread position:148-537
               
               
               Cow position:chr3:35056520-35056109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:295
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):11, 51

               
               
               Conread position:148-644
               
               
               Cow position:chr3:2627707-2627194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:329
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 171

               
               
               Conread position:148-691
               
               
               Cow position:chr3:4039380-4039973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 51

               
               
               Conread position:148-803
               
               
               Cow position:chr3:58953685-58953005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:457
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 182

               
               
               Conread position:148-811
               
               
               Cow position:chr3:24531230-24530541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 54

               
               
               Conread position:148-819
               
               
               Cow position:chr3:47272323-47273049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 573

               
               
               Conread position:148-825
               
               
               Cow position:chr3:45691504-45692200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 153

               
               
               Conread position:148-834
               
               
               Cow position:chr3:21025875-21026587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:439
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 51

               
               
               Conread position:149-834
               
               
               Cow position:chr3:37628437-37627711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 260

               
               
               Conread position:150-402
               
               
               Cow position:chr3:45700214-45699939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):72, 110

               
               
               Conread position:150-515
               
               
               Cow position:chr3:22220690-22220296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):72, 9

               
               
               Conread position:150-616
               
               
               Cow position:chr3:16657324-16657828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 8

               
               
               Conread position:152-522
               
               
               Cow position:chr3:14923200-14922799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):70, 7

               
               
               Conread position:152-825
               
               
               Cow position:chr3:68717163-68717884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 7

               
               
               Conread position:153-825
               
               
               Cow position:chr3:27867203-27866484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 150

               
               
               Conread position:154-571
               
               
               Cow position:chr3:19717722-19718179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 126

               
               
               Conread position:158-372
               
               
               Cow position:chr3:78664791-78665021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr3:1622645-1622399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr3:5989018-5989265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr3:6714619-6714373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr3:6884690-6884443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr3:80741415-80741169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-410
               
               
               Cow position:chr3:37020679-37020950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-410
               
               
               Cow position:chr3:48600071-48599804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 37

               
               
               Conread position:158-410
               
               
               Cow position:chr3:61278290-61278016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):66, 58

               
               
               Conread position:158-423
               
               
               Cow position:chr3:12982343-12982630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-451
               
               
               Cow position:chr3:65178916-65178591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr3:4135437-4135764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr3:28764878-28765194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):85, 65

               
               
               Conread position:158-453
               
               
               Cow position:chr3:30753127-30752801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr3:49975984-49976309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):64, 181

               
               
               Conread position:158-453
               
               
               Cow position:chr3:58336851-58336524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-457
               
               
               Cow position:chr3:51256483-51256152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):61, 323

               
               
               Conread position:158-467
               
               
               Cow position:chr3:13360991-13360651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-467
               
               
               Cow position:chr3:19959139-19958798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-485
               
               
               Cow position:chr3:2507097-2507453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):65, 343

               
               
               Conread position:158-520
               
               
               Cow position:chr3:65536659-65536263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-522
               
               
               Cow position:chr3:51234960-51235345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):73, 216

               
               
               Conread position:158-528
               
               
               Cow position:chr3:46683378-46682973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):64, 166

               
               
               Conread position:158-528
               
               
               Cow position:chr3:64655749-64655350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):64, 303

               
               
               Conread position:158-533
               
               
               Cow position:chr3:39921402-39921809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:281
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-537
               
               
               Cow position:chr3:33254319-33254731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 55

               
               
               Conread position:158-540
               
               
               Cow position:chr3:37600275-37599861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:290
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):28, 377

               
               
               Conread position:158-540
               
               
               Cow position:chr3:41207020-41207441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:286
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):64, 276

               
               
               Conread position:158-547
               
               
               Cow position:chr3:41057504-41057082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):65, 415

               
               
               Conread position:158-551
               
               
               Cow position:chr3:36417284-36416853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:288
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-562
               
               
               Cow position:chr3:21779233-21779674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):64, 433

               
               
               Conread position:158-571
               
               
               Cow position:chr3:75771590-75772047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:313
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr3:579717-579253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:310
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):64, 307

               
               
               Conread position:158-580
               
               
               Cow position:chr3:34015956-34015490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:308
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):64, 343

               
               
               Conread position:158-580
               
               
               Cow position:chr3:36861562-36862021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:309
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):64, 339

               
               
               Conread position:158-599
               
               
               Cow position:chr3:42187014-42186525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:336
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):60, 221

               
               
               Conread position:158-603
               
               
               Cow position:chr3:77696938-77697400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:304
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):61, 189

               
               
               Conread position:158-613
               
               
               Cow position:chr3:35109771-35109268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:335
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:158-614
               
               
               Cow position:chr3:6785858-6785358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:158-631
               
               
               Cow position:chr3:49388194-49387677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 180

               
               
               Conread position:158-640
               
               
               Cow position:chr3:14438444-14438970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:346
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):64, 109

               
               
               Conread position:158-644
               
               
               Cow position:chr3:14864427-14863895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 381

               
               
               Conread position:158-645
               
               
               Cow position:chr3:79668655-79668117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-685
               
               
               Cow position:chr3:14212935-14212354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-691
               
               
               Cow position:chr3:42507669-42508251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 302

               
               
               Conread position:158-692
               
               
               Cow position:chr3:2075325-2074740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-692
               
               
               Cow position:chr3:35919104-35918521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 319

               
               
               Conread position:158-692
               
               
               Cow position:chr3:65085478-65084891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 560

               
               
               Conread position:158-708
               
               
               Cow position:chr3:47986984-47986383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 587

               
               
               Conread position:158-754
               
               
               Cow position:chr3:11418091-11417442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 589

               
               
               Conread position:158-761
               
               
               Cow position:chr3:78520593-78519935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 562

               
               
               Conread position:158-771
               
               
               Cow position:chr3:30939046-30938379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 598

               
               
               Conread position:158-801
               
               
               Cow position:chr3:52149741-52150437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-814
               
               
               Cow position:chr3:26742332-26743033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 91

               
               
               Conread position:158-815
               
               
               Cow position:chr3:12797517-12798216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 54

               
               
               Conread position:158-825
               
               
               Cow position:chr3:945239-944520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 163

               
               
               Conread position:158-825
               
               
               Cow position:chr3:7155262-7155982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 595

               
               
               Conread position:158-825
               
               
               Cow position:chr3:14680626-14679912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 555

               
               
               Conread position:158-825
               
               
               Cow position:chr3:20795838-20795118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 589

               
               
               Conread position:158-825
               
               
               Cow position:chr3:24585683-24586404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 462

               
               
               Conread position:158-825
               
               
               Cow position:chr3:49907490-49908191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 467

               
               
               Conread position:158-830
               
               
               Cow position:chr3:20379174-20379896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 347

               
               
               Conread position:158-834
               
               
               Cow position:chr3:2833994-2834723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr3:2866110-2866839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr3:7245564-7246288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 91

               
               
               Conread position:158-834
               
               
               Cow position:chr3:19942427-19941707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 191

               
               
               Conread position:158-834
               
               
               Cow position:chr3:21593826-21593100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 315

               
               
               Conread position:158-834
               
               
               Cow position:chr3:24265742-24265018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 54

               
               
               Conread position:158-834
               
               
               Cow position:chr3:34503594-34504307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 91

               
               
               Conread position:158-834
               
               
               Cow position:chr3:35612691-35611970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:158-834
               
               
               Cow position:chr3:37894374-37893649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 591

               
               
               Conread position:158-834
               
               
               Cow position:chr3:43525195-43525923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 349

               
               
               Conread position:158-834
               
               
               Cow position:chr3:44927358-44926631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 556

               
               
               Conread position:158-834
               
               
               Cow position:chr3:47078068-47078798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 596

               
               
               Conread position:158-834
               
               
               Cow position:chr3:49604902-49605623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 179

               
               
               Conread position:158-834
               
               
               Cow position:chr3:56297929-56297200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr3:68870210-68870934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 590

               
               
               Conread position:158-834
               
               
               Cow position:chr3:68889028-68889756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 112

               
               
               Conread position:158-834
               
               
               Cow position:chr3:83767789-83767069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 8

               
               
               Conread position:159-377
               
               
               Cow position:chr3:54959276-54959036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:159-382
               
               
               Cow position:chr3:1074123-1073897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 112

               
               
               Conread position:159-387
               
               
               Cow position:chr3:9665409-9665659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:159-470
               
               
               Cow position:chr3:37040818-37040498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):63, 124

               
               
               Conread position:159-571
               
               
               Cow position:chr3:73416542-73416085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:306
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):64, 23

               
               
               Conread position:159-635
               
               
               Cow position:chr3:40003966-40004459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:345
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):63, 253

               
               
               Conread position:160-394
               
               
               Cow position:chr3:2537634-2537385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 81

               
               
               Conread position:160-453
               
               
               Cow position:chr3:30329127-30329451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-458
               
               
               Cow position:chr3:26660429-26660752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):62, 20

               
               
               Conread position:160-459
               
               
               Cow position:chr3:23944501-23944184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-459
               
               
               Cow position:chr3:78546726-78547047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 220

               
               
               Conread position:160-522
               
               
               Cow position:chr3:29391589-29391975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:265
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):61, 312

               
               
               Conread position:160-548
               
               
               Cow position:chr3:43662775-43662368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):130, 73

               
               
               Conread position:160-668
               
               
               Cow position:chr3:22353152-22352604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 339

               
               
               Conread position:160-683
               
               
               Cow position:chr3:12668238-12667675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:376
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):62, 338

               
               
               Conread position:160-734
               
               
               Cow position:chr3:48273327-48272695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:418
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):58, 323

               
               
               Conread position:160-767
               
               
               Cow position:chr3:58207317-58207962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:415
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):65, 360

               
               
               Conread position:160-778
               
               
               Cow position:chr3:70913720-70914393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 361

               
               
               Conread position:160-807
               
               
               Cow position:chr3:64318279-64317583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 175

               
               
               Conread position:160-807
               
               
               Cow position:chr3:72863506-72864194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:443
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):44, 37

               
               
               Conread position:160-813
               
               
               Cow position:chr3:42846886-42846190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 445

               
               
               Conread position:160-815
               
               
               Cow position:chr3:19830626-19831318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:458
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):64, 35

               
               
               Conread position:160-825
               
               
               Cow position:chr3:22724241-22724944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 152

               
               
               Conread position:160-825
               
               
               Cow position:chr3:31022217-31021508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 308

               
               
               Conread position:160-825
               
               
               Cow position:chr3:48603803-48603076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 604

               
               
               Conread position:160-828
               
               
               Cow position:chr3:16883790-16884461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:428
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):61, 362

               
               
               Conread position:160-828
               
               
               Cow position:chr3:43316716-43317416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 72

               
               
               Conread position:160-834
               
               
               Cow position:chr3:5475082-5474354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:160-834
               
               
               Cow position:chr3:31933796-31934517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 575

               
               
               Conread position:160-834
               
               
               Cow position:chr3:32221251-32220548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 368

               
               
               Conread position:160-834
               
               
               Cow position:chr3:37972569-37971860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 102

               
               
               Conread position:160-834
               
               
               Cow position:chr3:40101313-40102031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 364

               
               
               Conread position:160-834
               
               
               Cow position:chr3:49336730-49336014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 275

               
               
               Conread position:160-834
               
               
               Cow position:chr3:49541665-49542385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 405

               
               
               Conread position:160-846
               
               
               Cow position:chr3:17056532-17057249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:475
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):57, 15

               
               
               Conread position:161-616
               
               
               Cow position:chr3:67044726-67045209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:306
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):61, 222

               
               
               Conread position:161-755
               
               
               Cow position:chr3:13311460-13312111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 590

               
               
               Conread position:161-804
               
               
               Cow position:chr3:47691512-47690843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:433
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):61, 119

               
               
               Conread position:161-814
               
               
               Cow position:chr3:63219469-63218790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 213

               
               
               Conread position:161-821
               
               
               Cow position:chr3:15655775-15656454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 313

               
               
               Conread position:161-821
               
               
               Cow position:chr3:58034126-58034809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 195

               
               
               Conread position:161-824
               
               
               Cow position:chr3:19109104-19108390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 220

               
               
               Conread position:161-834
               
               
               Cow position:chr3:49463029-49463737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 138

               
               
               Conread position:161-834
               
               
               Cow position:chr3:50461841-50461167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 257

               
               
               Conread position:162-370
               
               
               Cow position:chr3:39857222-39857009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):130, 61

               
               
               Conread position:162-458
               
               
               Cow position:chr3:3061548-3061254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):57, 26

               
               
               Conread position:162-815
               
               
               Cow position:chr3:822549-823256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 592

               
               
               Conread position:162-822
               
               
               Cow position:chr3:58950999-58950290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 586

               
               
               Conread position:162-834
               
               
               Cow position:chr3:43189732-43190454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 585

               
               
               Conread position:163-690
               
               
               Cow position:chr3:23497223-23497799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:381
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:163-693
               
               
               Cow position:chr3:36671078-36671665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:384
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:163-834
               
               
               Cow position:chr3:6865189-6864483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 137

               
               
               Conread position:164-387
               
               
               Cow position:chr3:33692945-33692712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):59, 116

               
               
               Conread position:164-819
               
               
               Cow position:chr3:24352218-24351543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 308

               
               
               Conread position:164-825
               
               
               Cow position:chr3:27090659-27091349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:453
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):60, 359

               
               
               Conread position:164-832
               
               
               Cow position:chr3:36170423-36171116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:449
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):59, 5

               
               
               Conread position:165-522
               
               
               Cow position:chr3:70336161-70336527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):57, 76

               
               
               Conread position:165-528
               
               
               Cow position:chr3:22272162-22272536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:254
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):60, 135

               
               
               Conread position:166-410
               
               
               Cow position:chr3:75479394-75479127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):84, 64

               
               
               Conread position:166-645
               
               
               Cow position:chr3:52256980-52257505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 281

               
               
               Conread position:166-834
               
               
               Cow position:chr3:26567311-26566593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 446

               
               
               Conread position:166-834
               
               
               Cow position:chr3:80929741-80930436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 254

               
               
               Conread position:167-375
               
               
               Cow position:chr3:67021470-67021696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:167-398
               
               
               Cow position:chr3:48528563-48528316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:167-457
               
               
               Cow position:chr3:18253055-18252761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):115, 47

               
               
               Conread position:167-479
               
               
               Cow position:chr3:51597449-51597128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):55, 80

               
               
               Conread position:167-543
               
               
               Cow position:chr3:10371901-10371498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:287
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):29, 209

               
               
               Conread position:167-807
               
               
               Cow position:chr3:27223551-27222891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 125

               
               
               Conread position:169-802
               
               
               Cow position:chr3:77448506-77447842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:423
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):54, 126

               
               
               Conread position:169-815
               
               
               Cow position:chr3:40344755-40344069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 97

               
               
               Conread position:169-815
               
               
               Cow position:chr3:54569526-54568863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 106

               
               
               Conread position:169-823
               
               
               Cow position:chr3:38252356-38251677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 257

               
               
               Conread position:169-834
               
               
               Cow position:chr3:3552849-3552140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 329

               
               
               Conread position:169-834
               
               
               Cow position:chr3:48095573-48096269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 210

               
               
               Conread position:170-823
               
               
               Cow position:chr3:82932162-82931458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 280

               
               
               Conread position:170-834
               
               
               Cow position:chr3:83289414-83290125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 426

               
               
               Conread position:171-527
               
               
               Cow position:chr3:42423971-42424353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):54, 92

               
               
               Conread position:171-547
               
               
               Cow position:chr3:7678030-7677611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 383

               
               
               Conread position:171-825
               
               
               Cow position:chr3:56101782-56101102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 337

               
               
               Conread position:173-529
               
               
               Cow position:chr3:58766652-58766282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 52

               
               
               Conread position:173-809
               
               
               Cow position:chr3:77226246-77225576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 14

               
               
               Conread position:176-804
               
               
               Cow position:chr3:51068401-51069055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:418
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):32, 116

               
               
               Conread position:177-801
               
               
               Cow position:chr3:72669035-72669713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 100

               
               
               Conread position:177-825
               
               
               Cow position:chr3:67545129-67545761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 46

               
               
               Conread position:178-834
               
               
               Cow position:chr3:29130614-29129912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 84

               
               
               Conread position:180-480
               
               
               Cow position:chr3:64278259-64277936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):50, 246

               
               
               Conread position:180-834
               
               
               Cow position:chr3:597621-596933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:183-527
               
               
               Cow position:chr3:17460736-17460365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:253
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):7, 90

               
               
               Conread position:183-834
               
               
               Cow position:chr3:49999656-49998954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 293

               
               
               Conread position:185-824
               
               
               Cow position:chr3:18886975-18886291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 117

               
               
               Conread position:187-825
               
               
               Cow position:chr3:46014174-46014856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 193

               
               
               Conread position:187-834
               
               
               Cow position:chr3:13723196-13723897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 564

               
               
               Conread position:189-453
               
               
               Cow position:chr3:53387623-53387894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):102, 36

               
               
               Conread position:189-547
               
               
               Cow position:chr3:31050511-31050886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):33, 201

               
               
               Conread position:189-635
               
               
               Cow position:chr3:35854057-35854564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:345
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:189-822
               
               
               Cow position:chr3:57743023-57742347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 242

               
               
               Conread position:189-825
               
               
               Cow position:chr3:7476408-7477096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 528

               
               
               Conread position:189-834
               
               
               Cow position:chr3:3652793-3653470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 245

               
               
               Conread position:189-834
               
               
               Cow position:chr3:7856935-7856241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 113

               
               
               Conread position:189-834
               
               
               Cow position:chr3:81101592-81100896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 565

               
               
               Conread position:201-633
               
               
               Cow position:chr3:47340635-47341089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:311
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):23, 228

               
               
               Conread position:201-834
               
               
               Cow position:chr3:12254529-12253863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:434
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):7, 34

               
               
               Conread position:201-834
               
               
               Cow position:chr3:77427169-77426519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 249

               
               
               Conread position:208-522
               
               
               Cow position:chr3:42500548-42500220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):30, 176

               
               
               Conread position:208-834
               
               
               Cow position:chr3:40826883-40826213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 538

               
               
               Conread position:217-644
               
               
               Cow position:chr3:65581715-65582184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:303
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:221-395
               
               
               Cow position:chr3:60891737-60891550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:221-537
               
               
               Cow position:chr3:15988411-15988067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:248
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:221-551
               
               
               Cow position:chr3:12665611-12665251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:221-807
               
               
               Cow position:chr3:33326856-33326224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 58

               
               
               Conread position:221-822
               
               
               Cow position:chr3:24572695-24573333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 518

               
               
               Conread position:221-825
               
               
               Cow position:chr3:46225353-46224720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 246

               
               
               Conread position:221-829
               
               
               Cow position:chr3:56103210-56102562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 20

               
               
               Conread position:221-832
               
               
               Cow position:chr3:42993405-42994053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 305

               
               
               Conread position:222-832
               
               
               Cow position:chr3:77726904-77726293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 117

               
               
               Conread position:224-746
               
               
               Cow position:chr3:11384780-11384220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:371
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):6, 44

               
               
               Conread position:225-834
               
               
               Cow position:chr3:61173958-61173310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:227-522
               
               
               Cow position:chr3:20999606-20999925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:228-548
               
               
               Cow position:chr3:64281860-64282199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:231-692
               
               
               Cow position:chr3:49931297-49930792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:336
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:233-834
               
               
               Cow position:chr3:50347258-50346637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 55

               
               
               Conread position:235-387
               
               
               Cow position:chr3:523662-523503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:235-467
               
               
               Cow position:chr3:68043047-68043301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:235-548
               
               
               Cow position:chr3:19794639-19794975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):58, 236

               
               
               Conread position:235-720
               
               
               Cow position:chr3:39327996-39327478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:347
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):56, 234

               
               
               Conread position:235-819
               
               
               Cow position:chr3:64876230-64875617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:405
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):57, 244

               
               
               Conread position:235-822
               
               
               Cow position:chr3:46857826-46858455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 257

               
               
               Conread position:235-834
               
               
               Cow position:chr3:54086928-54087555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 42

               
               
               Conread position:242-631
               
               
               Cow position:chr3:601147-600740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:265
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):45, 23

               
               
               Conread position:243-692
               
               
               Cow position:chr3:31396817-31396331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:329
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):49, 83

               
               
               Conread position:243-803
               
               
               Cow position:chr3:73637329-73636728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 498

               
               
               Conread position:243-808
               
               
               Cow position:chr3:69421043-69421623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:374
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 127

               
               
               Conread position:243-815
               
               
               Cow position:chr3:64698243-64697664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:394
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):50, 88

               
               
               Conread position:254-835
               
               
               Cow position:chr3:33318552-33317966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:381
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:259-834
               
               
               Cow position:chr3:74849730-74850329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 44

               
               
               Conread position:260-586
               
               
               Cow position:chr3:8605489-8605831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):81, 338

               
               
               Conread position:260-736
               
               
               Cow position:chr3:75164653-75165153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:317
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):75, 112

               
               
               Conread position:265-834
               
               
               Cow position:chr3:26596454-26595858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 198

               
               
               Conread position:267-834
               
               
               Cow position:chr3:56718910-56719510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 198

               
               
               Conread position:268-834
               
               
               Cow position:chr3:27782914-27783484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 72

               
               
               Conread position:269-452
               
               
               Cow position:chr3:71246011-71245813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:275-716
               
               
               Cow position:chr3:7772622-7773065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:304
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):13, 132

               
               
               Conread position:277-824
               
               
               Cow position:chr3:63736798-63736215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:287-825
               
               
               Cow position:chr3:42977195-42977759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 76

               
               
               Conread position:288-558
               
               
               Cow position:chr3:70322278-70322566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:217
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):49, 170

               
               
               Conread position:288-630
               
               
               Cow position:chr3:15082547-15082909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 187

               
               
               Conread position:290-528
               
               
               Cow position:chr3:46006487-46006244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 124

               
               
               Conread position:290-540
               
               
               Cow position:chr3:34464758-34464492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:290-645
               
               
               Cow position:chr3:8391750-8391394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):49, 159

               
               
               Conread position:290-657
               
               
               Cow position:chr3:37486655-37487043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):49, 216

               
               
               Conread position:290-802
               
               
               Cow position:chr3:3984503-3983960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 13

               
               
               Conread position:290-805
               
               
               Cow position:chr3:82364170-82363635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 45

               
               
               Conread position:290-807
               
               
               Cow position:chr3:33269618-33269081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 171

               
               
               Conread position:290-834
               
               
               Cow position:chr3:54653780-54654365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:290-834
               
               
               Cow position:chr3:63148246-63148820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 439

               
               
               Conread position:291-686
               
               
               Cow position:chr3:35619946-35619520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):46, 199

               
               
               Conread position:291-693
               
               
               Cow position:chr3:49732404-49732839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:300
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):48, 26

               
               
               Conread position:291-737
               
               
               Cow position:chr3:68274234-68273753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:326
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):48, 438

               
               
               Conread position:291-808
               
               
               Cow position:chr3:49134147-49134693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 442

               
               
               Conread position:291-834
               
               
               Cow position:chr3:29573734-29574310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 65

               
               
               Conread position:292-528
               
               
               Cow position:chr3:49429377-49429614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):49, 149

               
               
               Conread position:292-721
               
               
               Cow position:chr3:27454544-27455004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:308
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):47, 147

               
               
               Conread position:292-787
               
               
               Cow position:chr3:45312171-45311656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 128

               
               
               Conread position:292-802
               
               
               Cow position:chr3:26750819-26751338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:341
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):47, 39

               
               
               Conread position:292-807
               
               
               Cow position:chr3:26532613-26533152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:351
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):47, 227

               
               
               Conread position:294-815
               
               
               Cow position:chr3:48240642-48240089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 47

               
               
               Conread position:294-834
               
               
               Cow position:chr3:32490322-32490897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 441

               
               
               Conread position:295-834
               
               
               Cow position:chr3:27245304-27245872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 184

               
               
               Conread position:297-820
               
               
               Cow position:chr3:35509236-35508677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:350
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 432

               
               
               Conread position:311-834
               
               
               Cow position:chr3:1739499-1740057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 424

               
               
               Conread position:311-834
               
               
               Cow position:chr3:35343024-35342466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 424

               
               
               Conread position:312-834
               
               
               Cow position:chr3:74847808-74848349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 101

               
               
               Conread position:315-834
               
               
               Cow position:chr3:2791117-2790567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 416

               
               
               Conread position:315-834
               
               
               Cow position:chr3:19947569-19947038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 38

               
               
               Conread position:331-826
               
               
               Cow position:chr3:77272479-77272972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 191

               
               
               Conread position:336-644
               
               
               Cow position:chr3:2432310-2432642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:336-645
               
               
               Cow position:chr3:32769129-32768800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):49, 81

               
               
               Conread position:336-834
               
               
               Cow position:chr3:68509994-68510520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 107

               
               
               Conread position:340-622
               
               
               Cow position:chr3:10412586-10412283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):45, 8

               
               
               Conread position:341-818
               
               
               Cow position:chr3:66736233-66736733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:334
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):48, 31

               
               
               Conread position:345-834
               
               
               Cow position:chr3:21005152-21004631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:351
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):39, 184

               
               
               Conread position:352-835
               
               
               Cow position:chr3:63238707-63239198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:337
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:353-693
               
               
               Cow position:chr3:4191609-4191978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 347

               
               
               Conread position:353-834
               
               
               Cow position:chr3:31120809-31121327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 374

               
               
               Conread position:355-685
               
               
               Cow position:chr3:32412160-32412522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:357-834
               
               
               Cow position:chr3:1034186-1033678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 374

               
               
               Conread position:365-754
               
               
               Cow position:chr3:39856779-39856359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:278
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):20, 332

               
               
               Conread position:374-825
               
               
               Cow position:chr3:63000080-63000533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:384-705
               
               
               Cow position:chr3:30909093-30908752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 128

               
               
               Conread position:386-528
               
               
               Cow position:chr3:5972251-5972401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:387-825
               
               
               Cow position:chr3:57555054-57554598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:308
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):36, 74

               
               
               Conread position:388-762
               
               
               Cow position:chr3:34027587-34027987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):25, 304

               
               
               Conread position:414-832
               
               
               Cow position:chr3:523356-522939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 34

               
               
               Conread position:414-834
               
               
               Cow position:chr3:37280654-37280211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 309

               
               
               Conread position:418-809
               
               
               Cow position:chr3:64683761-64684162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:420-834
               
               
               Cow position:chr3:3061098-3060675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:288
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):10, 35

               
               
               Conread position:421-748
               
               
               Cow position:chr3:13115192-13115534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:240
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):9, 47

               
               
               Conread position:421-830
               
               
               Cow position:chr3:2921508-2921082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 297

               
               
               Conread position:421-834
               
               
               Cow position:chr3:6714258-6713825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr3:19797901-19798336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr3:22339158-22338724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:428-771
               
               
               Cow position:chr3:52664638-52664279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 82

               
               
               Conread position:428-824
               
               
               Cow position:chr3:20602613-20603026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):46, 292

               
               
               Conread position:430-787
               
               
               Cow position:chr3:27547208-27547583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:268
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):14, 32

               
               
               Conread position:430-825
               
               
               Cow position:chr3:32619805-32620216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 45

               
               
               Conread position:431-834
               
               
               Cow position:chr3:32702936-32703343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 21

               
               
               Conread position:433-834
               
               
               Cow position:chr3:56336721-56337138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 289

               
               
               Conread position:434-815
               
               
               Cow position:chr3:61277797-61277404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):97, 35

               
               
               Conread position:440-832
               
               
               Cow position:chr3:29325371-29324960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:270
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):47, 62

               
               
               Conread position:450-834
               
               
               Cow position:chr3:59332671-59332277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 32

               
               
               Conread position:491-807
               
               
               Cow position:chr3:12986838-12987173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-819
               
               
               Cow position:chr3:63276686-63277022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):34, 139

               
               
               Conread position:491-823
               
               
               Cow position:chr3:14054451-14054100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:247
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):34, 220

               
               
               Conread position:491-834
               
               
               Cow position:chr3:5445739-5446096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:252
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:491-834
               
               
               Cow position:chr3:48846183-48845822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 227

               
               
               Conread position:491-834
               
               
               Cow position:chr3:65178187-65177826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 227

               
               
               Conread position:492-834
               
               
               Cow position:chr3:28094313-28093952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 192

               
               
               Conread position:493-830
               
               
               Cow position:chr3:31771306-31770961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 214

               
               
               Conread position:504-809
               
               
               Cow position:chr3:14881369-14881683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):11, 66

               
               
               Conread position:504-834
               
               
               Cow position:chr3:73304660-73304322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):11, 32

               
               
               Conread position:505-820
               
               
               Cow position:chr3:5497287-5497602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:505-829
               
               
               Cow position:chr3:22512465-22512138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 8

               
               
               Conread position:506-822
               
               
               Cow position:chr3:6875118-6875445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:237
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):19, 90

               
               
               Conread position:506-834
               
               
               Cow position:chr3:36594975-36594639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):68, 202

               
               
               Conread position:508-816
               
               
               Cow position:chr3:19126423-19126107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):63, 29

               
               
               Conread position:514-834
               
               
               Cow position:chr3:11181816-11182131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):82, 21

               
               
               Conread position:514-834
               
               
               Cow position:chr3:42747579-42747906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:521-822
               
               
               Cow position:chr3:66651203-66651497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:521-834
               
               
               Cow position:chr3:77706961-77706642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:527-803
               
               
               Cow position:chr3:75839857-75840140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 160

               
               
               Conread position:530-807
               
               
               Cow position:chr3:80306607-80306325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 5

               
               
               Conread position:538-834
               
               
               Cow position:chr3:70322916-70323218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 174

               
               
               Conread position:543-770
               
               
               Cow position:chr3:52451531-52451296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):29, 163

               
               
               Conread position:545-782
               
               
               Cow position:chr3:29578521-29578767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):28, 164

               
               
               Conread position:545-831
               
               
               Cow position:chr3:62882474-62882181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):25, 161

               
               
               Conread position:545-834
               
               
               Cow position:chr3:41207483-41207781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):28, 164

               
               
               Conread position:547-815
               
               
               Cow position:chr3:49253623-49253348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 159

               
               
               Conread position:548-834
               
               
               Cow position:chr3:41315186-41314894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):24, 128

               
               
               Conread position:551-834
               
               
               Cow position:chr3:72390064-72389789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):22, 78

               
               
               Conread position:565-808
               
               
               Cow position:chr3:49429868-49429622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):81, 137

               
               
               Conread position:566-807
               
               
               Cow position:chr3:48223978-48224219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:569-785
               
               
               Cow position:chr3:38528732-38528948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 133

               
               
               Conread position:569-801
               
               
               Cow position:chr3:60143101-60142869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):77, 32

               
               
               Conread position:569-822
               
               
               Cow position:chr3:50941659-50941401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-829
               
               
               Cow position:chr3:32412603-32412867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-833
               
               
               Cow position:chr3:15988073-15987804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):79, 133

               
               
               Conread position:569-834
               
               
               Cow position:chr3:29581746-29581475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):77, 23

               
               
               Conread position:569-834
               
               
               Cow position:chr3:45568296-45568027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):68, 140

               
               
               Conread position:571-834
               
               
               Cow position:chr3:10371078-10370817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 17

               
               
               Conread position:571-834
               
               
               Cow position:chr3:74852213-74852478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):75, 131

               
               
               Conread position:574-834
               
               
               Cow position:chr3:2852393-2852665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):72, 25

               
               
               Conread position:582-825
               
               
               Cow position:chr3:52726228-52726462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):61, 11

               
               
               Conread position:591-796
               
               
               Cow position:chr3:36614165-36614374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-819
               
               
               Cow position:chr3:64025253-64025488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):56, 116

               
               
               Conread position:591-834
               
               
               Cow position:chr3:12664997-12664749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-834
               
               
               Cow position:chr3:34015406-34015158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:592-849
               
               
               Cow position:chr3:32326363-32326620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):45, 92

               
               
               Conread position:594-834
               
               
               Cow position:chr3:41083224-41082979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):53, 111

               
               
               Conread position:602-801
               
               
               Cow position:chr3:53388549-53388752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):46, 100

               
               
               Conread position:605-811
               
               
               Cow position:chr3:3790654-3790449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):41, 8

               
               
               Conread position:609-822
               
               
               Cow position:chr3:34347034-34347252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:609-825
               
               
               Cow position:chr3:27921497-27921277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):38, 94

               
               
               Conread position:609-825
               
               
               Cow position:chr3:36402651-36402428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:609-834
               
               
               Cow position:chr3:29644396-29644174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 92

               
               
               Conread position:609-834
               
               
               Cow position:chr3:64171274-64171046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):29, 93

               
               
               Conread position:614-834
               
               
               Cow position:chr3:79593185-79592961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):33, 57

               
               
               Conread position:616-814
               
               
               Cow position:chr3:55894863-55894660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):30, 57

               
               
               Conread position:619-834
               
               
               Cow position:chr3:31748689-31748475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):29, 85

               
               
               Conread position:620-835
               
               
               Cow position:chr3:47341245-47341461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):27, 82

               
               
               Conread position:622-831
               
               
               Cow position:chr3:46752653-46752439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):15, 85

               
               
               Conread position:645-824
               
               
               Cow position:chr3:20888650-20888828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:645-824
               
               
               Cow position:chr3:28639484-28639303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):14, 53

               
               
               Conread position:645-834
               
               
               Cow position:chr3:55245343-55245155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:653-804
               
               
               Cow position:chr3:63055352-63055504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):114, 43

               
               
               Conread position:666-808
               
               
               Cow position:chr3:57835608-57835749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:666-816
               
               
               Cow position:chr3:73416046-73415897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):139, 30

               
               
               Conread position:666-824
               
               
               Cow position:chr3:18461156-18461312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:666-833
               
               
               Cow position:chr3:62794289-62794456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):101, 30

               
               
               Conread position:666-834
               
               
               Cow position:chr3:5886482-5886315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr3:34457883-34458050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr3:59864537-59864371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:688-834
               
               
               Cow position:chr3:35973064-35972919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 8

               
               
               Conread position:689-834
               
               
               Cow position:chr3:70890224-70890082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:694-807
               
               
               Cow position:chr3:70276681-70276794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:697-834
               
               
               Cow position:chr3:6441616-6441479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-808
               
               
               Cow position:chr3:23497874-23497984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-815
               
               
               Cow position:chr3:27155951-27155834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-822
               
               
               Cow position:chr3:12667190-12667066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr3:2867808-2867944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:701-806
               
               
               Cow position:chr3:40741792-40741897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:702-834
               
               
               Cow position:chr3:36120832-36120700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:703-834
               
               
               Cow position:chr3:65084338-65084207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:704-823
               
               
               Cow position:chr3:82888943-82888824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:710-830
               
               
               Cow position:chr3:36516702-36516822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:714-825
               
               
               Cow position:chr3:4162016-4162127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:88
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:716-825
               
               
               Cow position:chr3:21102860-21102969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:726-832
               
               
               Cow position:chr3:26834052-26834154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:10-387
               
               
               Cow position:chr4:45235288-45235698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):66, 46

               
               
               Conread position:36-834
               
               
               Cow position:chr4:18267534-18266713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:823
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 687

               
               
               Conread position:65-644
               
               
               Cow position:chr4:26400217-26399606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:403
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):58, 8

               
               
               Conread position:69-808
               
               
               Cow position:chr4:12605431-12606218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:801
               
               
               Alignm identity:533
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 38

               
               
               Conread position:73-223
               
               
               Cow position:chr4:43370362-43370515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:73-337
               
               
               Cow position:chr4:30004559-30004839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:73-358
               
               
               Cow position:chr4:54494334-54494013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):66, 28

               
               
               Conread position:73-364
               
               
               Cow position:chr4:65464600-65464914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:73-365
               
               
               Cow position:chr4:488999-489321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:73-382
               
               
               Cow position:chr4:6547237-6547585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:73-382
               
               
               Cow position:chr4:23647337-23647671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 40

               
               
               Conread position:73-382
               
               
               Cow position:chr4:43476348-43476687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:73-393
               
               
               Cow position:chr4:68362428-68362082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:73-417
               
               
               Cow position:chr4:25352172-25352520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:251
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:73-446
               
               
               Cow position:chr4:28613314-28612921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:268
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):24, 75

               
               
               Conread position:73-452
               
               
               Cow position:chr4:46526494-46526098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):19, 59

               
               
               Conread position:73-453
               
               
               Cow position:chr4:24179026-24179455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:73-528
               
               
               Cow position:chr4:2601651-2601157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 27

               
               
               Conread position:73-528
               
               
               Cow position:chr4:11201314-11200813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:338
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:73-551
               
               
               Cow position:chr4:15802387-15802920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:355
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:73-580
               
               
               Cow position:chr4:4850793-4850225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:382
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-598
               
               
               Cow position:chr4:19957479-19956887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:405
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):16, 22

               
               
               Conread position:73-614
               
               
               Cow position:chr4:33171591-33171002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:388
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):21, 40

               
               
               Conread position:73-644
               
               
               Cow position:chr4:36755211-36754601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 34

               
               
               Conread position:73-727
               
               
               Cow position:chr4:2003148-2003820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:436
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):108, 34

               
               
               Conread position:73-754
               
               
               Cow position:chr4:4085926-4086660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:528
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 37

               
               
               Conread position:73-766
               
               
               Cow position:chr4:16966856-16967591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:755
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:73-808
               
               
               Cow position:chr4:30287602-30286858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:771
               
               
               Alignm identity:485
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):19, 29

               
               
               Conread position:73-822
               
               
               Cow position:chr4:65431673-65430914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr4:18812785-18813588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:819
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 22

               
               
               Conread position:73-834
               
               
               Cow position:chr4:26745953-26745142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:817
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 38

               
               
               Conread position:73-834
               
               
               Cow position:chr4:33020192-33021011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:823
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 134

               
               
               Conread position:73-834
               
               
               Cow position:chr4:33069390-33070220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:835
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 18

               
               
               Conread position:74-410
               
               
               Cow position:chr4:22236980-22237347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):73, 33

               
               
               Conread position:74-456
               
               
               Cow position:chr4:43898446-43898867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:301
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):18, 37

               
               
               Conread position:74-822
               
               
               Cow position:chr4:47752744-47751959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:800
               
               
               Alignm identity:547
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 33

               
               
               Conread position:74-825
               
               
               Cow position:chr4:17877408-17876599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:821
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 21

               
               
               Conread position:74-825
               
               
               Cow position:chr4:54931177-54931969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:817
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 38

               
               
               Conread position:74-834
               
               
               Cow position:chr4:5610576-5611378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:809
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 132

               
               
               Conread position:74-834
               
               
               Cow position:chr4:43316205-43317028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:827
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 17

               
               
               Conread position:75-746
               
               
               Cow position:chr4:962155-962877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 37

               
               
               Conread position:75-834
               
               
               Cow position:chr4:31561788-31562608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:826
               
               
               Alignm identity:558
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 13

               
               
               Conread position:76-387
               
               
               Cow position:chr4:37703757-37703415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):63, 31

               
               
               Conread position:77-633
               
               
               Cow position:chr4:18845238-18844635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:406
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):67, 30

               
               
               Conread position:77-825
               
               
               Cow position:chr4:38181179-38180396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 19

               
               
               Conread position:94-808
               
               
               Cow position:chr4:42863568-42862837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 18

               
               
               Conread position:96-819
               
               
               Cow position:chr4:19237481-19236706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:541
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 33

               
               
               Conread position:105-522
               
               
               Cow position:chr4:39458074-39457612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:322
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):35, 17

               
               
               Conread position:119-411
               
               
               Cow position:chr4:31348779-31349095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):40, 9

               
               
               Conread position:119-834
               
               
               Cow position:chr4:48030246-48029483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:774
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 9

               
               
               Conread position:120-312
               
               
               Cow position:chr4:14152512-14152322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 41

               
               
               Conread position:122-522
               
               
               Cow position:chr4:32249880-32249444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:297
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):25, 130

               
               
               Conread position:123-457
               
               
               Cow position:chr4:22743770-22743408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:262
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):21, 37

               
               
               Conread position:123-585
               
               
               Cow position:chr4:22850291-22850791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:337
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):17, 443

               
               
               Conread position:123-778
               
               
               Cow position:chr4:1499708-1500393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 461

               
               
               Conread position:123-804
               
               
               Cow position:chr4:3252168-3252899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:532
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:139-337
               
               
               Cow position:chr4:24002553-24002763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:141-832
               
               
               Cow position:chr4:30508565-30507819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:756
               
               
               Alignm identity:533
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 15

               
               
               Conread position:141-835
               
               
               Cow position:chr4:66173960-66174698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:142-834
               
               
               Cow position:chr4:10044404-10045146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 18

               
               
               Conread position:143-356
               
               
               Cow position:chr4:14142680-14142455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):94, 13

               
               
               Conread position:143-372
               
               
               Cow position:chr4:8377776-8378026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-375
               
               
               Cow position:chr4:19006856-19006603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr4:7139002-7139262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr4:29560165-29560425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr4:46585543-46585803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-387
               
               
               Cow position:chr4:18973856-18973593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-411
               
               
               Cow position:chr4:58485107-58485395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-433
               
               
               Cow position:chr4:11872503-11872806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-436
               
               
               Cow position:chr4:61066033-61065716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-445
               
               
               Cow position:chr4:22014060-22014389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-446
               
               
               Cow position:chr4:14684575-14684241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr4:12033701-12033367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-457
               
               
               Cow position:chr4:47269533-47269198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):8, 295

               
               
               Conread position:143-464
               
               
               Cow position:chr4:48152962-48153297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-548
               
               
               Cow position:chr4:33180936-33181366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 9

               
               
               Conread position:143-579
               
               
               Cow position:chr4:65816307-65816772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:143-590
               
               
               Cow position:chr4:30170995-30171491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:346
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-644
               
               
               Cow position:chr4:26874544-26875091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:366
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-645
               
               
               Cow position:chr4:15056167-15055624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-685
               
               
               Cow position:chr4:20616354-20616943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-714
               
               
               Cow position:chr4:11193325-11192695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-741
               
               
               Cow position:chr4:3849959-3849315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:143-765
               
               
               Cow position:chr4:60856124-60855450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-806
               
               
               Cow position:chr4:34713180-34712468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-815
               
               
               Cow position:chr4:42330367-42331081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:143-815
               
               
               Cow position:chr4:44901628-44900915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-819
               
               
               Cow position:chr4:27178188-27177464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-822
               
               
               Cow position:chr4:22317103-22316362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-825
               
               
               Cow position:chr4:10885001-10884269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr4:17235383-17234657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-825
               
               
               Cow position:chr4:17833485-17834217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr4:61242632-61241913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:143-829
               
               
               Cow position:chr4:58292094-58291368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-832
               
               
               Cow position:chr4:3475034-3474320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr4:1027862-1028599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:547
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-834
               
               
               Cow position:chr4:3070235-3069543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr4:3450162-3449417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-834
               
               
               Cow position:chr4:22905037-22904328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr4:29530095-29530836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr4:33496923-33496182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 10

               
               
               Conread position:143-834
               
               
               Cow position:chr4:44733980-44733247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:144-453
               
               
               Cow position:chr4:39421958-39421618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:144-534
               
               
               Cow position:chr4:22354313-22353900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:274
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):76, 12

               
               
               Conread position:144-580
               
               
               Cow position:chr4:8769397-8768927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 9

               
               
               Conread position:144-627
               
               
               Cow position:chr4:21056587-21056088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:325
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):81, 9

               
               
               Conread position:144-815
               
               
               Cow position:chr4:6167608-6168326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 12

               
               
               Conread position:144-819
               
               
               Cow position:chr4:4379737-4379027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 18

               
               
               Conread position:144-825
               
               
               Cow position:chr4:6630950-6631682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:464
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:144-830
               
               
               Cow position:chr4:27337574-27336839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:145-337
               
               
               Cow position:chr4:36892040-36891833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-451
               
               
               Cow position:chr4:14164148-14163811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-468
               
               
               Cow position:chr4:47774229-47774584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):6, 25

               
               
               Conread position:145-522
               
               
               Cow position:chr4:67767781-67767371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:277
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):77, 16

               
               
               Conread position:145-546
               
               
               Cow position:chr4:34223296-34222875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-579
               
               
               Cow position:chr4:68796066-68795597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:330
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:145-735
               
               
               Cow position:chr4:23150298-23150937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:145-761
               
               
               Cow position:chr4:25983642-25982976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 153

               
               
               Conread position:145-787
               
               
               Cow position:chr4:26548825-26548139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 16

               
               
               Conread position:145-829
               
               
               Cow position:chr4:55670602-55669871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 14

               
               
               Conread position:145-831
               
               
               Cow position:chr4:8649438-8648704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 11

               
               
               Conread position:145-834
               
               
               Cow position:chr4:606967-606232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr4:64874667-64875402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:146-382
               
               
               Cow position:chr4:49032046-49031792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:146-388
               
               
               Cow position:chr4:22841756-22841503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:146-645
               
               
               Cow position:chr4:64791304-64790793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 14

               
               
               Conread position:146-719
               
               
               Cow position:chr4:48497041-48496413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 606

               
               
               Conread position:146-825
               
               
               Cow position:chr4:25596123-25596855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 184

               
               
               Conread position:146-834
               
               
               Cow position:chr4:64039543-64038870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 74

               
               
               Conread position:147-381
               
               
               Cow position:chr4:43234872-43235120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-463
               
               
               Cow position:chr4:42480590-42480249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:147-522
               
               
               Cow position:chr4:43896135-43896554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-528
               
               
               Cow position:chr4:27997129-27996721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 219

               
               
               Conread position:147-537
               
               
               Cow position:chr4:61235789-61236210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 383

               
               
               Conread position:147-540
               
               
               Cow position:chr4:49745033-49744601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:298
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-542
               
               
               Cow position:chr4:2190936-2191367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:296
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-546
               
               
               Cow position:chr4:23494322-23493905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:293
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):12, 218

               
               
               Conread position:147-580
               
               
               Cow position:chr4:16642177-16641702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:147-598
               
               
               Cow position:chr4:41097329-41096841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 333

               
               
               Conread position:147-814
               
               
               Cow position:chr4:11100238-11100951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 278

               
               
               Conread position:147-825
               
               
               Cow position:chr4:23303996-23304711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 23

               
               
               Conread position:147-834
               
               
               Cow position:chr4:359244-358506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 431

               
               
               Conread position:147-834
               
               
               Cow position:chr4:2349389-2350095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 75

               
               
               Conread position:147-834
               
               
               Cow position:chr4:3284002-3284736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 590

               
               
               Conread position:147-834
               
               
               Cow position:chr4:27540025-27539290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 47

               
               
               Conread position:147-834
               
               
               Cow position:chr4:36025909-36026649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 608

               
               
               Conread position:147-834
               
               
               Cow position:chr4:36899738-36898998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 287

               
               
               Conread position:147-834
               
               
               Cow position:chr4:43884455-43883715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 573

               
               
               Conread position:147-834
               
               
               Cow position:chr4:54190126-54189412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:543
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 237

               
               
               Conread position:147-834
               
               
               Cow position:chr4:54757902-54758612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 39

               
               
               Conread position:147-834
               
               
               Cow position:chr4:57988105-57987365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 608

               
               
               Conread position:148-369
               
               
               Cow position:chr4:13139928-13140156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 113

               
               
               Conread position:148-374
               
               
               Cow position:chr4:5284478-5284729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-451
               
               
               Cow position:chr4:55954727-55954402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-548
               
               
               Cow position:chr4:46668013-46667584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-692
               
               
               Cow position:chr4:6034685-6035265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:378
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:148-735
               
               
               Cow position:chr4:3354585-3355216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 350

               
               
               Conread position:148-829
               
               
               Cow position:chr4:27287746-27288473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 359

               
               
               Conread position:148-834
               
               
               Cow position:chr4:67383625-67382908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 76

               
               
               Conread position:148-849
               
               
               Cow position:chr4:60625185-60625919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:150-377
               
               
               Cow position:chr4:21532226-21532468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):71, 8

               
               
               Conread position:150-824
               
               
               Cow position:chr4:28835918-28835193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 9

               
               
               Conread position:150-834
               
               
               Cow position:chr4:43840624-43841351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:539
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 9

               
               
               Conread position:152-767
               
               
               Cow position:chr4:65581861-65581203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 78

               
               
               Conread position:153-801
               
               
               Cow position:chr4:2263355-2264057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 600

               
               
               Conread position:153-822
               
               
               Cow position:chr4:52696599-52695898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 89

               
               
               Conread position:154-261
               
               
               Cow position:chr4:49814607-49814717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:154-693
               
               
               Cow position:chr4:16832199-16832784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:389
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):5, 40

               
               
               Conread position:154-736
               
               
               Cow position:chr4:29034959-29034348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:409
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):27, 136

               
               
               Conread position:155-408
               
               
               Cow position:chr4:51122388-51122112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:155-522
               
               
               Cow position:chr4:46529900-46530293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:273
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):67, 279

               
               
               Conread position:155-825
               
               
               Cow position:chr4:37786652-37785932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 323

               
               
               Conread position:158-293
               
               
               Cow position:chr4:19141368-19141223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-319
               
               
               Cow position:chr4:10055603-10055432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):62, 154

               
               
               Conread position:158-369
               
               
               Cow position:chr4:28855460-28855227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-369
               
               
               Cow position:chr4:33146207-33145974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-369
               
               
               Cow position:chr4:38834764-38834997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-373
               
               
               Cow position:chr4:16859371-16859606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr4:120340-120586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr4:4923922-4924168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr4:26131508-26131262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr4:27655437-27655191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr4:53316687-53316933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:158-408
               
               
               Cow position:chr4:3800939-3801212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-409
               
               
               Cow position:chr4:61400007-61400280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):7, 110

               
               
               Conread position:158-410
               
               
               Cow position:chr4:30573308-30573029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr4:30474730-30474402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr4:45114041-45114372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr4:64156078-64155751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-466
               
               
               Cow position:chr4:7806518-7806178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:247
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:158-466
               
               
               Cow position:chr4:61817054-61817393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:240
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):64, 329

               
               
               Conread position:158-467
               
               
               Cow position:chr4:5882825-5882484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:158-467
               
               
               Cow position:chr4:6446110-6445770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-523
               
               
               Cow position:chr4:533640-533241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:273
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-526
               
               
               Cow position:chr4:63195233-63195632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:272
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):64, 37

               
               
               Conread position:158-533
               
               
               Cow position:chr4:1007242-1006833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-534
               
               
               Cow position:chr4:3129205-3128794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):64, 322

               
               
               Conread position:158-540
               
               
               Cow position:chr4:652377-651957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:282
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-540
               
               
               Cow position:chr4:5441311-5441731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-540
               
               
               Cow position:chr4:54161717-54162133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:290
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):64, 40

               
               
               Conread position:158-540
               
               
               Cow position:chr4:60579780-60580200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:158-555
               
               
               Cow position:chr4:62570041-62569620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):32, 258

               
               
               Conread position:158-580
               
               
               Cow position:chr4:162430-161966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:315
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):64, 269

               
               
               Conread position:158-580
               
               
               Cow position:chr4:10403365-10403831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:313
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr4:10553577-10553132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:303
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):63, 154

               
               
               Conread position:158-633
               
               
               Cow position:chr4:60224528-60225045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 83

               
               
               Conread position:158-645
               
               
               Cow position:chr4:47116186-47115650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-645
               
               
               Cow position:chr4:62453638-62454172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 343

               
               
               Conread position:158-645
               
               
               Cow position:chr4:62962013-62962544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:158-685
               
               
               Cow position:chr4:15618044-15617463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-692
               
               
               Cow position:chr4:2226415-2227002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 55

               
               
               Conread position:158-714
               
               
               Cow position:chr4:24140225-24139613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 331

               
               
               Conread position:158-729
               
               
               Cow position:chr4:18331436-18330812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 589

               
               
               Conread position:158-734
               
               
               Cow position:chr4:65198451-65199080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 589

               
               
               Conread position:158-737
               
               
               Cow position:chr4:10122756-10122128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 467

               
               
               Conread position:158-772
               
               
               Cow position:chr4:35144195-35144862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 335

               
               
               Conread position:158-782
               
               
               Cow position:chr4:20630762-20630117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:158-796
               
               
               Cow position:chr4:38584227-38583540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 46

               
               
               Conread position:158-818
               
               
               Cow position:chr4:46492284-46491588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:447
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):67, 82

               
               
               Conread position:158-819
               
               
               Cow position:chr4:41962246-41961533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 594

               
               
               Conread position:158-825
               
               
               Cow position:chr4:8678151-8677432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 329

               
               
               Conread position:158-825
               
               
               Cow position:chr4:15873301-15874005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 131

               
               
               Conread position:158-825
               
               
               Cow position:chr4:44777841-44778563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 597

               
               
               Conread position:158-829
               
               
               Cow position:chr4:60651932-60651219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 154

               
               
               Conread position:158-830
               
               
               Cow position:chr4:40218188-40217464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr4:4185517-4184805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 118

               
               
               Conread position:158-834
               
               
               Cow position:chr4:6265882-6266592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 40

               
               
               Conread position:158-834
               
               
               Cow position:chr4:9041296-9040567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr4:9357588-9356859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr4:10424827-10424113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 65

               
               
               Conread position:158-834
               
               
               Cow position:chr4:16062600-16061917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):389, 453

               
               
               Conread position:158-834
               
               
               Cow position:chr4:17033151-17033880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr4:17775413-17776140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 189

               
               
               Conread position:158-834
               
               
               Cow position:chr4:17821880-17821151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr4:20656714-20657439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 216

               
               
               Conread position:158-834
               
               
               Cow position:chr4:21342423-21341694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr4:27292565-27293264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 103

               
               
               Conread position:158-834
               
               
               Cow position:chr4:47264127-47263397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 596

               
               
               Conread position:158-834
               
               
               Cow position:chr4:48733026-48732298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-834
               
               
               Cow position:chr4:67394558-67393848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 67

               
               
               Conread position:159-387
               
               
               Cow position:chr4:50978098-50977855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):65, 34

               
               
               Conread position:159-438
               
               
               Cow position:chr4:23508545-23508237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:159-532
               
               
               Cow position:chr4:11918603-11919009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):63, 15

               
               
               Conread position:159-549
               
               
               Cow position:chr4:52648695-52648290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):81, 66

               
               
               Conread position:159-580
               
               
               Cow position:chr4:38564345-38564810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:312
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:159-644
               
               
               Cow position:chr4:1368725-1369239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 38

               
               
               Conread position:159-786
               
               
               Cow position:chr4:1927286-1927966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 594

               
               
               Conread position:159-832
               
               
               Cow position:chr4:67600330-67601043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:159-834
               
               
               Cow position:chr4:18335598-18336336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 598

               
               
               Conread position:160-293
               
               
               Cow position:chr4:12588941-12588798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:160-337
               
               
               Cow position:chr4:13979387-13979195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):62, 80

               
               
               Conread position:160-357
               
               
               Cow position:chr4:15462916-15463130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-387
               
               
               Cow position:chr4:7583565-7583320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-387
               
               
               Cow position:chr4:16735658-16735411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):55, 41

               
               
               Conread position:160-410
               
               
               Cow position:chr4:67652088-67652361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-537
               
               
               Cow position:chr4:45499502-45499117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):105, 111

               
               
               Conread position:160-580
               
               
               Cow position:chr4:2140405-2139946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:325
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):65, 41

               
               
               Conread position:160-580
               
               
               Cow position:chr4:54695684-54696147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:303
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):62, 309

               
               
               Conread position:160-635
               
               
               Cow position:chr4:20790135-20789622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:327
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 367

               
               
               Conread position:160-636
               
               
               Cow position:chr4:24020776-24021301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:345
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):62, 226

               
               
               Conread position:160-693
               
               
               Cow position:chr4:10613860-10614415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:369
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:160-757
               
               
               Cow position:chr4:9713061-9712432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 138

               
               
               Conread position:160-765
               
               
               Cow position:chr4:59355560-59356206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:411
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):61, 473

               
               
               Conread position:160-807
               
               
               Cow position:chr4:11104362-11105030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:419
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):59, 81

               
               
               Conread position:160-807
               
               
               Cow position:chr4:25972283-25971613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 284

               
               
               Conread position:160-824
               
               
               Cow position:chr4:8674076-8673368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 257

               
               
               Conread position:160-824
               
               
               Cow position:chr4:11107743-11108446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 178

               
               
               Conread position:160-832
               
               
               Cow position:chr4:1935171-1935902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:473
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):60, 356

               
               
               Conread position:160-832
               
               
               Cow position:chr4:48503189-48502479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 372

               
               
               Conread position:160-834
               
               
               Cow position:chr4:4419394-4418670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 593

               
               
               Conread position:160-834
               
               
               Cow position:chr4:28173524-28174241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 26

               
               
               Conread position:160-834
               
               
               Cow position:chr4:46711256-46711975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 561

               
               
               Conread position:160-835
               
               
               Cow position:chr4:7214442-7215156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 92

               
               
               Conread position:161-382
               
               
               Cow position:chr4:14543089-14543329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 80

               
               
               Conread position:161-834
               
               
               Cow position:chr4:7779744-7779021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 13

               
               
               Conread position:162-387
               
               
               Cow position:chr4:2122001-2122222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):119, 61

               
               
               Conread position:162-477
               
               
               Cow position:chr4:33399125-33399474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:162-811
               
               
               Cow position:chr4:9821482-9820793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 268

               
               
               Conread position:163-541
               
               
               Cow position:chr4:25578921-25578529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:276
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):73, 34

               
               
               Conread position:163-834
               
               
               Cow position:chr4:12237904-12238606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 185

               
               
               Conread position:164-540
               
               
               Cow position:chr4:61625241-61625633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:280
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):61, 193

               
               
               Conread position:165-452
               
               
               Cow position:chr4:34384072-34384383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):59, 173

               
               
               Conread position:165-683
               
               
               Cow position:chr4:1061535-1062067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:346
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):59, 124

               
               
               Conread position:166-548
               
               
               Cow position:chr4:58688557-58688974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:290
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):49, 103

               
               
               Conread position:169-453
               
               
               Cow position:chr4:8700477-8700162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):50, 84

               
               
               Conread position:169-811
               
               
               Cow position:chr4:65919008-65918334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 29

               
               
               Conread position:169-815
               
               
               Cow position:chr4:35929811-35929129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 139

               
               
               Conread position:170-824
               
               
               Cow position:chr4:5874405-5873738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 123

               
               
               Conread position:171-834
               
               
               Cow position:chr4:54147096-54147787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 128

               
               
               Conread position:174-644
               
               
               Cow position:chr4:3961565-3962072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:343
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:180-825
               
               
               Cow position:chr4:18005042-18004345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 572

               
               
               Conread position:182-834
               
               
               Cow position:chr4:62906696-62907400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 570

               
               
               Conread position:186-645
               
               
               Cow position:chr4:47949017-47949524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:337
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:186-726
               
               
               Cow position:chr4:59783994-59783404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:388
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):37, 173

               
               
               Conread position:189-468
               
               
               Cow position:chr4:68386844-68386532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 79

               
               
               Conread position:189-579
               
               
               Cow position:chr4:61449835-61449396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:302
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:189-834
               
               
               Cow position:chr4:16363519-16362823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 530

               
               
               Conread position:190-830
               
               
               Cow position:chr4:26468541-26467873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:201-410
               
               
               Cow position:chr4:509459-509237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 95

               
               
               Conread position:208-652
               
               
               Cow position:chr4:17751650-17752127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:319
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):30, 133

               
               
               Conread position:208-825
               
               
               Cow position:chr4:20243448-20242786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 537

               
               
               Conread position:208-834
               
               
               Cow position:chr4:3170572-3169902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 271

               
               
               Conread position:208-834
               
               
               Cow position:chr4:21297493-21298160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 533

               
               
               Conread position:216-627
               
               
               Cow position:chr4:59118829-59119265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):7, 339

               
               
               Conread position:218-788
               
               
               Cow position:chr4:10540964-10541564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:392
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):64, 247

               
               
               Conread position:221-541
               
               
               Cow position:chr4:11025940-11026286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):15, 179

               
               
               Conread position:221-795
               
               
               Cow position:chr4:34700280-34700886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 20

               
               
               Conread position:221-822
               
               
               Cow position:chr4:23451747-23452380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 263

               
               
               Conread position:221-834
               
               
               Cow position:chr4:6487089-6487746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 308

               
               
               Conread position:222-571
               
               
               Cow position:chr4:7048793-7049170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 162

               
               
               Conread position:223-751
               
               
               Cow position:chr4:61272314-61272853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:366
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):17, 49

               
               
               Conread position:224-717
               
               
               Cow position:chr4:36812285-36811759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:339
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):14, 109

               
               
               Conread position:227-761
               
               
               Cow position:chr4:3971654-3971083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:351
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):24, 489

               
               
               Conread position:230-877
               
               
               Cow position:chr4:12841210-12840526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 29

               
               
               Conread position:235-803
               
               
               Cow position:chr4:26885660-26886271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 508

               
               
               Conread position:235-825
               
               
               Cow position:chr4:6862979-6863601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 68

               
               
               Conread position:235-825
               
               
               Cow position:chr4:10822619-10823236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 67

               
               
               Conread position:241-834
               
               
               Cow position:chr4:5914580-5913973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:402
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):53, 226

               
               
               Conread position:244-794
               
               
               Cow position:chr4:44646493-44647089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:388
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):35, 416

               
               
               Conread position:248-572
               
               
               Cow position:chr4:19141244-19140902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 322

               
               
               Conread position:248-578
               
               
               Cow position:chr4:22724183-22723836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):47, 337

               
               
               Conread position:248-635
               
               
               Cow position:chr4:16605937-16606323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 29

               
               
               Conread position:249-811
               
               
               Cow position:chr4:65842656-65843245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:253-645
               
               
               Cow position:chr4:17473319-17472900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:271
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):29, 179

               
               
               Conread position:253-800
               
               
               Cow position:chr4:23525828-23525242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 400

               
               
               Conread position:253-828
               
               
               Cow position:chr4:25878660-25878042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:254-669
               
               
               Cow position:chr4:54973293-54972842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:302
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):37, 445

               
               
               Conread position:258-548
               
               
               Cow position:chr4:34166815-34167111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):122, 27

               
               
               Conread position:258-834
               
               
               Cow position:chr4:55509620-55510213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 11

               
               
               Conread position:268-769
               
               
               Cow position:chr4:33564179-33563642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:340
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 56

               
               
               Conread position:269-710
               
               
               Cow position:chr4:52086378-52085902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 462

               
               
               Conread position:273-772
               
               
               Cow position:chr4:25822803-25823328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:328
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 139

               
               
               Conread position:273-818
               
               
               Cow position:chr4:44593185-44593738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:373
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:277-796
               
               
               Cow position:chr4:66900819-66900287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:351
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):62, 141

               
               
               Conread position:279-802
               
               
               Cow position:chr4:45653963-45654521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 451

               
               
               Conread position:285-831
               
               
               Cow position:chr4:1239227-1239794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 43

               
               
               Conread position:289-721
               
               
               Cow position:chr4:41038026-41037562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 439

               
               
               Conread position:289-833
               
               
               Cow position:chr4:22073898-22074450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 189

               
               
               Conread position:290-627
               
               
               Cow position:chr4:20091300-20090944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 271

               
               
               Conread position:290-759
               
               
               Cow position:chr4:38153100-38153606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:344
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):49, 447

               
               
               Conread position:290-788
               
               
               Cow position:chr4:10135005-10135534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 444

               
               
               Conread position:290-834
               
               
               Cow position:chr4:35868387-35867838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 54

               
               
               Conread position:291-596
               
               
               Cow position:chr4:21364267-21363952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):51, 151

               
               
               Conread position:291-655
               
               
               Cow position:chr4:6806506-6806111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:291-692
               
               
               Cow position:chr4:33628833-33629270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:288
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:291-738
               
               
               Cow position:chr4:15463233-15463708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:318
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):48, 400

               
               
               Conread position:291-834
               
               
               Cow position:chr4:54810648-54811240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 539

               
               
               Conread position:292-834
               
               
               Cow position:chr4:40697269-40697846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 443

               
               
               Conread position:292-834
               
               
               Cow position:chr4:41472632-41473209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 124

               
               
               Conread position:295-819
               
               
               Cow position:chr4:41957952-41957398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 435

               
               
               Conread position:297-834
               
               
               Cow position:chr4:27882081-27881513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 434

               
               
               Conread position:299-825
               
               
               Cow position:chr4:65890972-65890428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 153

               
               
               Conread position:304-510
               
               
               Cow position:chr4:4126920-4126701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:307-834
               
               
               Cow position:chr4:6000251-6000822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 224

               
               
               Conread position:311-778
               
               
               Cow position:chr4:33831251-33831753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 424

               
               
               Conread position:311-800
               
               
               Cow position:chr4:14919215-14918713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 130

               
               
               Conread position:316-834
               
               
               Cow position:chr4:34175808-34176371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 427

               
               
               Conread position:319-806
               
               
               Cow position:chr4:38909671-38909159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:345
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):20, 327

               
               
               Conread position:323-742
               
               
               Cow position:chr4:13254826-13254385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 25

               
               
               Conread position:328-834
               
               
               Cow position:chr4:45268287-45268791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):336, 0

               
               
               Conread position:332-748
               
               
               Cow position:chr4:12455116-12454682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:336-678
               
               
               Cow position:chr4:41130997-41131371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:336-834
               
               
               Cow position:chr4:5578672-5579171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 189

               
               
               Conread position:336-834
               
               
               Cow position:chr4:31484832-31485361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 395

               
               
               Conread position:336-856
               
               
               Cow position:chr4:30540517-30541066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:297
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):49, 389

               
               
               Conread position:339-830
               
               
               Cow position:chr4:4673432-4673952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 124

               
               
               Conread position:341-522
               
               
               Cow position:chr4:25192739-25192925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):74, 115

               
               
               Conread position:348-825
               
               
               Cow position:chr4:32962-33455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 107

               
               
               Conread position:348-834
               
               
               Cow position:chr4:21843382-21843897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 383

               
               
               Conread position:351-815
               
               
               Cow position:chr4:1187223-1187714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:334
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:354-834
               
               
               Cow position:chr4:1047132-1047630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 318

               
               
               Conread position:369-834
               
               
               Cow position:chr4:27518260-27518751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 354

               
               
               Conread position:371-799
               
               
               Cow position:chr4:50977638-50977207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 150

               
               
               Conread position:374-833
               
               
               Cow position:chr4:39840823-39840336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:322
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 86

               
               
               Conread position:374-834
               
               
               Cow position:chr4:18096505-18096991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 22

               
               
               Conread position:380-825
               
               
               Cow position:chr4:19206797-19206327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:304
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):35, 243

               
               
               Conread position:386-822
               
               
               Cow position:chr4:32215248-32214787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 339

               
               
               Conread position:409-724
               
               
               Cow position:chr4:54098691-54099023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 20

               
               
               Conread position:413-580
               
               
               Cow position:chr4:1462686-1462863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:421-720
               
               
               Cow position:chr4:19107996-19108319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):9, 299

               
               
               Conread position:421-815
               
               
               Cow position:chr4:41190113-41190520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 125

               
               
               Conread position:421-834
               
               
               Cow position:chr4:6548091-6547656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr4:20027465-20027901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr4:27892129-27891694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr4:47055370-47055805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 207

               
               
               Conread position:422-811
               
               
               Cow position:chr4:18301187-18301592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):59, 11

               
               
               Conread position:423-831
               
               
               Cow position:chr4:55273207-55272778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:297
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):7, 34

               
               
               Conread position:425-789
               
               
               Cow position:chr4:105829-106204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 153

               
               
               Conread position:426-818
               
               
               Cow position:chr4:45954728-45954323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:279
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):49, 118

               
               
               Conread position:430-826
               
               
               Cow position:chr4:36669619-36669220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 276

               
               
               Conread position:446-831
               
               
               Cow position:chr4:5047492-5047906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 281

               
               
               Conread position:447-787
               
               
               Cow position:chr4:14737069-14736713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):77, 153

               
               
               Conread position:456-834
               
               
               Cow position:chr4:18099884-18100284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 265

               
               
               Conread position:468-782
               
               
               Cow position:chr4:68386330-68386020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 39

               
               
               Conread position:488-834
               
               
               Cow position:chr4:37703241-37702877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 196

               
               
               Conread position:491-741
               
               
               Cow position:chr4:19737009-19736740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):34, 216

               
               
               Conread position:491-819
               
               
               Cow position:chr4:44957428-44957775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 232

               
               
               Conread position:491-825
               
               
               Cow position:chr4:29604491-29604844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr4:3128799-3128436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 226

               
               
               Conread position:492-834
               
               
               Cow position:chr4:9004750-9005111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 227

               
               
               Conread position:493-771
               
               
               Cow position:chr4:13140442-13140730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):31, 11

               
               
               Conread position:499-833
               
               
               Cow position:chr4:42103401-42103067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):63, 14

               
               
               Conread position:505-825
               
               
               Cow position:chr4:61595750-61596070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 14

               
               
               Conread position:505-867
               
               
               Cow position:chr4:43761327-43760958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 31

               
               
               Conread position:506-828
               
               
               Cow position:chr4:23646249-23646579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:512-802
               
               
               Cow position:chr4:68108622-68108923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):12, 197

               
               
               Conread position:513-834
               
               
               Cow position:chr4:58882436-58882762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:521-829
               
               
               Cow position:chr4:43896766-43897080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:522-834
               
               
               Cow position:chr4:41976710-41977024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:534-771
               
               
               Cow position:chr4:42405145-42405390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):29, 16

               
               
               Conread position:537-763
               
               
               Cow position:chr4:4463877-4463641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 173

               
               
               Conread position:538-834
               
               
               Cow position:chr4:19254648-19254349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 165

               
               
               Conread position:545-819
               
               
               Cow position:chr4:43899211-43899482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):28, 148

               
               
               Conread position:545-834
               
               
               Cow position:chr4:64800031-64799740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):28, 159

               
               
               Conread position:548-768
               
               
               Cow position:chr4:16833215-16832994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):103, 20

               
               
               Conread position:569-831
               
               
               Cow position:chr4:20184378-20184122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):85, 58

               
               
               Conread position:569-834
               
               
               Cow position:chr4:63001028-63000758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:571-834
               
               
               Cow position:chr4:55520159-55519888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):60, 136

               
               
               Conread position:579-808
               
               
               Cow position:chr4:23437887-23438118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):62, 121

               
               
               Conread position:590-825
               
               
               Cow position:chr4:8935486-8935244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:591-825
               
               
               Cow position:chr4:8768622-8768387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):57, 111

               
               
               Conread position:591-834
               
               
               Cow position:chr4:532914-532666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-834
               
               
               Cow position:chr4:30474303-30474055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:592-825
               
               
               Cow position:chr4:14141970-14141739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):59, 75

               
               
               Conread position:594-819
               
               
               Cow position:chr4:15814634-15814864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):54, 111

               
               
               Conread position:594-819
               
               
               Cow position:chr4:21362383-21362151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):52, 112

               
               
               Conread position:600-834
               
               
               Cow position:chr4:1436627-1436872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):46, 105

               
               
               Conread position:608-815
               
               
               Cow position:chr4:9796736-9796947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):29, 65

               
               
               Conread position:609-825
               
               
               Cow position:chr4:50761530-50761744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 94

               
               
               Conread position:610-771
               
               
               Cow position:chr4:1356090-1356255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 91

               
               
               Conread position:610-834
               
               
               Cow position:chr4:13464662-13464434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):36, 94

               
               
               Conread position:645-824
               
               
               Cow position:chr4:5486580-5486758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:645-825
               
               
               Cow position:chr4:54972274-54972096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:645-834
               
               
               Cow position:chr4:30578536-30578348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:646-822
               
               
               Cow position:chr4:62557760-62557935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:661-822
               
               
               Cow position:chr4:12583829-12583990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:666-834
               
               
               Cow position:chr4:16606934-16606768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:668-834
               
               
               Cow position:chr4:56013828-56013993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:671-825
               
               
               Cow position:chr4:14818146-14818300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):91, 25

               
               
               Conread position:675-825
               
               
               Cow position:chr4:16734839-16734988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:696-834
               
               
               Cow position:chr4:10121664-10121802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr4:2227220-2227356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr4:25129534-25129398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:701-834
               
               
               Cow position:chr4:49744530-49744397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:702-825
               
               
               Cow position:chr4:16641365-16641242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:708-834
               
               
               Cow position:chr4:161911-161785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-387
               
               
               Cow position:chr5:65593500-65593095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):159, 99

               
               
               Conread position:1-454
               
               
               Cow position:chr5:41951454-41951942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:334
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):98, 32

               
               
               Conread position:1-834
               
               
               Cow position:chr5:15760741-15761648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:916
               
               
               Alignm identity:617
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 117

               
               
               Conread position:62-614
               
               
               Cow position:chr5:41547455-41548061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:395
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):13, 49

               
               
               Conread position:62-809
               
               
               Cow position:chr5:6124600-6125415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:822
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 45

               
               
               Conread position:62-825
               
               
               Cow position:chr5:28016616-28015780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:840
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 14

               
               
               Conread position:69-453
               
               
               Cow position:chr5:52040938-52041361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:303
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):30, 7

               
               
               Conread position:71-512
               
               
               Cow position:chr5:6670626-6671107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 20

               
               
               Conread position:73-382
               
               
               Cow position:chr5:31119645-31119985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 39

               
               
               Conread position:73-382
               
               
               Cow position:chr5:47704608-47704951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:73-396
               
               
               Cow position:chr5:46295145-46295494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):75, 35

               
               
               Conread position:73-433
               
               
               Cow position:chr5:16206615-16207015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:73-449
               
               
               Cow position:chr5:39936654-39936227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:297
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-453
               
               
               Cow position:chr5:29969160-29968731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:300
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):16, 29

               
               
               Conread position:73-467
               
               
               Cow position:chr5:14557903-14558349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:312
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):67, 28

               
               
               Conread position:73-476
               
               
               Cow position:chr5:50599598-50599159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 8

               
               
               Conread position:73-522
               
               
               Cow position:chr5:14551051-14551549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:341
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-528
               
               
               Cow position:chr5:1105333-1105827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:334
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:73-547
               
               
               Cow position:chr5:7175850-7175320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-548
               
               
               Cow position:chr5:26101271-26100755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:335
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:73-571
               
               
               Cow position:chr5:41586826-41586267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:373
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:73-580
               
               
               Cow position:chr5:57935575-57936138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 35

               
               
               Conread position:73-643
               
               
               Cow position:chr5:21188483-21187851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-682
               
               
               Cow position:chr5:45179297-45179968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:73-768
               
               
               Cow position:chr5:34300420-34299677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:753
               
               
               Alignm identity:540
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 42

               
               
               Conread position:73-797
               
               
               Cow position:chr5:50201461-50202238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:783
               
               
               Alignm identity:489
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):60, 31

               
               
               Conread position:73-810
               
               
               Cow position:chr5:5937851-5937036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:820
               
               
               Alignm identity:546
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 31

               
               
               Conread position:73-825
               
               
               Cow position:chr5:709600-710421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:824
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:73-825
               
               
               Cow position:chr5:53075318-53076138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:829
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr5:5106774-5105946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:832
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr5:6032522-6031706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:823
               
               
               Alignm identity:535
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 41

               
               
               Conread position:73-834
               
               
               Cow position:chr5:6773117-6772289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:832
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr5:12134145-12133323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:831
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:73-834
               
               
               Cow position:chr5:26467149-26466367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:809
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 29

               
               
               Conread position:73-834
               
               
               Cow position:chr5:41067551-41066746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:810
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 39

               
               
               Conread position:73-834
               
               
               Cow position:chr5:44708820-44709658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:845
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-834
               
               
               Cow position:chr5:54927374-54928198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:828
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 31

               
               
               Conread position:73-834
               
               
               Cow position:chr5:54929702-54930526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:828
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 31

               
               
               Conread position:73-834
               
               
               Cow position:chr5:64778454-64779286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:841
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 22

               
               
               Conread position:74-825
               
               
               Cow position:chr5:46780061-46779246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:819
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 33

               
               
               Conread position:75-828
               
               
               Cow position:chr5:67654838-67654055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:796
               
               
               Alignm identity:534
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 36

               
               
               Conread position:76-285
               
               
               Cow position:chr5:24643288-24643514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):55, 32

               
               
               Conread position:77-337
               
               
               Cow position:chr5:53855232-53854955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:77-834
               
               
               Cow position:chr5:8996477-8997301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:831
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 35

               
               
               Conread position:83-537
               
               
               Cow position:chr5:59782237-59782729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:332
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):59, 21

               
               
               Conread position:99-527
               
               
               Cow position:chr5:34528065-34527623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:299
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):49, 190

               
               
               Conread position:122-452
               
               
               Cow position:chr5:3204318-3203962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):17, 48

               
               
               Conread position:122-464
               
               
               Cow position:chr5:65600714-65600353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 222

               
               
               Conread position:122-711
               
               
               Cow position:chr5:18404581-18405207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 106

               
               
               Conread position:122-819
               
               
               Cow position:chr5:4388667-4387920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 26

               
               
               Conread position:122-834
               
               
               Cow position:chr5:52829298-52830059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:768
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 365

               
               
               Conread position:138-457
               
               
               Cow position:chr5:58145183-58145519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:139-449
               
               
               Cow position:chr5:5786859-5787203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):10, 71

               
               
               Conread position:139-465
               
               
               Cow position:chr5:39815841-39816189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:254
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):20, 130

               
               
               Conread position:139-824
               
               
               Cow position:chr5:23753902-23754613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:458
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:142-337
               
               
               Cow position:chr5:30276144-30275937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):9, 18

               
               
               Conread position:142-337
               
               
               Cow position:chr5:70593538-70593749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:142-803
               
               
               Cow position:chr5:56442722-56442030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 22

               
               
               Conread position:142-815
               
               
               Cow position:chr5:34669630-34670343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:142-831
               
               
               Cow position:chr5:49566028-49565302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:143-369
               
               
               Cow position:chr5:407905-407658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-376
               
               
               Cow position:chr5:28928324-28928576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr5:12325125-12325385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr5:27058175-27058435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr5:35497972-35497712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr5:40891029-40891280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr5:49103288-49103028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr5:54360657-54360917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr5:68273385-68273645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-387
               
               
               Cow position:chr5:19470792-19471064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-399
               
               
               Cow position:chr5:62171823-62171544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:143-410
               
               
               Cow position:chr5:31217552-31217263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):79, 9

               
               
               Conread position:143-410
               
               
               Cow position:chr5:36724276-36724554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):148, 18

               
               
               Conread position:143-418
               
               
               Cow position:chr5:19780570-19780871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-436
               
               
               Cow position:chr5:41980849-41980536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-452
               
               
               Cow position:chr5:53185040-53185379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:143-453
               
               
               Cow position:chr5:58900580-58900921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-458
               
               
               Cow position:chr5:66257087-66256751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-467
               
               
               Cow position:chr5:6060168-6060522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-520
               
               
               Cow position:chr5:28013321-28012911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-522
               
               
               Cow position:chr5:35207700-35207294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:281
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-522
               
               
               Cow position:chr5:54337363-54336954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:288
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:143-528
               
               
               Cow position:chr5:44276059-44275646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-530
               
               
               Cow position:chr5:39363336-39362915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:297
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-540
               
               
               Cow position:chr5:13807298-13807721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:295
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-540
               
               
               Cow position:chr5:16085366-16085779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:298
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):143, 13

               
               
               Conread position:143-556
               
               
               Cow position:chr5:15722860-15723302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:143-559
               
               
               Cow position:chr5:66338309-66337874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:143-580
               
               
               Cow position:chr5:26053195-26052715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:326
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-580
               
               
               Cow position:chr5:57335900-57336380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:325
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-598
               
               
               Cow position:chr5:34709233-34708731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:338
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-598
               
               
               Cow position:chr5:45705473-45704983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:337
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-609
               
               
               Cow position:chr5:72046208-72046712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 10

               
               
               Conread position:143-625
               
               
               Cow position:chr5:43991736-43991219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 13

               
               
               Conread position:143-635
               
               
               Cow position:chr5:27549050-27549566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:349
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-644
               
               
               Cow position:chr5:64061791-64061244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:362
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:143-692
               
               
               Cow position:chr5:1383437-1382843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-716
               
               
               Cow position:chr5:41410975-41411599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:413
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:143-725
               
               
               Cow position:chr5:42744249-42743644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-742
               
               
               Cow position:chr5:55631528-55630877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-787
               
               
               Cow position:chr5:34559601-34558914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-796
               
               
               Cow position:chr5:7140635-7141349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-813
               
               
               Cow position:chr5:5715625-5716311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-814
               
               
               Cow position:chr5:18118511-18119234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-825
               
               
               Cow position:chr5:4348551-4349264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-825
               
               
               Cow position:chr5:19978449-19979185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr5:29742094-29742826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 9

               
               
               Conread position:143-825
               
               
               Cow position:chr5:58770408-58771139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-829
               
               
               Cow position:chr5:3789687-3788955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-830
               
               
               Cow position:chr5:10542214-10542944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 20

               
               
               Conread position:143-831
               
               
               Cow position:chr5:14636115-14636854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr5:3970986-3970246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr5:5924519-5925238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr5:10922309-10921565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr5:23828734-23829448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-834
               
               
               Cow position:chr5:27179098-27178369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-834
               
               
               Cow position:chr5:29634893-29634150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr5:69520071-69519326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:543
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 20

               
               
               Conread position:144-282
               
               
               Cow position:chr5:15598799-15598944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:144-376
               
               
               Cow position:chr5:57986955-57986705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-387
               
               
               Cow position:chr5:72345379-72345643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-480
               
               
               Cow position:chr5:16100127-16100461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):200, 17

               
               
               Conread position:144-522
               
               
               Cow position:chr5:75754661-75755065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-528
               
               
               Cow position:chr5:40357506-40357899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:276
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-639
               
               
               Cow position:chr5:23647972-23648504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:354
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:144-794
               
               
               Cow position:chr5:70402320-70401646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:437
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-807
               
               
               Cow position:chr5:54623078-54622368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:144-833
               
               
               Cow position:chr5:6571792-6572506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 19

               
               
               Conread position:144-834
               
               
               Cow position:chr5:30582788-30582056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 12

               
               
               Conread position:144-834
               
               
               Cow position:chr5:41228586-41229321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:145-283
               
               
               Cow position:chr5:13718698-13718845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-293
               
               
               Cow position:chr5:70960709-70960866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 14

               
               
               Conread position:145-402
               
               
               Cow position:chr5:34637905-34637624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-410
               
               
               Cow position:chr5:7192882-7192599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-471
               
               
               Cow position:chr5:40827915-40828274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:261
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-522
               
               
               Cow position:chr5:43437481-43437890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:286
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-537
               
               
               Cow position:chr5:58245793-58245365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):6, 12

               
               
               Conread position:145-580
               
               
               Cow position:chr5:15677518-15677045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:322
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-729
               
               
               Cow position:chr5:34682901-34683534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-775
               
               
               Cow position:chr5:25913180-25912512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-831
               
               
               Cow position:chr5:13259036-13258326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:528
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-834
               
               
               Cow position:chr5:4015410-4016146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr5:18250509-18249780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:145-834
               
               
               Cow position:chr5:31917063-31916369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 55

               
               
               Conread position:145-834
               
               
               Cow position:chr5:32964598-32965341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:753
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:146-304
               
               
               Cow position:chr5:69337231-69337060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):5, 13

               
               
               Conread position:146-382
               
               
               Cow position:chr5:51309406-51309156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):13, 167

               
               
               Conread position:146-409
               
               
               Cow position:chr5:25495954-25496237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):5, 13

               
               
               Conread position:146-792
               
               
               Cow position:chr5:14904626-14905288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 132

               
               
               Conread position:146-826
               
               
               Cow position:chr5:73485425-73486168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 585

               
               
               Conread position:146-834
               
               
               Cow position:chr5:18557957-18558681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 14

               
               
               Conread position:146-834
               
               
               Cow position:chr5:54785646-54786386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 132

               
               
               Conread position:147-337
               
               
               Cow position:chr5:35762741-35762543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):83, 16

               
               
               Conread position:147-337
               
               
               Cow position:chr5:37758379-37758587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-375
               
               
               Cow position:chr5:14141102-14140853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-380
               
               
               Cow position:chr5:40712018-40712267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:147-409
               
               
               Cow position:chr5:36406608-36406327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):14, 71

               
               
               Conread position:147-467
               
               
               Cow position:chr5:43984545-43984193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:147-471
               
               
               Cow position:chr5:72007438-72007788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):16, 40

               
               
               Conread position:147-480
               
               
               Cow position:chr5:39448091-39448449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:260
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):12, 129

               
               
               Conread position:147-508
               
               
               Cow position:chr5:279718-280113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):12, 287

               
               
               Conread position:147-529
               
               
               Cow position:chr5:46797360-46796952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:275
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):12, 293

               
               
               Conread position:147-540
               
               
               Cow position:chr5:21524510-21524083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:292
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):12, 207

               
               
               Conread position:147-544
               
               
               Cow position:chr5:48408996-48409417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:147-601
               
               
               Cow position:chr5:76098569-76099066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:331
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):72, 474

               
               
               Conread position:147-621
               
               
               Cow position:chr5:6576128-6576653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:353
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):12, 17

               
               
               Conread position:147-633
               
               
               Cow position:chr5:26096733-26096212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:358
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):12, 29

               
               
               Conread position:147-747
               
               
               Cow position:chr5:46677072-46676421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 52

               
               
               Conread position:147-759
               
               
               Cow position:chr5:3544757-3544104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 29

               
               
               Conread position:147-809
               
               
               Cow position:chr5:9234952-9235657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:459
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):12, 50

               
               
               Conread position:147-815
               
               
               Cow position:chr5:49754865-49755585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:467
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):12, 34

               
               
               Conread position:147-825
               
               
               Cow position:chr5:22857172-22857896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:477
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):51, 286

               
               
               Conread position:147-825
               
               
               Cow position:chr5:34192382-34191653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 295

               
               
               Conread position:147-825
               
               
               Cow position:chr5:62159460-62160187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 217

               
               
               Conread position:147-826
               
               
               Cow position:chr5:24299475-24298743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 599

               
               
               Conread position:147-834
               
               
               Cow position:chr5:1338462-1339201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 103

               
               
               Conread position:147-834
               
               
               Cow position:chr5:3500670-3501406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 29

               
               
               Conread position:147-834
               
               
               Cow position:chr5:6151370-6152111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 609

               
               
               Conread position:147-834
               
               
               Cow position:chr5:21189679-21188943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 569

               
               
               Conread position:147-834
               
               
               Cow position:chr5:24102112-24101371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 609

               
               
               Conread position:147-834
               
               
               Cow position:chr5:48805008-48805729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 185

               
               
               Conread position:147-834
               
               
               Cow position:chr5:62436581-62435847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 199

               
               
               Conread position:148-378
               
               
               Cow position:chr5:54714306-54714558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:148-411
               
               
               Cow position:chr5:52645882-52646170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-452
               
               
               Cow position:chr5:7042690-7042366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):11, 76

               
               
               Conread position:148-528
               
               
               Cow position:chr5:29559049-29558642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:290
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):11, 40

               
               
               Conread position:148-547
               
               
               Cow position:chr5:24221448-24221020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 40

               
               
               Conread position:148-594
               
               
               Cow position:chr5:32697347-32697828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 116

               
               
               Conread position:148-825
               
               
               Cow position:chr5:47560099-47560831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 609

               
               
               Conread position:148-834
               
               
               Cow position:chr5:10853373-10854106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 590

               
               
               Conread position:149-548
               
               
               Cow position:chr5:15855778-15856206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:286
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):65, 278

               
               
               Conread position:149-834
               
               
               Cow position:chr5:62377814-62377112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 10

               
               
               Conread position:150-473
               
               
               Cow position:chr5:10255011-10254670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):72, 8

               
               
               Conread position:150-824
               
               
               Cow position:chr5:6190305-6189629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 10

               
               
               Conread position:150-834
               
               
               Cow position:chr5:25928246-25928976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 242

               
               
               Conread position:152-834
               
               
               Cow position:chr5:72857330-72856595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 7

               
               
               Conread position:153-465
               
               
               Cow position:chr5:17425693-17426038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):6, 231

               
               
               Conread position:153-685
               
               
               Cow position:chr5:25920340-25920904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 98

               
               
               Conread position:153-834
               
               
               Cow position:chr5:54722105-54721375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:539
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 265

               
               
               Conread position:154-640
               
               
               Cow position:chr5:7553213-7552705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 88

               
               
               Conread position:156-410
               
               
               Cow position:chr5:411267-411548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:158-358
               
               
               Cow position:chr5:694002-693785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):65, 127

               
               
               Conread position:158-376
               
               
               Cow position:chr5:47565335-47565575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:158-380
               
               
               Cow position:chr5:56931441-56931680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):64, 220

               
               
               Conread position:158-382
               
               
               Cow position:chr5:4041587-4041342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):64, 242

               
               
               Conread position:158-382
               
               
               Cow position:chr5:10514569-10514324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr5:31285307-31285061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr5:38663171-38662929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr5:39216705-39216459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr5:43350244-43349998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-383
               
               
               Cow position:chr5:40864379-40864626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-403
               
               
               Cow position:chr5:31145348-31145612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-410
               
               
               Cow position:chr5:47601213-47600939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):64, 117

               
               
               Conread position:158-433
               
               
               Cow position:chr5:47564867-47565163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):61, 242

               
               
               Conread position:158-452
               
               
               Cow position:chr5:14630486-14630806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):66, 163

               
               
               Conread position:158-453
               
               
               Cow position:chr5:59147057-59146731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-520
               
               
               Cow position:chr5:15362487-15362098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 144

               
               
               Conread position:158-528
               
               
               Cow position:chr5:1395010-1395415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):64, 383

               
               
               Conread position:158-528
               
               
               Cow position:chr5:68593870-68593480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:283
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):67, 224

               
               
               Conread position:158-537
               
               
               Cow position:chr5:4683051-4683464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:284
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-537
               
               
               Cow position:chr5:40928576-40928987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):40, 305

               
               
               Conread position:158-551
               
               
               Cow position:chr5:6694984-6694553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:291
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-573
               
               
               Cow position:chr5:25926987-25927448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:316
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr5:4753684-4754149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:319
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):64, 30

               
               
               Conread position:158-583
               
               
               Cow position:chr5:55722979-55722510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-685
               
               
               Cow position:chr5:36369542-36370123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-692
               
               
               Cow position:chr5:10772380-10772963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 342

               
               
               Conread position:158-707
               
               
               Cow position:chr5:54951667-54952274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-712
               
               
               Cow position:chr5:51502324-51501732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 132

               
               
               Conread position:158-721
               
               
               Cow position:chr5:18491862-18491240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 329

               
               
               Conread position:158-725
               
               
               Cow position:chr5:27907018-27907636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 285

               
               
               Conread position:158-750
               
               
               Cow position:chr5:20107582-20108222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 21

               
               
               Conread position:158-752
               
               
               Cow position:chr5:1059117-1059764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 589

               
               
               Conread position:158-804
               
               
               Cow position:chr5:31709741-31709051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 85

               
               
               Conread position:158-812
               
               
               Cow position:chr5:46625826-46626528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 54

               
               
               Conread position:158-813
               
               
               Cow position:chr5:31634876-31634163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 572

               
               
               Conread position:158-815
               
               
               Cow position:chr5:29255764-29256471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 382

               
               
               Conread position:158-825
               
               
               Cow position:chr5:4962937-4963648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 428

               
               
               Conread position:158-825
               
               
               Cow position:chr5:52822759-52823476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 33

               
               
               Conread position:158-829
               
               
               Cow position:chr5:18901763-18901062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 220

               
               
               Conread position:158-833
               
               
               Cow position:chr5:46667521-46666796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 27

               
               
               Conread position:158-834
               
               
               Cow position:chr5:442859-443588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr5:445929-445239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 396

               
               
               Conread position:158-834
               
               
               Cow position:chr5:2977237-2976507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 267

               
               
               Conread position:158-834
               
               
               Cow position:chr5:6455213-6455942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr5:11631535-11632264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 275

               
               
               Conread position:158-834
               
               
               Cow position:chr5:37380536-37379810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 368

               
               
               Conread position:158-834
               
               
               Cow position:chr5:42283613-42282892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 247

               
               
               Conread position:158-834
               
               
               Cow position:chr5:48026718-48025991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 388

               
               
               Conread position:158-834
               
               
               Cow position:chr5:49221048-49221771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 278

               
               
               Conread position:158-834
               
               
               Cow position:chr5:51165859-51166586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 594

               
               
               Conread position:158-834
               
               
               Cow position:chr5:51746668-51745944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 339

               
               
               Conread position:158-834
               
               
               Cow position:chr5:58004671-58003959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 294

               
               
               Conread position:158-834
               
               
               Cow position:chr5:58192365-58191638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 587

               
               
               Conread position:158-834
               
               
               Cow position:chr5:59064893-59064166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 269

               
               
               Conread position:158-835
               
               
               Cow position:chr5:46816653-46817382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 596

               
               
               Conread position:159-379
               
               
               Cow position:chr5:53866481-53866239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:159-815
               
               
               Cow position:chr5:70348857-70348146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:451
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):71, 155

               
               
               Conread position:159-834
               
               
               Cow position:chr5:10840027-10840748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 581

               
               
               Conread position:159-834
               
               
               Cow position:chr5:37626295-37625582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 153

               
               
               Conread position:160-387
               
               
               Cow position:chr5:27656302-27656058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-410
               
               
               Cow position:chr5:40346660-40346931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):62, 20

               
               
               Conread position:160-457
               
               
               Cow position:chr5:50728751-50728429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):63, 222

               
               
               Conread position:160-518
               
               
               Cow position:chr5:7498537-7498929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-541
               
               
               Cow position:chr5:42044286-42043874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):62, 264

               
               
               Conread position:160-558
               
               
               Cow position:chr5:29122584-29122996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:281
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):65, 233

               
               
               Conread position:160-588
               
               
               Cow position:chr5:18702991-18703448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 332

               
               
               Conread position:160-644
               
               
               Cow position:chr5:47343322-47342790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-741
               
               
               Cow position:chr5:5682057-5682697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 595

               
               
               Conread position:160-778
               
               
               Cow position:chr5:27174150-27173500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:430
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):60, 101

               
               
               Conread position:160-807
               
               
               Cow position:chr5:3695779-3695112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 41

               
               
               Conread position:160-815
               
               
               Cow position:chr5:21184886-21185589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:445
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):63, 328

               
               
               Conread position:160-819
               
               
               Cow position:chr5:2917903-2917200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 38

               
               
               Conread position:160-819
               
               
               Cow position:chr5:49116903-49117615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 596

               
               
               Conread position:160-825
               
               
               Cow position:chr5:59771495-59770777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 27

               
               
               Conread position:160-834
               
               
               Cow position:chr5:32164490-32165196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 249

               
               
               Conread position:160-834
               
               
               Cow position:chr5:41392170-41391451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:160-834
               
               
               Cow position:chr5:46672055-46671336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 28

               
               
               Conread position:161-509
               
               
               Cow position:chr5:45941549-45941926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):56, 124

               
               
               Conread position:161-520
               
               
               Cow position:chr5:24087603-24087997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:268
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:161-552
               
               
               Cow position:chr5:54693669-54694088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 155

               
               
               Conread position:161-594
               
               
               Cow position:chr5:32088333-32088803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:305
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):61, 344

               
               
               Conread position:161-623
               
               
               Cow position:chr5:31560688-31560182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:336
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):58, 80

               
               
               Conread position:161-752
               
               
               Cow position:chr5:46470311-46470939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:397
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):57, 273

               
               
               Conread position:161-755
               
               
               Cow position:chr5:41020426-41021031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:375
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):52, 129

               
               
               Conread position:161-772
               
               
               Cow position:chr5:41953862-41954502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:419
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):69, 8

               
               
               Conread position:161-833
               
               
               Cow position:chr5:26058564-26057851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:452
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):61, 101

               
               
               Conread position:161-834
               
               
               Cow position:chr5:59691-60424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:480
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 20

               
               
               Conread position:161-834
               
               
               Cow position:chr5:49522148-49521432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 349

               
               
               Conread position:161-837
               
               
               Cow position:chr5:63312072-63312799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 282

               
               
               Conread position:162-751
               
               
               Cow position:chr5:24577883-24577240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 586

               
               
               Conread position:162-769
               
               
               Cow position:chr5:17027511-17026864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 274

               
               
               Conread position:162-815
               
               
               Cow position:chr5:2959709-2959015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:435
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):54, 123

               
               
               Conread position:163-562
               
               
               Cow position:chr5:4166069-4165633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:163-644
               
               
               Cow position:chr5:57125449-57124936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:327
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):59, 387

               
               
               Conread position:163-796
               
               
               Cow position:chr5:16909471-16910121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:421
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):57, 38

               
               
               Conread position:163-829
               
               
               Cow position:chr5:32755006-32755716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 322

               
               
               Conread position:163-834
               
               
               Cow position:chr5:295706-294986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 586

               
               
               Conread position:164-382
               
               
               Cow position:chr5:11780440-11780677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:164-743
               
               
               Cow position:chr5:10261824-10262470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:426
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):59, 600

               
               
               Conread position:164-773
               
               
               Cow position:chr5:27491415-27490759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:426
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:164-797
               
               
               Cow position:chr5:33775342-33776009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 10

               
               
               Conread position:167-825
               
               
               Cow position:chr5:23354185-23353485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:458
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):54, 583

               
               
               Conread position:169-479
               
               
               Cow position:chr5:3551273-3551607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:169-825
               
               
               Cow position:chr5:68337083-68337766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 134

               
               
               Conread position:170-387
               
               
               Cow position:chr5:54454925-54454694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:170-453
               
               
               Cow position:chr5:2394870-2395185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:170-834
               
               
               Cow position:chr5:9002679-9003389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 43

               
               
               Conread position:171-645
               
               
               Cow position:chr5:19969613-19970117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:173-681
               
               
               Cow position:chr5:44617580-44617018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:176-410
               
               
               Cow position:chr5:54868649-54868387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:177-646
               
               
               Cow position:chr5:41548121-41548620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 195

               
               
               Conread position:178-834
               
               
               Cow position:chr5:42676665-42676008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 109

               
               
               Conread position:180-825
               
               
               Cow position:chr5:14542889-14543570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 522

               
               
               Conread position:183-453
               
               
               Cow position:chr5:67814287-67813985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:183-635
               
               
               Cow position:chr5:30302257-30301783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 112

               
               
               Conread position:183-679
               
               
               Cow position:chr5:27007069-27006557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:346
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):42, 145

               
               
               Conread position:186-623
               
               
               Cow position:chr5:8178556-8178076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:321
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):37, 348

               
               
               Conread position:187-518
               
               
               Cow position:chr5:58353611-58353274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 15

               
               
               Conread position:187-825
               
               
               Cow position:chr5:10066129-10066820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 566

               
               
               Conread position:187-834
               
               
               Cow position:chr5:58199430-58198731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 565

               
               
               Conread position:188-834
               
               
               Cow position:chr5:46685217-46685889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 147

               
               
               Conread position:189-825
               
               
               Cow position:chr5:51684201-51684904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 578

               
               
               Conread position:189-834
               
               
               Cow position:chr5:40896931-40897610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:456
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):27, 302

               
               
               Conread position:189-834
               
               
               Cow position:chr5:46734860-46735555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 553

               
               
               Conread position:190-825
               
               
               Cow position:chr5:12921814-12921129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 87

               
               
               Conread position:190-834
               
               
               Cow position:chr5:18667725-18667028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 563

               
               
               Conread position:191-459
               
               
               Cow position:chr5:1780173-1780461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 260

               
               
               Conread position:191-834
               
               
               Cow position:chr5:7396660-7395971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 248

               
               
               Conread position:198-695
               
               
               Cow position:chr5:29763317-29762783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:363
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):25, 299

               
               
               Conread position:201-548
               
               
               Cow position:chr5:40270443-40270817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:253
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):22, 299

               
               
               Conread position:201-683
               
               
               Cow position:chr5:50900031-50899522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:333
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):22, 112

               
               
               Conread position:201-825
               
               
               Cow position:chr5:37735782-37735105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 517

               
               
               Conread position:208-527
               
               
               Cow position:chr5:28026774-28026445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:208-782
               
               
               Cow position:chr5:54136245-54136865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 538

               
               
               Conread position:208-834
               
               
               Cow position:chr5:4434112-4434783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 537

               
               
               Conread position:218-806
               
               
               Cow position:chr5:35446257-35446867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 35

               
               
               Conread position:218-825
               
               
               Cow position:chr5:34523865-34524517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:219-825
               
               
               Cow position:chr5:6585076-6585730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 15

               
               
               Conread position:221-539
               
               
               Cow position:chr5:58461317-58461666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:221-540
               
               
               Cow position:chr5:41603655-41603311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:221-580
               
               
               Cow position:chr5:12212913-12212517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:221-580
               
               
               Cow position:chr5:12337652-12337258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:221-707
               
               
               Cow position:chr5:41489048-41488518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:349
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):19, 517

               
               
               Conread position:221-825
               
               
               Cow position:chr5:48225205-48225842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 148

               
               
               Conread position:221-834
               
               
               Cow position:chr5:54125445-54124813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 10

               
               
               Conread position:223-745
               
               
               Cow position:chr5:15455128-15454589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:365
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 67

               
               
               Conread position:223-831
               
               
               Cow position:chr5:64844890-64845537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 34

               
               
               Conread position:225-631
               
               
               Cow position:chr5:32810657-32811098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:305
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):61, 121

               
               
               Conread position:229-680
               
               
               Cow position:chr5:47855195-47854709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 337

               
               
               Conread position:235-834
               
               
               Cow position:chr5:30294660-30294040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 173

               
               
               Conread position:241-540
               
               
               Cow position:chr5:38738373-38738058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):51, 94

               
               
               Conread position:241-685
               
               
               Cow position:chr5:71456692-71457176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:243-480
               
               
               Cow position:chr5:50923491-50923748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:243-807
               
               
               Cow position:chr5:28331273-28331869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:376
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):44, 224

               
               
               Conread position:245-818
               
               
               Cow position:chr5:48535190-48534593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 100

               
               
               Conread position:247-834
               
               
               Cow position:chr5:59146720-59146096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 488

               
               
               Conread position:247-849
               
               
               Cow position:chr5:58012465-58013096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:405
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):92, 13

               
               
               Conread position:248-528
               
               
               Cow position:chr5:16894806-16895101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):40, 171

               
               
               Conread position:260-717
               
               
               Cow position:chr5:47871781-47872268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 33

               
               
               Conread position:264-713
               
               
               Cow position:chr5:21828148-21827669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 162

               
               
               Conread position:270-825
               
               
               Cow position:chr5:49132512-49131924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:382
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):19, 78

               
               
               Conread position:271-819
               
               
               Cow position:chr5:24643553-24644132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 15

               
               
               Conread position:273-725
               
               
               Cow position:chr5:4630078-4629600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:317
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):16, 292

               
               
               Conread position:276-811
               
               
               Cow position:chr5:6735344-6735881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):371, 429

               
               
               Conread position:281-589
               
               
               Cow position:chr5:46707946-46707614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):58, 244

               
               
               Conread position:281-831
               
               
               Cow position:chr5:48574518-48575090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 166

               
               
               Conread position:288-829
               
               
               Cow position:chr5:53834954-53834380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 411

               
               
               Conread position:290-769
               
               
               Cow position:chr5:17645782-17646295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 307

               
               
               Conread position:290-815
               
               
               Cow position:chr5:57363498-57364041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:340
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 183

               
               
               Conread position:290-825
               
               
               Cow position:chr5:47471696-47471111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:390
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):49, 201

               
               
               Conread position:290-828
               
               
               Cow position:chr5:52605324-52605896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 439

               
               
               Conread position:290-832
               
               
               Cow position:chr5:40792132-40791564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 64

               
               
               Conread position:291-645
               
               
               Cow position:chr5:29222966-29223344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):48, 303

               
               
               Conread position:292-523
               
               
               Cow position:chr5:55088152-55087904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):47, 129

               
               
               Conread position:292-815
               
               
               Cow position:chr5:45284323-45284867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:353
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):53, 19

               
               
               Conread position:294-834
               
               
               Cow position:chr5:73444695-73444124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 27

               
               
               Conread position:305-692
               
               
               Cow position:chr5:36906777-36907200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:311-551
               
               
               Cow position:chr5:6044277-6044020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):25, 156

               
               
               Conread position:311-740
               
               
               Cow position:chr5:26134989-26135458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:322
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):28, 395

               
               
               Conread position:311-819
               
               
               Cow position:chr5:24632760-24633303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 424

               
               
               Conread position:315-551
               
               
               Cow position:chr5:33536886-33536636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:196
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):20, 53

               
               
               Conread position:315-579
               
               
               Cow position:chr5:28947136-28947419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):26, 147

               
               
               Conread position:315-795
               
               
               Cow position:chr5:29459167-29458683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 27

               
               
               Conread position:320-771
               
               
               Cow position:chr5:71738381-71737898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 198

               
               
               Conread position:322-825
               
               
               Cow position:chr5:9091158-9091688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 43

               
               
               Conread position:335-883
               
               
               Cow position:chr5:29769311-29768728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:363
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 397

               
               
               Conread position:336-645
               
               
               Cow position:chr5:24159185-24158850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:341-834
               
               
               Cow position:chr5:47361447-47360940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:340
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):33, 77

               
               
               Conread position:345-767
               
               
               Cow position:chr5:41356602-41357049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:304
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):44, 67

               
               
               Conread position:348-782
               
               
               Cow position:chr5:38848347-38848812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 383

               
               
               Conread position:350-804
               
               
               Cow position:chr5:8479513-8479042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:314
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):39, 10

               
               
               Conread position:350-811
               
               
               Cow position:chr5:1230037-1229550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:322
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):14, 30

               
               
               Conread position:362-834
               
               
               Cow position:chr5:2203167-2203670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 369

               
               
               Conread position:362-834
               
               
               Cow position:chr5:25901255-25901745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 330

               
               
               Conread position:373-833
               
               
               Cow position:chr5:57983647-57984119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 12

               
               
               Conread position:380-834
               
               
               Cow position:chr5:47697005-47697473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 218

               
               
               Conread position:402-835
               
               
               Cow position:chr5:6986311-6986765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 43

               
               
               Conread position:413-718
               
               
               Cow position:chr5:69771227-69770918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 138

               
               
               Conread position:414-834
               
               
               Cow position:chr5:10299631-10299189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 308

               
               
               Conread position:414-834
               
               
               Cow position:chr5:31120043-31120485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 104

               
               
               Conread position:415-829
               
               
               Cow position:chr5:12728997-12729410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 143

               
               
               Conread position:419-788
               
               
               Cow position:chr5:23233640-23233260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):55, 140

               
               
               Conread position:421-725
               
               
               Cow position:chr5:2695646-2695972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 295

               
               
               Conread position:421-729
               
               
               Cow position:chr5:13630338-13630668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 50

               
               
               Conread position:421-801
               
               
               Cow position:chr5:50604198-50604589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):8, 294

               
               
               Conread position:421-819
               
               
               Cow position:chr5:11358282-11357862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-825
               
               
               Cow position:chr5:26624674-26625085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 34

               
               
               Conread position:421-834
               
               
               Cow position:chr5:30157516-30157081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr5:38662488-38662053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 299

               
               
               Conread position:421-834
               
               
               Cow position:chr5:66910260-66909825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:422-746
               
               
               Cow position:chr5:62758984-62759328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 33

               
               
               Conread position:422-815
               
               
               Cow position:chr5:42745920-42745517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 76

               
               
               Conread position:422-834
               
               
               Cow position:chr5:39245143-39245565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:293
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):8, 85

               
               
               Conread position:422-834
               
               
               Cow position:chr5:56931694-56932095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:256
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):103, 135

               
               
               Conread position:427-720
               
               
               Cow position:chr5:39216088-39216402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):41, 288

               
               
               Conread position:427-834
               
               
               Cow position:chr5:31098098-31098531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:299
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:434-757
               
               
               Cow position:chr5:28571690-28571346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):31, 71

               
               
               Conread position:435-693
               
               
               Cow position:chr5:52646422-52646691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):92, 35

               
               
               Conread position:439-807
               
               
               Cow position:chr5:14631127-14631514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 18

               
               
               Conread position:440-819
               
               
               Cow position:chr5:27655879-27655485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 68

               
               
               Conread position:440-824
               
               
               Cow position:chr5:16127180-16126777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):45, 279

               
               
               Conread position:454-834
               
               
               Cow position:chr5:26076092-26076480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:240
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):61, 81

               
               
               Conread position:491-806
               
               
               Cow position:chr5:57921001-57920670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:235
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):34, 194

               
               
               Conread position:491-822
               
               
               Cow position:chr5:45180004-45180355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 229

               
               
               Conread position:491-824
               
               
               Cow position:chr5:3441401-3441066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 219

               
               
               Conread position:491-825
               
               
               Cow position:chr5:37609858-37610211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 229

               
               
               Conread position:491-829
               
               
               Cow position:chr5:23957243-23957599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr5:6615210-6615571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 217

               
               
               Conread position:491-834
               
               
               Cow position:chr5:50675504-50675866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr5:54362381-54362019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:492-834
               
               
               Cow position:chr5:30844903-30844550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:495-823
               
               
               Cow position:chr5:37424806-37424458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):29, 211

               
               
               Conread position:505-825
               
               
               Cow position:chr5:7276890-7276564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:505-834
               
               
               Cow position:chr5:42507816-42507481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:506-804
               
               
               Cow position:chr5:2699116-2699422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:508-834
               
               
               Cow position:chr5:38378716-38379049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 47

               
               
               Conread position:514-825
               
               
               Cow position:chr5:61231765-61232079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:518-835
               
               
               Cow position:chr5:57336368-57336693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:522-833
               
               
               Cow position:chr5:3627767-3628089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 113

               
               
               Conread position:530-825
               
               
               Cow position:chr5:44482637-44482335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:537-782
               
               
               Cow position:chr5:15723301-15723551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:192
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):35, 67

               
               
               Conread position:537-834
               
               
               Cow position:chr5:25232121-25232420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):9, 166

               
               
               Conread position:538-785
               
               
               Cow position:chr5:39936113-39935859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):8, 169

               
               
               Conread position:545-834
               
               
               Cow position:chr5:6840202-6840500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):28, 164

               
               
               Conread position:545-834
               
               
               Cow position:chr5:49970858-49970560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):28, 166

               
               
               Conread position:551-815
               
               
               Cow position:chr5:15316741-15316469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):21, 37

               
               
               Conread position:561-834
               
               
               Cow position:chr5:58243797-58244074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):76, 146

               
               
               Conread position:568-834
               
               
               Cow position:chr5:32088802-32089072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):78, 134

               
               
               Conread position:569-802
               
               
               Cow position:chr5:24220135-24219898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):77, 40

               
               
               Conread position:569-823
               
               
               Cow position:chr5:60445944-60446203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):78, 133

               
               
               Conread position:569-825
               
               
               Cow position:chr5:32954318-32954057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):66, 130

               
               
               Conread position:569-825
               
               
               Cow position:chr5:34526389-34526133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):77, 134

               
               
               Conread position:569-834
               
               
               Cow position:chr5:14655165-14655438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):78, 134

               
               
               Conread position:569-834
               
               
               Cow position:chr5:41952083-41952353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):78, 133

               
               
               Conread position:570-834
               
               
               Cow position:chr5:10814197-10813929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):77, 48

               
               
               Conread position:573-834
               
               
               Cow position:chr5:31751329-31751076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 47

               
               
               Conread position:579-785
               
               
               Cow position:chr5:41524303-41524511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):67, 30

               
               
               Conread position:579-833
               
               
               Cow position:chr5:48409479-48409738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:581-834
               
               
               Cow position:chr5:15676894-15676637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:582-819
               
               
               Cow position:chr5:8178086-8177845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):66, 123

               
               
               Conread position:582-831
               
               
               Cow position:chr5:46796666-46796410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):55, 6

               
               
               Conread position:585-833
               
               
               Cow position:chr5:54694830-54695079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):61, 8

               
               
               Conread position:588-834
               
               
               Cow position:chr5:43990031-43989791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):37, 115

               
               
               Conread position:591-833
               
               
               Cow position:chr5:39448466-39448710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:591-834
               
               
               Cow position:chr5:412741-412988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):57, 17

               
               
               Conread position:591-834
               
               
               Cow position:chr5:1640822-1641070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:188
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-834
               
               
               Cow position:chr5:5859935-5859680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):55, 80

               
               
               Conread position:591-834
               
               
               Cow position:chr5:58149654-58149893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 41

               
               
               Conread position:592-825
               
               
               Cow position:chr5:18704627-18704390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):34, 16

               
               
               Conread position:592-834
               
               
               Cow position:chr5:12679614-12679859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):54, 110

               
               
               Conread position:592-834
               
               
               Cow position:chr5:18119510-18119757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):55, 113

               
               
               Conread position:593-834
               
               
               Cow position:chr5:4754761-4755006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):54, 110

               
               
               Conread position:593-888
               
               
               Cow position:chr5:59279106-59278810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):53, 5

               
               
               Conread position:600-824
               
               
               Cow position:chr5:41980428-41980205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):48, 63

               
               
               Conread position:601-834
               
               
               Cow position:chr5:21521773-21522011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):46, 70

               
               
               Conread position:601-834
               
               
               Cow position:chr5:34218611-34218838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):50, 13

               
               
               Conread position:604-831
               
               
               Cow position:chr5:59083279-59083505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):50, 61

               
               
               Conread position:609-797
               
               
               Cow position:chr5:58462687-58462494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:609-825
               
               
               Cow position:chr5:37083922-37084143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:609-834
               
               
               Cow position:chr5:27196128-27196358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:610-831
               
               
               Cow position:chr5:28947789-28948016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:610-846
               
               
               Cow position:chr5:45703010-45702769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):27, 61

               
               
               Conread position:620-825
               
               
               Cow position:chr5:46002708-46002919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):26, 83

               
               
               Conread position:620-834
               
               
               Cow position:chr5:57614251-57614470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):26, 83

               
               
               Conread position:628-834
               
               
               Cow position:chr5:15362095-15361886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 72

               
               
               Conread position:645-831
               
               
               Cow position:chr5:28026364-28026180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):169, 12

               
               
               Conread position:645-834
               
               
               Cow position:chr5:11153550-11153737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:645-834
               
               
               Cow position:chr5:29827277-29827089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:648-834
               
               
               Cow position:chr5:3201258-3201073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 26

               
               
               Conread position:653-834
               
               
               Cow position:chr5:29432692-29432867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:657-834
               
               
               Cow position:chr5:28222324-28222503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 56

               
               
               Conread position:666-815
               
               
               Cow position:chr5:23684495-23684642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:668-825
               
               
               Cow position:chr5:38286171-38286015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:668-828
               
               
               Cow position:chr5:32141395-32141552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:668-834
               
               
               Cow position:chr5:41293691-41293531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:671-806
               
               
               Cow position:chr5:68591704-68591571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):96, 26

               
               
               Conread position:671-825
               
               
               Cow position:chr5:73220299-73220452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:671-834
               
               
               Cow position:chr5:34472293-34472453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):121, 20

               
               
               Conread position:671-834
               
               
               Cow position:chr5:73458053-73457894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:678-834
               
               
               Cow position:chr5:50688688-50688534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:679-834
               
               
               Cow position:chr5:13807803-13807952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:679-834
               
               
               Cow position:chr5:35206901-35207054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:681-825
               
               
               Cow position:chr5:54454309-54454165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 15

               
               
               Conread position:683-834
               
               
               Cow position:chr5:58000553-58000409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:689-834
               
               
               Cow position:chr5:40347415-40347559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr5:1382727-1382591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr5:10513416-10513552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:705-834
               
               
               Cow position:chr5:31284946-31284817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:724-834
               
               
               Cow position:chr5:74036349-74036239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-337
               
               
               Cow position:chr6:24125631-24126012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):54, 119

               
               
               Conread position:1-375
               
               
               Cow position:chr6:32125708-32125295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:283
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):87, 57

               
               
               Conread position:1-834
               
               
               Cow position:chr6:11192809-11193730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:926
               
               
               Alignm identity:629
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 118

               
               
               Conread position:62-453
               
               
               Cow position:chr6:63714575-63715014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:301
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):66, 11

               
               
               Conread position:63-644
               
               
               Cow position:chr6:39137192-39136557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 41

               
               
               Conread position:69-645
               
               
               Cow position:chr6:10695405-10694767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 24

               
               
               Conread position:70-223
               
               
               Cow position:chr6:33509129-33508980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:70-540
               
               
               Cow position:chr6:17344889-17344369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 42

               
               
               Conread position:71-551
               
               
               Cow position:chr6:22225308-22225815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:350
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):78, 36

               
               
               Conread position:71-743
               
               
               Cow position:chr6:29084707-29085424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:463
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:73-382
               
               
               Cow position:chr6:10536288-10536636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:240
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:73-399
               
               
               Cow position:chr6:65930911-65930547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):71, 37

               
               
               Conread position:73-453
               
               
               Cow position:chr6:48872665-48873062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:73-466
               
               
               Cow position:chr6:63040644-63041080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:73-522
               
               
               Cow position:chr6:1274167-1274654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:331
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):71, 34

               
               
               Conread position:73-528
               
               
               Cow position:chr6:20581088-20581592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:339
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-580
               
               
               Cow position:chr6:4468305-4467760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:383
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:73-580
               
               
               Cow position:chr6:8753767-8754331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-580
               
               
               Cow position:chr6:11402011-11401443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:385
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:73-631
               
               
               Cow position:chr6:16645562-16644964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:386
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):62, 34

               
               
               Conread position:73-644
               
               
               Cow position:chr6:16410745-16410115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-692
               
               
               Cow position:chr6:23567917-23568592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:438
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):97, 34

               
               
               Conread position:73-693
               
               
               Cow position:chr6:12927259-12926573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:73-705
               
               
               Cow position:chr6:59507882-59507228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:409
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):25, 117

               
               
               Conread position:73-766
               
               
               Cow position:chr6:34030944-34030215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 36

               
               
               Conread position:73-767
               
               
               Cow position:chr6:2089949-2089210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-794
               
               
               Cow position:chr6:4389403-4388640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 34

               
               
               Conread position:73-796
               
               
               Cow position:chr6:20451647-20450858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:797
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:73-825
               
               
               Cow position:chr6:27173532-27172699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:836
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:73-830
               
               
               Cow position:chr6:33466646-33465825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:829
               
               
               Alignm identity:555
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 31

               
               
               Conread position:73-834
               
               
               Cow position:chr6:126444-127272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:834
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr6:6119314-6120119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:823
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr6:16418000-16418825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:830
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr6:39998790-39999597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:817
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 35

               
               
               Conread position:73-834
               
               
               Cow position:chr6:55593755-55592916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:843
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 34

               
               
               Conread position:73-887
               
               
               Cow position:chr6:9235203-9234316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:892
               
               
               Alignm identity:604
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:74-394
               
               
               Cow position:chr6:47988601-47988256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):75, 35

               
               
               Conread position:74-441
               
               
               Cow position:chr6:539825-539411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:74-480
               
               
               Cow position:chr6:50527192-50526745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:307
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):75, 33

               
               
               Conread position:74-551
               
               
               Cow position:chr6:6613981-6613474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:345
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:74-834
               
               
               Cow position:chr6:41232154-41231347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:812
               
               
               Alignm identity:546
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 17

               
               
               Conread position:75-223
               
               
               Cow position:chr6:47339824-47339973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):74, 29

               
               
               Conread position:75-337
               
               
               Cow position:chr6:41193036-41192739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):18, 37

               
               
               Conread position:75-441
               
               
               Cow position:chr6:45065492-45065880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:269
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):74, 34

               
               
               Conread position:76-833
               
               
               Cow position:chr6:52248845-52249638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:803
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 31

               
               
               Conread position:77-753
               
               
               Cow position:chr6:35601347-35600620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 35

               
               
               Conread position:82-547
               
               
               Cow position:chr6:27815929-27816408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:328
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):52, 29

               
               
               Conread position:83-389
               
               
               Cow position:chr6:16699793-16699472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):139, 24

               
               
               Conread position:97-467
               
               
               Cow position:chr6:40319914-40319511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):6, 111

               
               
               Conread position:110-453
               
               
               Cow position:chr6:8382576-8382201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:114-644
               
               
               Cow position:chr6:18987734-18987198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:352
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):151, 36

               
               
               Conread position:122-382
               
               
               Cow position:chr6:1104533-1104794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 153

               
               
               Conread position:122-382
               
               
               Cow position:chr6:47977559-47977276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:122-411
               
               
               Cow position:chr6:47540002-47539688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:123-335
               
               
               Cow position:chr6:32211148-32211374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:123-741
               
               
               Cow position:chr6:2088138-2087474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:433
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:123-834
               
               
               Cow position:chr6:55538650-55539410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:767
               
               
               Alignm identity:525
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:125-803
               
               
               Cow position:chr6:14289895-14290592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 19

               
               
               Conread position:127-369
               
               
               Cow position:chr6:48567872-48568135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):17, 30

               
               
               Conread position:128-380
               
               
               Cow position:chr6:54491318-54491592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):31, 71

               
               
               Conread position:128-382
               
               
               Cow position:chr6:41410223-41409944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:128-390
               
               
               Cow position:chr6:65016420-65016700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:128-822
               
               
               Cow position:chr6:11288846-11289584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 36

               
               
               Conread position:128-834
               
               
               Cow position:chr6:25790116-25790839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 28

               
               
               Conread position:130-761
               
               
               Cow position:chr6:47574405-47573735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 71

               
               
               Conread position:131-522
               
               
               Cow position:chr6:19044808-19044406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:282
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):9, 158

               
               
               Conread position:139-834
               
               
               Cow position:chr6:1096129-1096874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 17

               
               
               Conread position:142-367
               
               
               Cow position:chr6:17415045-17415287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:142-635
               
               
               Cow position:chr6:46283501-46284035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:143-358
               
               
               Cow position:chr6:28979940-28980169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):72, 13

               
               
               Conread position:143-369
               
               
               Cow position:chr6:41823234-41823481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-373
               
               
               Cow position:chr6:42761072-42761323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-377
               
               
               Cow position:chr6:6100548-6100805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:143-380
               
               
               Cow position:chr6:46570581-46570321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:143-381
               
               
               Cow position:chr6:40139692-40139940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr6:3445211-3445470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr6:33921798-33922055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr6:45723522-45723782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr6:54900692-54900432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr6:54978926-54979186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-393
               
               
               Cow position:chr6:444325-444595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-410
               
               
               Cow position:chr6:2607060-2606775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-410
               
               
               Cow position:chr6:54865740-54866019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-453
               
               
               Cow position:chr6:1245318-1245659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr6:12971999-12971658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr6:27859059-27858728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:143-453
               
               
               Cow position:chr6:39080520-39080179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr6:39897460-39897801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr6:57329881-57329540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-454
               
               
               Cow position:chr6:34017121-34017461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-458
               
               
               Cow position:chr6:56842625-56842278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:143-467
               
               
               Cow position:chr6:43789765-43790120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-528
               
               
               Cow position:chr6:48882346-48881931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:286
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-540
               
               
               Cow position:chr6:18912132-18912565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-580
               
               
               Cow position:chr6:45666334-45666804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:313
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-580
               
               
               Cow position:chr6:46292876-46293312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-614
               
               
               Cow position:chr6:21163906-21163388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:351
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-615
               
               
               Cow position:chr6:29484577-29484064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-635
               
               
               Cow position:chr6:3484817-3485355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-692
               
               
               Cow position:chr6:40813964-40813366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 9

               
               
               Conread position:143-719
               
               
               Cow position:chr6:63177646-63177018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-735
               
               
               Cow position:chr6:2186179-2186823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:143-747
               
               
               Cow position:chr6:17111563-17112218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 10

               
               
               Conread position:143-747
               
               
               Cow position:chr6:17387126-17386470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-764
               
               
               Cow position:chr6:33808831-33809504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-804
               
               
               Cow position:chr6:67553835-67553123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-808
               
               
               Cow position:chr6:37388169-37387464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-815
               
               
               Cow position:chr6:479149-478429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-815
               
               
               Cow position:chr6:6182124-6182828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-815
               
               
               Cow position:chr6:39330930-39331652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:143-823
               
               
               Cow position:chr6:5946172-5946905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-824
               
               
               Cow position:chr6:50120330-50121057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr6:2875433-2876162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-825
               
               
               Cow position:chr6:34075473-34074732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-825
               
               
               Cow position:chr6:40975768-40975055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:143-829
               
               
               Cow position:chr6:45479485-45480210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-831
               
               
               Cow position:chr6:20552638-20553378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 122

               
               
               Conread position:143-834
               
               
               Cow position:chr6:889158-888417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr6:7467048-7467790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr6:8205790-8205052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr6:15275637-15276379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr6:16593551-16592825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr6:17121992-17121248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 10

               
               
               Conread position:143-834
               
               
               Cow position:chr6:36531878-36531141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr6:39912925-39912185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr6:45976102-45975369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr6:55239293-55238556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr6:59596858-59596122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:753
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:143-834
               
               
               Cow position:chr6:60876898-60876159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr6:62665378-62664635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:144-409
               
               
               Cow position:chr6:47383187-47382906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):78, 8

               
               
               Conread position:144-485
               
               
               Cow position:chr6:57473848-57473492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):61, 9

               
               
               Conread position:144-814
               
               
               Cow position:chr6:55944840-55945545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 12

               
               
               Conread position:144-822
               
               
               Cow position:chr6:24631652-24632375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 18

               
               
               Conread position:144-822
               
               
               Cow position:chr6:40157934-40158642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:144-825
               
               
               Cow position:chr6:3271880-3272611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 143

               
               
               Conread position:144-833
               
               
               Cow position:chr6:39957673-39956923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:756
               
               
               Alignm identity:487
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):81, 12

               
               
               Conread position:144-834
               
               
               Cow position:chr6:34494274-34493535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 12

               
               
               Conread position:144-835
               
               
               Cow position:chr6:9737662-9738398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 12

               
               
               Conread position:145-382
               
               
               Cow position:chr6:43393495-43393244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:145-442
               
               
               Cow position:chr6:39093218-39092890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-467
               
               
               Cow position:chr6:62333149-62333501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-540
               
               
               Cow position:chr6:51877356-51876934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):75, 11

               
               
               Conread position:145-580
               
               
               Cow position:chr6:55903690-55903212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:326
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):73, 11

               
               
               Conread position:145-584
               
               
               Cow position:chr6:27365767-27365291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:319
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 7

               
               
               Conread position:145-644
               
               
               Cow position:chr6:1834596-1834050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-644
               
               
               Cow position:chr6:46633712-46633174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-693
               
               
               Cow position:chr6:10598586-10598010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-725
               
               
               Cow position:chr6:14897783-14897153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr6:28000795-28001516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr6:44146350-44147087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr6:46948416-46947679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:145-834
               
               
               Cow position:chr6:47039610-47040349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:145-834
               
               
               Cow position:chr6:47381271-47380538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:533
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:146-337
               
               
               Cow position:chr6:34405929-34405719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:146-358
               
               
               Cow position:chr6:24988642-24988408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 67

               
               
               Conread position:146-548
               
               
               Cow position:chr6:54472052-54472484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 14

               
               
               Conread position:146-616
               
               
               Cow position:chr6:65909927-65909411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:335
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:146-628
               
               
               Cow position:chr6:53811170-53810663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:341
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):14, 53

               
               
               Conread position:146-825
               
               
               Cow position:chr6:12352441-12351697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 248

               
               
               Conread position:146-825
               
               
               Cow position:chr6:21832062-21832789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 14

               
               
               Conread position:146-834
               
               
               Cow position:chr6:7137740-7138480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 606

               
               
               Conread position:147-382
               
               
               Cow position:chr6:1817413-1817666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):12, 134

               
               
               Conread position:147-387
               
               
               Cow position:chr6:2545791-2545531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:147-387
               
               
               Cow position:chr6:8145424-8145691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-387
               
               
               Cow position:chr6:18969590-18969839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):12, 146

               
               
               Conread position:147-398
               
               
               Cow position:chr6:56377331-56377604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):70, 40

               
               
               Conread position:147-448
               
               
               Cow position:chr6:38872927-38873261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-452
               
               
               Cow position:chr6:19059875-19059541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-465
               
               
               Cow position:chr6:58950889-58951229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):75, 141

               
               
               Conread position:147-468
               
               
               Cow position:chr6:10266532-10266880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-514
               
               
               Cow position:chr6:25218381-25217988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 324

               
               
               Conread position:147-528
               
               
               Cow position:chr6:2110814-2111215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:147-589
               
               
               Cow position:chr6:1263760-1263276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:329
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):12, 292

               
               
               Conread position:147-616
               
               
               Cow position:chr6:28156672-28157182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:147-622
               
               
               Cow position:chr6:42420719-42420219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:356
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):12, 257

               
               
               Conread position:147-634
               
               
               Cow position:chr6:24623545-24624073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:359
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:147-635
               
               
               Cow position:chr6:4274646-4274133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:348
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):12, 174

               
               
               Conread position:147-645
               
               
               Cow position:chr6:6459710-6459168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 144

               
               
               Conread position:147-815
               
               
               Cow position:chr6:6721570-6720864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:465
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):12, 35

               
               
               Conread position:147-819
               
               
               Cow position:chr6:12647781-12647112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 50

               
               
               Conread position:147-829
               
               
               Cow position:chr6:42267317-42266605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:147-834
               
               
               Cow position:chr6:14851157-14851885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 49

               
               
               Conread position:147-834
               
               
               Cow position:chr6:15137572-15138306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 604

               
               
               Conread position:147-834
               
               
               Cow position:chr6:24242887-24242151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 527

               
               
               Conread position:147-834
               
               
               Cow position:chr6:34503923-34504661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 606

               
               
               Conread position:147-834
               
               
               Cow position:chr6:35873134-35873851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 104

               
               
               Conread position:147-834
               
               
               Cow position:chr6:50571792-50571048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 573

               
               
               Conread position:148-337
               
               
               Cow position:chr6:46666557-46666358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):11, 111

               
               
               Conread position:148-353
               
               
               Cow position:chr6:42565138-42564921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):11, 118

               
               
               Conread position:148-387
               
               
               Cow position:chr6:6200929-6200669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-454
               
               
               Cow position:chr6:28112238-28112579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-458
               
               
               Cow position:chr6:49391738-49392084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-551
               
               
               Cow position:chr6:44098282-44097865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):11, 128

               
               
               Conread position:148-644
               
               
               Cow position:chr6:35703932-35704466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:342
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):11, 145

               
               
               Conread position:148-830
               
               
               Cow position:chr6:58031364-58030645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 11

               
               
               Conread position:148-841
               
               
               Cow position:chr6:51718156-51717411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:752
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 123

               
               
               Conread position:150-825
               
               
               Cow position:chr6:15783394-15784104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 9

               
               
               Conread position:150-825
               
               
               Cow position:chr6:50637851-50637159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 10

               
               
               Conread position:151-446
               
               
               Cow position:chr6:55170064-55169753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):72, 10

               
               
               Conread position:151-825
               
               
               Cow position:chr6:27476013-27475281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 599

               
               
               Conread position:152-834
               
               
               Cow position:chr6:31912580-31913315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 601

               
               
               Conread position:153-337
               
               
               Cow position:chr6:11779888-11780092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:153-644
               
               
               Cow position:chr6:6944382-6944884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 79

               
               
               Conread position:153-778
               
               
               Cow position:chr6:33984391-33983739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 160

               
               
               Conread position:153-825
               
               
               Cow position:chr6:32420535-32419822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 232

               
               
               Conread position:153-834
               
               
               Cow position:chr6:11721621-11722335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 73

               
               
               Conread position:153-834
               
               
               Cow position:chr6:30076677-30077422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:473
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):68, 517

               
               
               Conread position:154-752
               
               
               Cow position:chr6:727049-727678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 96

               
               
               Conread position:155-456
               
               
               Cow position:chr6:10681575-10681243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):67, 115

               
               
               Conread position:157-834
               
               
               Cow position:chr6:7191035-7191690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:446
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):62, 266

               
               
               Conread position:158-377
               
               
               Cow position:chr6:19707018-19706775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-381
               
               
               Cow position:chr6:20515164-20514928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):60, 83

               
               
               Conread position:158-382
               
               
               Cow position:chr6:13494504-13494746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr6:28401234-28400988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr6:38917451-38917697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr6:41495249-41495494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):64, 43

               
               
               Conread position:158-382
               
               
               Cow position:chr6:57308813-57308567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-387
               
               
               Cow position:chr6:25408115-25408356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):67, 92

               
               
               Conread position:158-387
               
               
               Cow position:chr6:28487072-28487321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):64, 109

               
               
               Conread position:158-387
               
               
               Cow position:chr6:56557023-56557274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-410
               
               
               Cow position:chr6:32271621-32271895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:158-442
               
               
               Cow position:chr6:1887210-1887523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):67, 18

               
               
               Conread position:158-451
               
               
               Cow position:chr6:26830116-26829791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr6:20215807-20216134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr6:37217228-37216905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 303

               
               
               Conread position:158-456
               
               
               Cow position:chr6:40760614-40760309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):57, 142

               
               
               Conread position:158-522
               
               
               Cow position:chr6:54887026-54887400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):82, 65

               
               
               Conread position:158-528
               
               
               Cow position:chr6:3987467-3987872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-528
               
               
               Cow position:chr6:11389025-11389430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:281
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-540
               
               
               Cow position:chr6:7216374-7215964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:288
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):65, 30

               
               
               Conread position:158-540
               
               
               Cow position:chr6:7449084-7448664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:290
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):64, 343

               
               
               Conread position:158-540
               
               
               Cow position:chr6:40251211-40251628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:286
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):64, 342

               
               
               Conread position:158-540
               
               
               Cow position:chr6:45901404-45901823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:283
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-540
               
               
               Cow position:chr6:46225376-46225793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:288
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-540
               
               
               Cow position:chr6:55361206-55361626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-548
               
               
               Cow position:chr6:51674356-51673933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 282

               
               
               Conread position:158-580
               
               
               Cow position:chr6:33301258-33300788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:326
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):29, 329

               
               
               Conread position:158-602
               
               
               Cow position:chr6:27093998-27094489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:326
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-626
               
               
               Cow position:chr6:19719156-19718658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:334
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):62, 115

               
               
               Conread position:158-631
               
               
               Cow position:chr6:28136327-28135827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:307
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):64, 128

               
               
               Conread position:158-645
               
               
               Cow position:chr6:18803470-18804004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:351
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-645
               
               
               Cow position:chr6:46763817-46764348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 333

               
               
               Conread position:158-692
               
               
               Cow position:chr6:6568645-6569217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:380
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):61, 419

               
               
               Conread position:158-692
               
               
               Cow position:chr6:21712295-21711705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-692
               
               
               Cow position:chr6:23879470-23880055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:388
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:158-714
               
               
               Cow position:chr6:451675-452283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 43

               
               
               Conread position:158-736
               
               
               Cow position:chr6:1797214-1796585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 381

               
               
               Conread position:158-754
               
               
               Cow position:chr6:11453278-11453928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 590

               
               
               Conread position:158-763
               
               
               Cow position:chr6:47171633-47171013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 65

               
               
               Conread position:158-766
               
               
               Cow position:chr6:12998005-12997350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 300

               
               
               Conread position:158-795
               
               
               Cow position:chr6:65847784-65848463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 585

               
               
               Conread position:158-819
               
               
               Cow position:chr6:13307809-13308510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 350

               
               
               Conread position:158-822
               
               
               Cow position:chr6:11020247-11019529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 596

               
               
               Conread position:158-822
               
               
               Cow position:chr6:11869346-11870059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 225

               
               
               Conread position:158-822
               
               
               Cow position:chr6:53542894-53543606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-825
               
               
               Cow position:chr6:12662740-12663446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 187

               
               
               Conread position:158-825
               
               
               Cow position:chr6:16049706-16050421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 590

               
               
               Conread position:158-825
               
               
               Cow position:chr6:19103319-19104039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-825
               
               
               Cow position:chr6:60166989-60167680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 308

               
               
               Conread position:158-826
               
               
               Cow position:chr6:51150531-51149810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-828
               
               
               Cow position:chr6:53461582-53462289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 98

               
               
               Conread position:158-829
               
               
               Cow position:chr6:57521764-57521039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:158-834
               
               
               Cow position:chr6:1401975-1402668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 271

               
               
               Conread position:158-834
               
               
               Cow position:chr6:1406563-1407256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 271

               
               
               Conread position:158-834
               
               
               Cow position:chr6:6163694-6162990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:458
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):61, 53

               
               
               Conread position:158-834
               
               
               Cow position:chr6:9839540-9840270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:533
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 43

               
               
               Conread position:158-834
               
               
               Cow position:chr6:10044795-10044075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 199

               
               
               Conread position:158-834
               
               
               Cow position:chr6:14929036-14928319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 91

               
               
               Conread position:158-834
               
               
               Cow position:chr6:19712656-19713374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 329

               
               
               Conread position:158-834
               
               
               Cow position:chr6:22043421-22044148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 116

               
               
               Conread position:158-834
               
               
               Cow position:chr6:22737117-22737847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 593

               
               
               Conread position:158-834
               
               
               Cow position:chr6:25374519-25375234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 531

               
               
               Conread position:158-834
               
               
               Cow position:chr6:26324611-26325339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 391

               
               
               Conread position:158-834
               
               
               Cow position:chr6:26771533-26772261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 317

               
               
               Conread position:158-834
               
               
               Cow position:chr6:28160998-28160269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 276

               
               
               Conread position:158-834
               
               
               Cow position:chr6:28184732-28185470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 602

               
               
               Conread position:158-834
               
               
               Cow position:chr6:40278640-40277919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 230

               
               
               Conread position:158-834
               
               
               Cow position:chr6:43087026-43087732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 112

               
               
               Conread position:158-834
               
               
               Cow position:chr6:45937868-45937158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 410

               
               
               Conread position:158-834
               
               
               Cow position:chr6:56451515-56452235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 120

               
               
               Conread position:158-834
               
               
               Cow position:chr6:60379752-60379023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-835
               
               
               Cow position:chr6:3152801-3152077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 309

               
               
               Conread position:159-834
               
               
               Cow position:chr6:26667437-26668163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 223

               
               
               Conread position:160-410
               
               
               Cow position:chr6:7175073-7175342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 106

               
               
               Conread position:160-410
               
               
               Cow position:chr6:8535212-8535484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-410
               
               
               Cow position:chr6:42481468-42481191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-410
               
               
               Cow position:chr6:42617066-42616814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):117, 38

               
               
               Conread position:160-527
               
               
               Cow position:chr6:39109784-39110170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):59, 95

               
               
               Conread position:160-548
               
               
               Cow position:chr6:40031617-40031214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:271
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):60, 269

               
               
               Conread position:160-575
               
               
               Cow position:chr6:44510683-44510226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:313
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):70, 387

               
               
               Conread position:160-597
               
               
               Cow position:chr6:29689440-29688967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 388

               
               
               Conread position:160-639
               
               
               Cow position:chr6:13591899-13591373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:340
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):62, 223

               
               
               Conread position:160-643
               
               
               Cow position:chr6:53672929-53672394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:347
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):62, 479

               
               
               Conread position:160-645
               
               
               Cow position:chr6:53537663-53537129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:359
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-681
               
               
               Cow position:chr6:57857357-57856781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:384
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:160-693
               
               
               Cow position:chr6:18962801-18963337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:373
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):179, 57

               
               
               Conread position:160-786
               
               
               Cow position:chr6:4681195-4680503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:459
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):59, 125

               
               
               Conread position:160-808
               
               
               Cow position:chr6:32427710-32427048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 145

               
               
               Conread position:160-819
               
               
               Cow position:chr6:24583817-24584501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 369

               
               
               Conread position:160-821
               
               
               Cow position:chr6:27342172-27341474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:436
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):45, 268

               
               
               Conread position:160-823
               
               
               Cow position:chr6:18570982-18571707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:463
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):71, 43

               
               
               Conread position:160-829
               
               
               Cow position:chr6:51733668-51732948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 594

               
               
               Conread position:160-831
               
               
               Cow position:chr6:3928721-3928010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 266

               
               
               Conread position:160-834
               
               
               Cow position:chr6:327776-328500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 250

               
               
               Conread position:160-834
               
               
               Cow position:chr6:40550119-40550838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 552

               
               
               Conread position:161-467
               
               
               Cow position:chr6:3016694-3016360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:161-764
               
               
               Cow position:chr6:38439182-38438535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 55

               
               
               Conread position:161-825
               
               
               Cow position:chr6:44017242-44017958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 580

               
               
               Conread position:161-834
               
               
               Cow position:chr6:2366698-2367381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 32

               
               
               Conread position:162-699
               
               
               Cow position:chr6:15181712-15181160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:375
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):177, 63

               
               
               Conread position:162-834
               
               
               Cow position:chr6:181966-182680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 215

               
               
               Conread position:162-834
               
               
               Cow position:chr6:10236767-10236058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 18

               
               
               Conread position:162-834
               
               
               Cow position:chr6:28065575-28064851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 318

               
               
               Conread position:163-472
               
               
               Cow position:chr6:58036867-58036525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):62, 326

               
               
               Conread position:164-791
               
               
               Cow position:chr6:52246082-52245416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 218

               
               
               Conread position:164-814
               
               
               Cow position:chr6:15481138-15480460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 266

               
               
               Conread position:164-824
               
               
               Cow position:chr6:10650223-10650913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 126

               
               
               Conread position:164-824
               
               
               Cow position:chr6:14950077-14950795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 172

               
               
               Conread position:164-824
               
               
               Cow position:chr6:41677510-41676805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 98

               
               
               Conread position:164-825
               
               
               Cow position:chr6:33949581-33950283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 113

               
               
               Conread position:164-834
               
               
               Cow position:chr6:3885922-3886646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 592

               
               
               Conread position:164-834
               
               
               Cow position:chr6:43797315-43798052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 600

               
               
               Conread position:165-548
               
               
               Cow position:chr6:33896069-33896479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):59, 84

               
               
               Conread position:165-761
               
               
               Cow position:chr6:41556890-41556268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:401
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):58, 91

               
               
               Conread position:166-542
               
               
               Cow position:chr6:9322576-9322170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 90

               
               
               Conread position:167-795
               
               
               Cow position:chr6:706578-705905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 586

               
               
               Conread position:167-815
               
               
               Cow position:chr6:17049957-17049250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 581

               
               
               Conread position:169-793
               
               
               Cow position:chr6:48327786-48327114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:417
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):55, 538

               
               
               Conread position:170-571
               
               
               Cow position:chr6:16220603-16220996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):123, 53

               
               
               Conread position:170-644
               
               
               Cow position:chr6:15962366-15962861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:320
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):121, 61

               
               
               Conread position:171-803
               
               
               Cow position:chr6:618999-618307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:453
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):54, 376

               
               
               Conread position:175-793
               
               
               Cow position:chr6:8633767-8634399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 244

               
               
               Conread position:176-828
               
               
               Cow position:chr6:44949880-44950594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:457
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):44, 89

               
               
               Conread position:182-834
               
               
               Cow position:chr6:63406355-63405671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:431
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):40, 157

               
               
               Conread position:186-548
               
               
               Cow position:chr6:43779251-43778867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 136

               
               
               Conread position:189-382
               
               
               Cow position:chr6:39997527-39997742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:189-398
               
               
               Cow position:chr6:55041613-55041845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 196

               
               
               Conread position:189-528
               
               
               Cow position:chr6:6601352-6601711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):32, 246

               
               
               Conread position:189-642
               
               
               Cow position:chr6:11638650-11639142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:332
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):34, 23

               
               
               Conread position:189-818
               
               
               Cow position:chr6:64719873-64719194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 563

               
               
               Conread position:189-830
               
               
               Cow position:chr6:65819024-65819715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 313

               
               
               Conread position:189-834
               
               
               Cow position:chr6:1537252-1536565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 36

               
               
               Conread position:189-834
               
               
               Cow position:chr6:40863478-40864172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 74

               
               
               Conread position:189-834
               
               
               Cow position:chr6:60332903-60332203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 568

               
               
               Conread position:201-690
               
               
               Cow position:chr6:21856829-21857362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:349
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):22, 289

               
               
               Conread position:201-795
               
               
               Cow position:chr6:31941413-31940766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 552

               
               
               Conread position:204-382
               
               
               Cow position:chr6:917597-917401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:207-833
               
               
               Cow position:chr6:1498731-1498063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 15

               
               
               Conread position:208-580
               
               
               Cow position:chr6:56926264-56925855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):28, 374

               
               
               Conread position:208-585
               
               
               Cow position:chr6:21588513-21588100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:208-815
               
               
               Cow position:chr6:28102342-28102986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 375

               
               
               Conread position:208-829
               
               
               Cow position:chr6:65874757-65875416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 102

               
               
               Conread position:214-834
               
               
               Cow position:chr6:43187634-43186965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 533

               
               
               Conread position:221-410
               
               
               Cow position:chr6:32269740-32269939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 169

               
               
               Conread position:221-526
               
               
               Cow position:chr6:17149660-17149981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):15, 43

               
               
               Conread position:221-581
               
               
               Cow position:chr6:32018586-32018990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):15, 388

               
               
               Conread position:221-645
               
               
               Cow position:chr6:32287072-32286608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 294

               
               
               Conread position:221-831
               
               
               Cow position:chr6:28549520-28550198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:449
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):15, 547

               
               
               Conread position:221-832
               
               
               Cow position:chr6:52189474-52190121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:415
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):12, 413

               
               
               Conread position:223-825
               
               
               Cow position:chr6:35416459-35417084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 307

               
               
               Conread position:225-622
               
               
               Cow position:chr6:58594894-58595328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:291
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):22, 207

               
               
               Conread position:229-825
               
               
               Cow position:chr6:16703252-16703860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 51

               
               
               Conread position:235-715
               
               
               Cow position:chr6:2618063-2618584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 494

               
               
               Conread position:235-738
               
               
               Cow position:chr6:7105028-7105573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:364
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):58, 152

               
               
               Conread position:243-709
               
               
               Cow position:chr6:843333-843843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:333
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 495

               
               
               Conread position:243-813
               
               
               Cow position:chr6:10612319-10611709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 495

               
               
               Conread position:244-631
               
               
               Cow position:chr6:42988325-42988732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:280
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):95, 36

               
               
               Conread position:245-708
               
               
               Cow position:chr6:64426276-64425778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 182

               
               
               Conread position:245-834
               
               
               Cow position:chr6:3893156-3893782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 40

               
               
               Conread position:247-833
               
               
               Cow position:chr6:14144502-14143894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:388
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):40, 19

               
               
               Conread position:248-595
               
               
               Cow position:chr6:6471455-6471824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:244
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):91, 272

               
               
               Conread position:250-834
               
               
               Cow position:chr6:4903514-4904124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 245

               
               
               Conread position:253-579
               
               
               Cow position:chr6:48947186-48947531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):89, 27

               
               
               Conread position:253-760
               
               
               Cow position:chr6:47149493-47150035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:367
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):42, 7

               
               
               Conread position:258-765
               
               
               Cow position:chr6:12535187-12534656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:350
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):31, 84

               
               
               Conread position:260-834
               
               
               Cow position:chr6:28172374-28171764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 86

               
               
               Conread position:261-635
               
               
               Cow position:chr6:224038-224442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:263-459
               
               
               Cow position:chr6:2582070-2581859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:269-693
               
               
               Cow position:chr6:28481793-28481337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:305
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):22, 362

               
               
               Conread position:269-693
               
               
               Cow position:chr6:34236636-34237087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:295
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):22, 356

               
               
               Conread position:271-834
               
               
               Cow position:chr6:55474764-55474167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 461

               
               
               Conread position:277-522
               
               
               Cow position:chr6:65941557-65941817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):57, 193

               
               
               Conread position:277-800
               
               
               Cow position:chr6:47848476-47849006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:360
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):68, 129

               
               
               Conread position:277-807
               
               
               Cow position:chr6:35724836-35724282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:351
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):62, 99

               
               
               Conread position:278-830
               
               
               Cow position:chr6:30316494-30317079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 330

               
               
               Conread position:282-822
               
               
               Cow position:chr6:16766395-16766965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 186

               
               
               Conread position:289-812
               
               
               Cow position:chr6:62853001-62852465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:336
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):50, 104

               
               
               Conread position:290-714
               
               
               Cow position:chr6:17556234-17556692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:315
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):47, 178

               
               
               Conread position:290-818
               
               
               Cow position:chr6:3574225-3573673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 179

               
               
               Conread position:290-824
               
               
               Cow position:chr6:9733552-9734093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:358
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:291-765
               
               
               Cow position:chr6:52977729-52978226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 116

               
               
               Conread position:291-804
               
               
               Cow position:chr6:27526528-27527067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:352
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):57, 436

               
               
               Conread position:291-832
               
               
               Cow position:chr6:37386583-37386012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:375
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):48, 81

               
               
               Conread position:292-635
               
               
               Cow position:chr6:13314593-13314965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:250
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):47, 195

               
               
               Conread position:292-692
               
               
               Cow position:chr6:6034362-6034796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):47, 31

               
               
               Conread position:292-729
               
               
               Cow position:chr6:67448489-67448961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:313
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):49, 437

               
               
               Conread position:292-834
               
               
               Cow position:chr6:6557398-6556821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 443

               
               
               Conread position:292-834
               
               
               Cow position:chr6:61829666-61829089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 443

               
               
               Conread position:294-834
               
               
               Cow position:chr6:15924160-15924729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 157

               
               
               Conread position:295-522
               
               
               Cow position:chr6:1109442-1109198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:299-834
               
               
               Cow position:chr6:34843283-34843853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 402

               
               
               Conread position:301-730
               
               
               Cow position:chr6:7112510-7112969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:324
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):38, 203

               
               
               Conread position:302-782
               
               
               Cow position:chr6:67173983-67173467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 434

               
               
               Conread position:311-779
               
               
               Cow position:chr6:6595836-6595338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:338
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):28, 53

               
               
               Conread position:311-806
               
               
               Cow position:chr6:529475-529998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 208

               
               
               Conread position:311-815
               
               
               Cow position:chr6:33508664-33508144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:346
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):28, 53

               
               
               Conread position:311-834
               
               
               Cow position:chr6:43621149-43620591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 424

               
               
               Conread position:315-808
               
               
               Cow position:chr6:65049272-65049773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:333
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):26, 106

               
               
               Conread position:315-815
               
               
               Cow position:chr6:39848329-39847795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:343
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):19, 182

               
               
               Conread position:315-834
               
               
               Cow position:chr6:12514903-12514377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:351
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):33, 200

               
               
               Conread position:336-834
               
               
               Cow position:chr6:36230137-36230666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 395

               
               
               Conread position:336-834
               
               
               Cow position:chr6:51868376-51867855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 144

               
               
               Conread position:340-832
               
               
               Cow position:chr6:65868169-65867649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 311

               
               
               Conread position:340-834
               
               
               Cow position:chr6:59619461-59618929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 390

               
               
               Conread position:341-818
               
               
               Cow position:chr6:53935254-53935756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 113

               
               
               Conread position:341-831
               
               
               Cow position:chr6:3119155-3119679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:355
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):42, 242

               
               
               Conread position:342-825
               
               
               Cow position:chr6:58605909-58605400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 29

               
               
               Conread position:342-834
               
               
               Cow position:chr6:30269519-30270043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 392

               
               
               Conread position:342-834
               
               
               Cow position:chr6:50485401-50485913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 261

               
               
               Conread position:345-631
               
               
               Cow position:chr6:52557271-52557563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):44, 171

               
               
               Conread position:348-825
               
               
               Cow position:chr6:68030556-68030048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 383

               
               
               Conread position:352-831
               
               
               Cow position:chr6:11353800-11354300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:342
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):31, 172

               
               
               Conread position:354-834
               
               
               Cow position:chr6:52900317-52899811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 110

               
               
               Conread position:362-834
               
               
               Cow position:chr6:27151078-27151580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 369

               
               
               Conread position:364-834
               
               
               Cow position:chr6:12629252-12628762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 183

               
               
               Conread position:372-778
               
               
               Cow position:chr6:1104824-1105233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:282
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):11, 5

               
               
               Conread position:374-767
               
               
               Cow position:chr6:25357521-25357932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):109, 64

               
               
               Conread position:374-834
               
               
               Cow position:chr6:41192671-41192183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:325
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):41, 353

               
               
               Conread position:378-833
               
               
               Cow position:chr6:31009479-31009947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:308
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:380-746
               
               
               Cow position:chr6:58016689-58016305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:393-824
               
               
               Cow position:chr6:28476389-28475929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):129, 102

               
               
               Conread position:410-834
               
               
               Cow position:chr6:2544035-2543589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 36

               
               
               Conread position:412-815
               
               
               Cow position:chr6:366194-365770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:414-822
               
               
               Cow position:chr6:917346-916915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 311

               
               
               Conread position:421-805
               
               
               Cow position:chr6:2453141-2452737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 285

               
               
               Conread position:421-825
               
               
               Cow position:chr6:1507215-1507641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-825
               
               
               Cow position:chr6:43048900-43049326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:287
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-829
               
               
               Cow position:chr6:41408699-41408271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 55

               
               
               Conread position:421-831
               
               
               Cow position:chr6:42616390-42615962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 46

               
               
               Conread position:421-834
               
               
               Cow position:chr6:20350794-20351229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr6:33489759-33490194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr6:66188505-66188940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:426-763
               
               
               Cow position:chr6:45280226-45279868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 185

               
               
               Conread position:426-767
               
               
               Cow position:chr6:67211305-67211662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):102, 22

               
               
               Conread position:426-834
               
               
               Cow position:chr6:45723858-45724285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 17

               
               
               Conread position:427-631
               
               
               Cow position:chr6:18497611-18497391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:427-781
               
               
               Cow position:chr6:18150003-18150370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:252
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):52, 28

               
               
               Conread position:427-808
               
               
               Cow position:chr6:14497677-14498060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:427-825
               
               
               Cow position:chr6:46218981-46218559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):17, 295

               
               
               Conread position:427-834
               
               
               Cow position:chr6:57182102-57181680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 117

               
               
               Conread position:427-835
               
               
               Cow position:chr6:43330135-43330558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:273
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):60, 46

               
               
               Conread position:428-834
               
               
               Cow position:chr6:11168794-11168366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):50, 295

               
               
               Conread position:429-787
               
               
               Cow position:chr6:56377598-56377986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:259
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):58, 301

               
               
               Conread position:429-834
               
               
               Cow position:chr6:28488292-28488708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):42, 287

               
               
               Conread position:429-834
               
               
               Cow position:chr6:65930544-65930105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:288
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):63, 25

               
               
               Conread position:431-834
               
               
               Cow position:chr6:38873377-38873798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):45, 292

               
               
               Conread position:439-778
               
               
               Cow position:chr6:18970164-18970511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:251
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):38, 274

               
               
               Conread position:439-834
               
               
               Cow position:chr6:21976215-21975813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):53, 37

               
               
               Conread position:440-778
               
               
               Cow position:chr6:55041854-55042205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:440-803
               
               
               Cow position:chr6:16699460-16699097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):50, 10

               
               
               Conread position:464-849
               
               
               Cow position:chr6:2581652-2581259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):8, 250

               
               
               Conread position:489-769
               
               
               Cow position:chr6:40760245-40759955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:491-825
               
               
               Cow position:chr6:39898172-39897819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 230

               
               
               Conread position:491-825
               
               
               Cow position:chr6:43790354-43790709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:251
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):34, 188

               
               
               Conread position:491-834
               
               
               Cow position:chr6:8536073-8536435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):34, 147

               
               
               Conread position:491-834
               
               
               Cow position:chr6:17595063-17595425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 230

               
               
               Conread position:491-834
               
               
               Cow position:chr6:38932032-38932394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr6:49826030-49826392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:493-803
               
               
               Cow position:chr6:47025257-47024931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):31, 221

               
               
               Conread position:496-775
               
               
               Cow position:chr6:58072873-58072579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):26, 216

               
               
               Conread position:498-834
               
               
               Cow position:chr6:48875136-48875471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):17, 36

               
               
               Conread position:505-807
               
               
               Cow position:chr6:7759056-7759356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:505-815
               
               
               Cow position:chr6:58951927-58952242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 38

               
               
               Conread position:505-829
               
               
               Cow position:chr6:10266894-10267226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:505-834
               
               
               Cow position:chr6:18519885-18520222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:506-825
               
               
               Cow position:chr6:1888241-1888568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 46

               
               
               Conread position:506-829
               
               
               Cow position:chr6:48376-48707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:507-819
               
               
               Cow position:chr6:50721300-50720973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):23, 12

               
               
               Conread position:514-834
               
               
               Cow position:chr6:34129644-34129318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:519-834
               
               
               Cow position:chr6:1380275-1380597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):10, 32

               
               
               Conread position:521-815
               
               
               Cow position:chr6:6165818-6165522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 27

               
               
               Conread position:521-828
               
               
               Cow position:chr6:35883752-35883438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:529-834
               
               
               Cow position:chr6:52696804-52696498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):108, 21

               
               
               Conread position:538-825
               
               
               Cow position:chr6:62577016-62577313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):14, 172

               
               
               Conread position:539-800
               
               
               Cow position:chr6:61065755-61065494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 11

               
               
               Conread position:545-834
               
               
               Cow position:chr6:1818642-1818939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:545-834
               
               
               Cow position:chr6:49165444-49165742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):28, 166

               
               
               Conread position:548-831
               
               
               Cow position:chr6:44510217-44509926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):25, 158

               
               
               Conread position:553-834
               
               
               Cow position:chr6:25408835-25409115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):146, 163

               
               
               Conread position:569-822
               
               
               Cow position:chr6:15154239-15153983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):27, 21

               
               
               Conread position:569-825
               
               
               Cow position:chr6:27761832-27761571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-828
               
               
               Cow position:chr6:6159786-6159526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):77, 134

               
               
               Conread position:569-834
               
               
               Cow position:chr6:17927553-17927284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-834
               
               
               Cow position:chr6:22679985-22679715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-834
               
               
               Cow position:chr6:39359069-39359326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):78, 130

               
               
               Conread position:569-834
               
               
               Cow position:chr6:45591678-45591408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:570-822
               
               
               Cow position:chr6:3686079-3685824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):67, 31

               
               
               Conread position:571-834
               
               
               Cow position:chr6:25218081-25217817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):75, 100

               
               
               Conread position:572-834
               
               
               Cow position:chr6:44096953-44096692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):72, 131

               
               
               Conread position:575-816
               
               
               Cow position:chr6:14065568-14065325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 126

               
               
               Conread position:575-834
               
               
               Cow position:chr6:55902347-55902082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):73, 130

               
               
               Conread position:590-834
               
               
               Cow position:chr6:8755708-8755957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):58, 117

               
               
               Conread position:591-789
               
               
               Cow position:chr6:40730304-40730102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:591-825
               
               
               Cow position:chr6:9587165-9586934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:591-825
               
               
               Cow position:chr6:43778627-43778388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):55, 80

               
               
               Conread position:591-834
               
               
               Cow position:chr6:1262990-1262742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):55, 80

               
               
               Conread position:591-834
               
               
               Cow position:chr6:1274882-1275129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):57, 114

               
               
               Conread position:592-819
               
               
               Cow position:chr6:11829529-11829763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):54, 110

               
               
               Conread position:593-834
               
               
               Cow position:chr6:41389350-41389586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):54, 107

               
               
               Conread position:601-825
               
               
               Cow position:chr6:4467709-4467480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):36, 68

               
               
               Conread position:601-832
               
               
               Cow position:chr6:236778-237013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):37, 100

               
               
               Conread position:603-834
               
               
               Cow position:chr6:14264932-14264703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):29, 62

               
               
               Conread position:609-819
               
               
               Cow position:chr6:6474357-6474566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:613-824
               
               
               Cow position:chr6:61179147-61179359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):38, 54

               
               
               Conread position:616-825
               
               
               Cow position:chr6:13315230-13315444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):30, 89

               
               
               Conread position:621-834
               
               
               Cow position:chr6:51876900-51876684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):27, 82

               
               
               Conread position:624-824
               
               
               Cow position:chr6:10680952-10680748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 63

               
               
               Conread position:645-781
               
               
               Cow position:chr6:46372777-46372910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:646-834
               
               
               Cow position:chr6:12970875-12971057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:647-834
               
               
               Cow position:chr6:66277486-66277300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:659-860
               
               
               Cow position:chr6:38672261-38672066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):182, 5

               
               
               Conread position:664-770
               
               
               Cow position:chr6:10598009-10597904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:665-834
               
               
               Cow position:chr6:14132715-14132883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:666-825
               
               
               Cow position:chr6:2641574-2641416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:666-830
               
               
               Cow position:chr6:10635107-10634944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):97, 10

               
               
               Conread position:666-834
               
               
               Cow position:chr6:35967439-35967606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:667-822
               
               
               Cow position:chr6:18987045-18986897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:670-814
               
               
               Cow position:chr6:64888002-64887859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:671-822
               
               
               Cow position:chr6:66548495-66548346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:675-834
               
               
               Cow position:chr6:35824864-35824701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:676-835
               
               
               Cow position:chr6:10694463-10694313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:692-825
               
               
               Cow position:chr6:224911-225044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-829
               
               
               Cow position:chr6:23880358-23880486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr6:2377700-2377564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr6:21711557-21711421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:701-824
               
               
               Cow position:chr6:59504442-59504324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:701-834
               
               
               Cow position:chr6:34018406-34018273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:705-833
               
               
               Cow position:chr6:31978557-31978430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:716-834
               
               
               Cow position:chr6:68871317-68871199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-381
               
               
               Cow position:chr7:19912679-19913087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):34, 91

               
               
               Conread position:1-518
               
               
               Cow position:chr7:27473466-27474003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 57

               
               
               Conread position:2-824
               
               
               Cow position:chr7:30172396-30173267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:887
               
               
               Alignm identity:589
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 106

               
               
               Conread position:7-796
               
               
               Cow position:chr7:21876905-21877727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:845
               
               
               Alignm identity:548
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:54-834
               
               
               Cow position:chr7:60726653-60727504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:856
               
               
               Alignm identity:583
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 19

               
               
               Conread position:69-540
               
               
               Cow position:chr7:39020547-39021020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:324
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):65, 31

               
               
               Conread position:73-277
               
               
               Cow position:chr7:41727438-41727220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:73-330
               
               
               Cow position:chr7:19069021-19069308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):73, 28

               
               
               Conread position:73-337
               
               
               Cow position:chr7:24764336-24764626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-354
               
               
               Cow position:chr7:20770284-20770593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-358
               
               
               Cow position:chr7:34422756-34423048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 38

               
               
               Conread position:73-377
               
               
               Cow position:chr7:64573565-64573887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-382
               
               
               Cow position:chr7:65465938-65465590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-387
               
               
               Cow position:chr7:39131714-39132036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:73-387
               
               
               Cow position:chr7:68929066-68928721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 29

               
               
               Conread position:73-398
               
               
               Cow position:chr7:29509516-29509162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):22, 39

               
               
               Conread position:73-408
               
               
               Cow position:chr7:22357945-22358302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):21, 40

               
               
               Conread position:73-410
               
               
               Cow position:chr7:29280450-29280819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):21, 29

               
               
               Conread position:73-410
               
               
               Cow position:chr7:46799281-46799663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-441
               
               
               Cow position:chr7:39530283-39530682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):20, 32

               
               
               Conread position:73-445
               
               
               Cow position:chr7:44697425-44697012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:300
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):21, 29

               
               
               Conread position:73-457
               
               
               Cow position:chr7:49735556-49735137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):76, 35

               
               
               Conread position:73-472
               
               
               Cow position:chr7:65121901-65121463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:303
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):71, 28

               
               
               Conread position:73-522
               
               
               Cow position:chr7:37519548-37520031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:327
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:73-527
               
               
               Cow position:chr7:61602268-61602745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 28

               
               
               Conread position:73-528
               
               
               Cow position:chr7:44597155-44597659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:346
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:73-570
               
               
               Cow position:chr7:58614352-58613801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:369
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):73, 28

               
               
               Conread position:73-588
               
               
               Cow position:chr7:32283459-32282913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:375
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):74, 34

               
               
               Conread position:73-631
               
               
               Cow position:chr7:23477758-23478356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 37

               
               
               Conread position:73-635
               
               
               Cow position:chr7:51019340-51018745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:378
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 40

               
               
               Conread position:73-643
               
               
               Cow position:chr7:5849542-5850162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 39

               
               
               Conread position:73-644
               
               
               Cow position:chr7:66223918-66224529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 58

               
               
               Conread position:73-647
               
               
               Cow position:chr7:25230810-25230176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:73-694
               
               
               Cow position:chr7:34974087-34973434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 34

               
               
               Conread position:73-697
               
               
               Cow position:chr7:4115927-4116586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:73-741
               
               
               Cow position:chr7:39401508-39400775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:526
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:73-805
               
               
               Cow position:chr7:25416716-25415916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:803
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:73-819
               
               
               Cow position:chr7:38145123-38145898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:526
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 29

               
               
               Conread position:73-822
               
               
               Cow position:chr7:26455472-26456280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:812
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 285

               
               
               Conread position:73-825
               
               
               Cow position:chr7:20435611-20434798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:817
               
               
               Alignm identity:546
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-825
               
               
               Cow position:chr7:21423592-21424404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:820
               
               
               Alignm identity:548
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:73-825
               
               
               Cow position:chr7:34819842-34819019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:826
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr7:1441056-1441884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:832
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr7:61576385-61577175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:804
               
               
               Alignm identity:535
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-835
               
               
               Cow position:chr7:46749754-46748938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:821
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 34

               
               
               Conread position:74-775
               
               
               Cow position:chr7:7107271-7107993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:477
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):62, 30

               
               
               Conread position:74-833
               
               
               Cow position:chr7:44590306-44591114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:821
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 33

               
               
               Conread position:75-548
               
               
               Cow position:chr7:49069859-49070380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:351
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):74, 29

               
               
               Conread position:78-834
               
               
               Cow position:chr7:21315652-21314842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:829
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 30

               
               
               Conread position:84-387
               
               
               Cow position:chr7:11640821-11640500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):18, 181

               
               
               Conread position:93-645
               
               
               Cow position:chr7:33392637-33392027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:96-610
               
               
               Cow position:chr7:40405011-40404454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 27

               
               
               Conread position:121-834
               
               
               Cow position:chr7:27509104-27508340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:771
               
               
               Alignm identity:548
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 249

               
               
               Conread position:122-825
               
               
               Cow position:chr7:25082955-25082221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 156

               
               
               Conread position:123-644
               
               
               Cow position:chr7:21849736-21850258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:352
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):18, 7

               
               
               Conread position:123-832
               
               
               Cow position:chr7:52383507-52384257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:755
               
               
               Alignm identity:534
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 35

               
               
               Conread position:131-796
               
               
               Cow position:chr7:19881808-19882498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 104

               
               
               Conread position:138-387
               
               
               Cow position:chr7:60489468-60489210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 125

               
               
               Conread position:138-834
               
               
               Cow position:chr7:49784031-49784767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 83

               
               
               Conread position:139-691
               
               
               Cow position:chr7:54638185-54638790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:395
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):9, 138

               
               
               Conread position:139-738
               
               
               Cow position:chr7:10450570-10451210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 390

               
               
               Conread position:141-388
               
               
               Cow position:chr7:39451731-39451994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):81, 11

               
               
               Conread position:142-360
               
               
               Cow position:chr7:6566145-6565909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:142-382
               
               
               Cow position:chr7:41771470-41771731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 18

               
               
               Conread position:142-579
               
               
               Cow position:chr7:34412828-34413319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:334
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:142-823
               
               
               Cow position:chr7:19466803-19467531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:142-824
               
               
               Cow position:chr7:62360984-62360256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:142-834
               
               
               Cow position:chr7:442562-443308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:143-300
               
               
               Cow position:chr7:26737860-26738023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-337
               
               
               Cow position:chr7:3130513-3130303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-337
               
               
               Cow position:chr7:48437545-48437751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-365
               
               
               Cow position:chr7:37454743-37454502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):86, 13

               
               
               Conread position:143-372
               
               
               Cow position:chr7:18509040-18509283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):73, 13

               
               
               Conread position:143-373
               
               
               Cow position:chr7:20151973-20151722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr7:6809024-6808764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr7:54668039-54668299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr7:55091058-55090798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr7:67435379-67435639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-387
               
               
               Cow position:chr7:42429300-42429038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-410
               
               
               Cow position:chr7:40120904-40120614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-433
               
               
               Cow position:chr7:53992164-53991866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-440
               
               
               Cow position:chr7:68529288-68528971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-442
               
               
               Cow position:chr7:1399661-1399331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-451
               
               
               Cow position:chr7:35111028-35110688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-452
               
               
               Cow position:chr7:42334820-42334482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-452
               
               
               Cow position:chr7:57259609-57259940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-453
               
               
               Cow position:chr7:54548131-54547791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr7:62766631-62766290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-465
               
               
               Cow position:chr7:48548462-48548808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-480
               
               
               Cow position:chr7:49750594-49750224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:265
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-490
               
               
               Cow position:chr7:54478612-54478983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-509
               
               
               Cow position:chr7:16845790-16845396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-522
               
               
               Cow position:chr7:33810118-33809709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-523
               
               
               Cow position:chr7:18865687-18865274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:285
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-526
               
               
               Cow position:chr7:23276815-23277219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-540
               
               
               Cow position:chr7:27713277-27712847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-540
               
               
               Cow position:chr7:65819031-65819455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:283
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-551
               
               
               Cow position:chr7:54807655-54808099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-551
               
               
               Cow position:chr7:65712341-65711896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-578
               
               
               Cow position:chr7:14539323-14538846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:323
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-580
               
               
               Cow position:chr7:27573509-27573035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:322
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-580
               
               
               Cow position:chr7:37190361-37189881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:323
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-580
               
               
               Cow position:chr7:52761834-52762317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:336
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-580
               
               
               Cow position:chr7:64406003-64405526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-580
               
               
               Cow position:chr7:66298309-66298782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:329
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-599
               
               
               Cow position:chr7:23457320-23457821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-604
               
               
               Cow position:chr7:49217446-49216945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:335
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-617
               
               
               Cow position:chr7:12659541-12660036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 13

               
               
               Conread position:143-627
               
               
               Cow position:chr7:8140388-8140919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-633
               
               
               Cow position:chr7:29363313-29363833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:352
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-644
               
               
               Cow position:chr7:21148124-21147582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:362
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-645
               
               
               Cow position:chr7:14131803-14131254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-645
               
               
               Cow position:chr7:62732677-62732124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-708
               
               
               Cow position:chr7:34568617-34568036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:395
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):16, 10

               
               
               Conread position:143-714
               
               
               Cow position:chr7:41463736-41463112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 13

               
               
               Conread position:143-721
               
               
               Cow position:chr7:18256243-18256873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:143-736
               
               
               Cow position:chr7:60279223-60279870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-738
               
               
               Cow position:chr7:43110069-43110719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-742
               
               
               Cow position:chr7:52167483-52166831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-753
               
               
               Cow position:chr7:67872450-67871797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:143-765
               
               
               Cow position:chr7:46187704-46187044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 10

               
               
               Conread position:143-804
               
               
               Cow position:chr7:34229037-34229750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-810
               
               
               Cow position:chr7:47909627-47910335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-815
               
               
               Cow position:chr7:66908937-66908215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:143-819
               
               
               Cow position:chr7:58196471-58197206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr7:21123976-21124709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr7:53070815-53070091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-829
               
               
               Cow position:chr7:20795786-20796500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-833
               
               
               Cow position:chr7:63947426-63948157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:541
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr7:194221-194952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr7:1367000-1367743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr7:3158984-3158245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr7:10427731-10428468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr7:10604399-10605144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr7:16934999-16934255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr7:24804824-24805541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr7:33308549-33309298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:753
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr7:35275817-35276504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 58

               
               
               Conread position:143-834
               
               
               Cow position:chr7:42301747-42302476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr7:45171226-45170487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr7:45765632-45766371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr7:47190050-47190789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr7:56887318-56888055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr7:57517330-57516607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr7:64355712-64354967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr7:65869808-65870553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:752
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 9

               
               
               Conread position:143-873
               
               
               Cow position:chr7:54186714-54187497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:787
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 16

               
               
               Conread position:144-329
               
               
               Cow position:chr7:15258406-15258210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):81, 12

               
               
               Conread position:144-468
               
               
               Cow position:chr7:45954552-45954220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-522
               
               
               Cow position:chr7:50020258-50020658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 12

               
               
               Conread position:144-526
               
               
               Cow position:chr7:4452056-4451644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:144-527
               
               
               Cow position:chr7:32276991-32276607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:273
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-788
               
               
               Cow position:chr7:12506327-12505645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:422
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 19

               
               
               Conread position:144-795
               
               
               Cow position:chr7:59712919-59712238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 113

               
               
               Conread position:144-800
               
               
               Cow position:chr7:39498593-39499310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:473
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-825
               
               
               Cow position:chr7:58718802-58718088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:144-835
               
               
               Cow position:chr7:45928480-45929220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:552
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:145-329
               
               
               Cow position:chr7:51917519-51917325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-386
               
               
               Cow position:chr7:41745662-41745915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-387
               
               
               Cow position:chr7:30115266-30115526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:145-423
               
               
               Cow position:chr7:15400148-15399849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):6, 16

               
               
               Conread position:145-451
               
               
               Cow position:chr7:68236526-68236218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):75, 7

               
               
               Conread position:145-540
               
               
               Cow position:chr7:62394470-62394045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:293
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-547
               
               
               Cow position:chr7:21009503-21009912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-580
               
               
               Cow position:chr7:27552242-27552712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:327
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):80, 11

               
               
               Conread position:145-644
               
               
               Cow position:chr7:64238368-64238913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:364
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-726
               
               
               Cow position:chr7:44745159-44745773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:404
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-736
               
               
               Cow position:chr7:548466-547824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-825
               
               
               Cow position:chr7:529644-528932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 15

               
               
               Conread position:145-834
               
               
               Cow position:chr7:1330725-1331462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr7:13237917-13238653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr7:37507064-37507802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr7:47045912-47045225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 14

               
               
               Conread position:146-527
               
               
               Cow position:chr7:62793238-62792824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 344

               
               
               Conread position:146-773
               
               
               Cow position:chr7:49743815-49743137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 392

               
               
               Conread position:146-832
               
               
               Cow position:chr7:36472642-36471925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 414

               
               
               Conread position:147-293
               
               
               Cow position:chr7:46411651-46411494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-337
               
               
               Cow position:chr7:10998459-10998249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-382
               
               
               Cow position:chr7:13847740-13847493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:147-390
               
               
               Cow position:chr7:45748434-45748698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:147-452
               
               
               Cow position:chr7:48762472-48762812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-522
               
               
               Cow position:chr7:5404093-5404494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:279
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):5, 311

               
               
               Conread position:147-540
               
               
               Cow position:chr7:30664718-30664284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):12, 325

               
               
               Conread position:147-569
               
               
               Cow position:chr7:24797690-24798156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:328
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):12, 272

               
               
               Conread position:147-580
               
               
               Cow position:chr7:14135122-14135599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:331
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):12, 287

               
               
               Conread position:147-730
               
               
               Cow position:chr7:19463161-19463792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:147-777
               
               
               Cow position:chr7:759165-759849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 492

               
               
               Conread position:147-786
               
               
               Cow position:chr7:64236829-64237532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:456
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):12, 522

               
               
               Conread position:147-806
               
               
               Cow position:chr7:21231329-21232029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 360

               
               
               Conread position:147-813
               
               
               Cow position:chr7:27394816-27394103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 187

               
               
               Conread position:147-824
               
               
               Cow position:chr7:536164-536873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 118

               
               
               Conread position:147-825
               
               
               Cow position:chr7:39795551-39794825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 566

               
               
               Conread position:147-831
               
               
               Cow position:chr7:63131216-63130505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:443
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 63

               
               
               Conread position:147-834
               
               
               Cow position:chr7:13530236-13530954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 76

               
               
               Conread position:147-834
               
               
               Cow position:chr7:33068847-33069552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 50

               
               
               Conread position:147-834
               
               
               Cow position:chr7:34152631-34151893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 450

               
               
               Conread position:147-834
               
               
               Cow position:chr7:40318393-40317651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 55

               
               
               Conread position:147-834
               
               
               Cow position:chr7:53405061-53404348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:440
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):12, 97

               
               
               Conread position:147-834
               
               
               Cow position:chr7:67816334-67815590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 405

               
               
               Conread position:148-379
               
               
               Cow position:chr7:25194969-25194744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 33

               
               
               Conread position:148-382
               
               
               Cow position:chr7:36745765-36745507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-398
               
               
               Cow position:chr7:37372502-37372227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-528
               
               
               Cow position:chr7:10070250-10070661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:289
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):11, 389

               
               
               Conread position:148-555
               
               
               Cow position:chr7:20536765-20536331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 382

               
               
               Conread position:148-580
               
               
               Cow position:chr7:41475040-41474567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 120

               
               
               Conread position:148-587
               
               
               Cow position:chr7:13854884-13854424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:316
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:148-711
               
               
               Cow position:chr7:44621732-44622331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 40

               
               
               Conread position:148-796
               
               
               Cow position:chr7:24873606-24874307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 600

               
               
               Conread position:148-822
               
               
               Cow position:chr7:34489598-34488870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 598

               
               
               Conread position:148-831
               
               
               Cow position:chr7:24851568-24852303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:488
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:148-834
               
               
               Cow position:chr7:21990334-21989586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 602

               
               
               Conread position:148-834
               
               
               Cow position:chr7:49844589-49845325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 54

               
               
               Conread position:148-834
               
               
               Cow position:chr7:55534228-55534968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 608

               
               
               Conread position:150-329
               
               
               Cow position:chr7:31349474-31349281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 9

               
               
               Conread position:150-387
               
               
               Cow position:chr7:24234504-24234247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 150

               
               
               Conread position:150-411
               
               
               Cow position:chr7:62193019-62192737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):73, 8

               
               
               Conread position:150-579
               
               
               Cow position:chr7:42593861-42594327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 8

               
               
               Conread position:150-623
               
               
               Cow position:chr7:29011157-29011655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 8

               
               
               Conread position:153-605
               
               
               Cow position:chr7:43238059-43238542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:316
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):72, 123

               
               
               Conread position:153-794
               
               
               Cow position:chr7:20779586-20778896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 282

               
               
               Conread position:153-825
               
               
               Cow position:chr7:64353657-64352925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 88

               
               
               Conread position:153-834
               
               
               Cow position:chr7:31446756-31447475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:441
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):6, 344

               
               
               Conread position:153-834
               
               
               Cow position:chr7:63379204-63379915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 63

               
               
               Conread position:154-645
               
               
               Cow position:chr7:48242881-48242352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 324

               
               
               Conread position:155-402
               
               
               Cow position:chr7:56080693-56080429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):70, 26

               
               
               Conread position:156-471
               
               
               Cow position:chr7:53381676-53381336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:244
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):5, 225

               
               
               Conread position:157-614
               
               
               Cow position:chr7:34548272-34547769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:340
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):65, 221

               
               
               Conread position:157-834
               
               
               Cow position:chr7:36096724-36096015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:458
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):59, 537

               
               
               Conread position:158-337
               
               
               Cow position:chr7:19043518-19043714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 104

               
               
               Conread position:158-361
               
               
               Cow position:chr7:61652855-61652630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:158-373
               
               
               Cow position:chr7:12010-12243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):64, 109

               
               
               Conread position:158-382
               
               
               Cow position:chr7:20119758-20120005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr7:27459347-27459101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr7:36507695-36507449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr7:49377134-49377380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr7:60462937-60463183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr7:62470014-62469768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-383
               
               
               Cow position:chr7:55486378-55486625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-387
               
               
               Cow position:chr7:15566219-15565976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):64, 128

               
               
               Conread position:158-387
               
               
               Cow position:chr7:34441911-34442143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):128, 29

               
               
               Conread position:158-387
               
               
               Cow position:chr7:65814805-65814555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:158-394
               
               
               Cow position:chr7:19456922-19457180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:158-408
               
               
               Cow position:chr7:35061431-35061160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-410
               
               
               Cow position:chr7:23445299-23445023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:158-410
               
               
               Cow position:chr7:33719426-33719143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):65, 229

               
               
               Conread position:158-410
               
               
               Cow position:chr7:58875535-58875265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:158-413
               
               
               Cow position:chr7:57577803-57578075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):59, 29

               
               
               Conread position:158-433
               
               
               Cow position:chr7:19178635-19178941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:158-452
               
               
               Cow position:chr7:27456136-27456457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):64, 22

               
               
               Conread position:158-453
               
               
               Cow position:chr7:12773588-12773261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr7:14098586-14098263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr7:33787126-33786804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):61, 314

               
               
               Conread position:158-454
               
               
               Cow position:chr7:19956936-19957264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-463
               
               
               Cow position:chr7:48394340-48394005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):64, 328

               
               
               Conread position:158-463
               
               
               Cow position:chr7:63771357-63771020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):64, 222

               
               
               Conread position:158-467
               
               
               Cow position:chr7:34431146-34431489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-503
               
               
               Cow position:chr7:63569891-63570267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-504
               
               
               Cow position:chr7:34425044-34424666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-504
               
               
               Cow position:chr7:41405078-41405459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-508
               
               
               Cow position:chr7:31912787-31913158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):64, 152

               
               
               Conread position:158-528
               
               
               Cow position:chr7:11440150-11440554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:283
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):64, 342

               
               
               Conread position:158-528
               
               
               Cow position:chr7:39850825-39850422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:272
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:158-539
               
               
               Cow position:chr7:54785146-54785548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):64, 39

               
               
               Conread position:158-540
               
               
               Cow position:chr7:3027480-3027875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:280
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):61, 247

               
               
               Conread position:158-540
               
               
               Cow position:chr7:24423319-24422900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:288
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):64, 329

               
               
               Conread position:158-579
               
               
               Cow position:chr7:40709429-40708968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:310
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):66, 109

               
               
               Conread position:158-580
               
               
               Cow position:chr7:7278237-7277769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:322
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr7:40203671-40203209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:312
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-643
               
               
               Cow position:chr7:35428107-35428629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 334

               
               
               Conread position:158-644
               
               
               Cow position:chr7:19398515-19399044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:356
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):67, 237

               
               
               Conread position:158-644
               
               
               Cow position:chr7:23554635-23554128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 53

               
               
               Conread position:158-645
               
               
               Cow position:chr7:33790939-33790408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:350
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):61, 314

               
               
               Conread position:158-645
               
               
               Cow position:chr7:58138404-58137872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:357
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):60, 380

               
               
               Conread position:158-692
               
               
               Cow position:chr7:38189285-38188702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 231

               
               
               Conread position:158-693
               
               
               Cow position:chr7:27516522-27515958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:366
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):64, 297

               
               
               Conread position:158-788
               
               
               Cow position:chr7:7249085-7249768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-798
               
               
               Cow position:chr7:64330342-64329665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 249

               
               
               Conread position:158-822
               
               
               Cow position:chr7:34083113-34082397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 581

               
               
               Conread position:158-825
               
               
               Cow position:chr7:7262194-7261483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 306

               
               
               Conread position:158-825
               
               
               Cow position:chr7:19949203-19949898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 481

               
               
               Conread position:158-825
               
               
               Cow position:chr7:21323942-21323223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-825
               
               
               Cow position:chr7:26838093-26837369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 423

               
               
               Conread position:158-825
               
               
               Cow position:chr7:64013106-64012386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 468

               
               
               Conread position:158-833
               
               
               Cow position:chr7:466900-467625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 105

               
               
               Conread position:158-834
               
               
               Cow position:chr7:845602-844873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr7:899575-900299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 381

               
               
               Conread position:158-834
               
               
               Cow position:chr7:981915-982641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 594

               
               
               Conread position:158-834
               
               
               Cow position:chr7:3296998-3297727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 344

               
               
               Conread position:158-834
               
               
               Cow position:chr7:3634078-3634795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 132

               
               
               Conread position:158-834
               
               
               Cow position:chr7:6628092-6628816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 345

               
               
               Conread position:158-834
               
               
               Cow position:chr7:11460457-11461185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 108

               
               
               Conread position:158-834
               
               
               Cow position:chr7:19096621-19097344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 587

               
               
               Conread position:158-834
               
               
               Cow position:chr7:22598696-22597967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr7:23141233-23140503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr7:25443448-25442727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 282

               
               
               Conread position:158-834
               
               
               Cow position:chr7:36343105-36343829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 592

               
               
               Conread position:158-834
               
               
               Cow position:chr7:37166524-37165814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 253

               
               
               Conread position:158-834
               
               
               Cow position:chr7:39325210-39324527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 40

               
               
               Conread position:158-834
               
               
               Cow position:chr7:41872659-41873344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 40

               
               
               Conread position:158-834
               
               
               Cow position:chr7:42873812-42873096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 116

               
               
               Conread position:158-834
               
               
               Cow position:chr7:46195591-46194864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 91

               
               
               Conread position:158-834
               
               
               Cow position:chr7:49602891-49603618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-834
               
               
               Cow position:chr7:61831814-61832540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 572

               
               
               Conread position:158-834
               
               
               Cow position:chr7:63022552-63021831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 145

               
               
               Conread position:158-834
               
               
               Cow position:chr7:65556738-65557466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 349

               
               
               Conread position:158-834
               
               
               Cow position:chr7:69018918-69018214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 40

               
               
               Conread position:159-436
               
               
               Cow position:chr7:21571979-21571676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:159-644
               
               
               Cow position:chr7:956335-955828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:338
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):66, 9

               
               
               Conread position:159-782
               
               
               Cow position:chr7:48722401-48723108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:159-825
               
               
               Cow position:chr7:114280-113577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 331

               
               
               Conread position:159-834
               
               
               Cow position:chr7:14211739-14212468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 349

               
               
               Conread position:160-337
               
               
               Cow position:chr7:11419707-11419896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 115

               
               
               Conread position:160-382
               
               
               Cow position:chr7:27397327-27397569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 13

               
               
               Conread position:160-410
               
               
               Cow position:chr7:55289903-55290177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):62, 80

               
               
               Conread position:160-456
               
               
               Cow position:chr7:14519041-14519369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:160-465
               
               
               Cow position:chr7:55809742-55809408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:160-481
               
               
               Cow position:chr7:57209164-57209519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:160-527
               
               
               Cow position:chr7:13805982-13806371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:272
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):62, 107

               
               
               Conread position:160-551
               
               
               Cow position:chr7:39130780-39131175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:285
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):64, 115

               
               
               Conread position:160-551
               
               
               Cow position:chr7:58302506-58302924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 130

               
               
               Conread position:160-616
               
               
               Cow position:chr7:27790952-27790471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:322
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):62, 207

               
               
               Conread position:160-626
               
               
               Cow position:chr7:28162751-28162240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:347
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:160-764
               
               
               Cow position:chr7:49647794-49647125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 107

               
               
               Conread position:160-808
               
               
               Cow position:chr7:61423849-61424556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:451
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):67, 390

               
               
               Conread position:160-815
               
               
               Cow position:chr7:51194368-51193679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 26

               
               
               Conread position:160-819
               
               
               Cow position:chr7:43394357-43395054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 247

               
               
               Conread position:160-823
               
               
               Cow position:chr7:54509530-54510246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 276

               
               
               Conread position:160-824
               
               
               Cow position:chr7:23130478-23129771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 486

               
               
               Conread position:160-824
               
               
               Cow position:chr7:63135509-63134813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 222

               
               
               Conread position:160-825
               
               
               Cow position:chr7:24741441-24742129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 307

               
               
               Conread position:160-825
               
               
               Cow position:chr7:29303109-29303816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 461

               
               
               Conread position:160-825
               
               
               Cow position:chr7:57911045-57910331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 582

               
               
               Conread position:160-834
               
               
               Cow position:chr7:45945192-45945903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 197

               
               
               Conread position:160-834
               
               
               Cow position:chr7:46266839-46266116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 14

               
               
               Conread position:160-834
               
               
               Cow position:chr7:48626373-48625703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 109

               
               
               Conread position:160-834
               
               
               Cow position:chr7:59558714-59559433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 116

               
               
               Conread position:161-437
               
               
               Cow position:chr7:10727404-10727710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:161-522
               
               
               Cow position:chr7:51872800-51873198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:274
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):60, 309

               
               
               Conread position:161-580
               
               
               Cow position:chr7:36128428-36127981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:296
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):68, 131

               
               
               Conread position:161-614
               
               
               Cow position:chr7:64103955-64104451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:341
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):63, 37

               
               
               Conread position:161-825
               
               
               Cow position:chr7:59774984-59774273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 344

               
               
               Conread position:161-834
               
               
               Cow position:chr7:26465432-26464750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:445
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):69, 249

               
               
               Conread position:161-834
               
               
               Cow position:chr7:38400506-38399803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 241

               
               
               Conread position:161-834
               
               
               Cow position:chr7:39094848-39095544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 9

               
               
               Conread position:161-834
               
               
               Cow position:chr7:50961750-50961033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 587

               
               
               Conread position:162-524
               
               
               Cow position:chr7:33962705-33963098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):18, 372

               
               
               Conread position:162-666
               
               
               Cow position:chr7:17950291-17949775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 123

               
               
               Conread position:162-828
               
               
               Cow position:chr7:66571377-66572067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:448
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:162-834
               
               
               Cow position:chr7:54822745-54823470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 591

               
               
               Conread position:163-768
               
               
               Cow position:chr7:18964361-18963724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 374

               
               
               Conread position:163-795
               
               
               Cow position:chr7:48860064-48860721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:432
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):98, 52

               
               
               Conread position:164-819
               
               
               Cow position:chr7:42296630-42297343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 132

               
               
               Conread position:164-831
               
               
               Cow position:chr7:61824404-61825093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 118

               
               
               Conread position:165-598
               
               
               Cow position:chr7:48011760-48011304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 131

               
               
               Conread position:165-824
               
               
               Cow position:chr7:18499329-18500020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:448
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):53, 84

               
               
               Conread position:166-410
               
               
               Cow position:chr7:20433644-20433373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:166-644
               
               
               Cow position:chr7:65496056-65496583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 364

               
               
               Conread position:167-825
               
               
               Cow position:chr7:58921801-58921118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 90

               
               
               Conread position:169-602
               
               
               Cow position:chr7:54480-54960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:319
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:169-831
               
               
               Cow position:chr7:57538394-57539095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 166

               
               
               Conread position:171-504
               
               
               Cow position:chr7:68446474-68446112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):51, 213

               
               
               Conread position:171-786
               
               
               Cow position:chr7:42839926-42839291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 27

               
               
               Conread position:171-828
               
               
               Cow position:chr7:19271926-19272599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:428
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 101

               
               
               Conread position:171-834
               
               
               Cow position:chr7:5250501-5251196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 516

               
               
               Conread position:174-551
               
               
               Cow position:chr7:24827492-24827076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:280
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:175-537
               
               
               Cow position:chr7:22879690-22879296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 77

               
               
               Conread position:176-469
               
               
               Cow position:chr7:68314598-68314281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):16, 151

               
               
               Conread position:176-825
               
               
               Cow position:chr7:60757559-60758233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 201

               
               
               Conread position:180-606
               
               
               Cow position:chr7:18871351-18871823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:321
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):42, 249

               
               
               Conread position:180-834
               
               
               Cow position:chr7:30306467-30305773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 189

               
               
               Conread position:183-645
               
               
               Cow position:chr7:54482623-54483123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:328
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:186-410
               
               
               Cow position:chr7:20082425-20082666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 75

               
               
               Conread position:186-818
               
               
               Cow position:chr7:33335101-33334418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 565

               
               
               Conread position:187-825
               
               
               Cow position:chr7:3389163-3388497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 463

               
               
               Conread position:189-513
               
               
               Cow position:chr7:66750403-66750750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 164

               
               
               Conread position:189-521
               
               
               Cow position:chr7:68575776-68575427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):36, 208

               
               
               Conread position:189-740
               
               
               Cow position:chr7:14081549-14082149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 556

               
               
               Conread position:189-782
               
               
               Cow position:chr7:46898727-46899361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 398

               
               
               Conread position:189-819
               
               
               Cow position:chr7:63389639-63388962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 310

               
               
               Conread position:190-824
               
               
               Cow position:chr7:29474077-29473406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 216

               
               
               Conread position:190-834
               
               
               Cow position:chr7:6667149-6666452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 561

               
               
               Conread position:201-551
               
               
               Cow position:chr7:37521113-37520728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:260
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):22, 59

               
               
               Conread position:201-612
               
               
               Cow position:chr7:53037640-53038086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):24, 389

               
               
               Conread position:201-834
               
               
               Cow position:chr7:998813-998144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 99

               
               
               Conread position:207-834
               
               
               Cow position:chr7:5304362-5305034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 504

               
               
               Conread position:214-825
               
               
               Cow position:chr7:53362589-53363235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 7

               
               
               Conread position:216-367
               
               
               Cow position:chr7:21567517-21567676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:221-522
               
               
               Cow position:chr7:33957376-33957042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):15, 164

               
               
               Conread position:221-633
               
               
               Cow position:chr7:26885046-26884618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:295
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):15, 31

               
               
               Conread position:221-693
               
               
               Cow position:chr7:43281881-43281361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 105

               
               
               Conread position:221-711
               
               
               Cow position:chr7:35743165-35742637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 236

               
               
               Conread position:221-803
               
               
               Cow position:chr7:31878078-31877464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 272

               
               
               Conread position:221-825
               
               
               Cow position:chr7:12302-12951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 45

               
               
               Conread position:221-834
               
               
               Cow position:chr7:69065865-69065218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 484

               
               
               Conread position:222-621
               
               
               Cow position:chr7:41444601-41444199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):168, 14

               
               
               Conread position:222-829
               
               
               Cow position:chr7:62991327-62990688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 310

               
               
               Conread position:222-834
               
               
               Cow position:chr7:26926570-26927224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 270

               
               
               Conread position:223-548
               
               
               Cow position:chr7:39902951-39902598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 275

               
               
               Conread position:227-774
               
               
               Cow position:chr7:29346357-29346917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 59

               
               
               Conread position:229-636
               
               
               Cow position:chr7:20225691-20226123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:271
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):61, 38

               
               
               Conread position:230-834
               
               
               Cow position:chr7:20829610-20828977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 89

               
               
               Conread position:234-540
               
               
               Cow position:chr7:19798866-19799202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:235-580
               
               
               Cow position:chr7:33064746-33065115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):54, 178

               
               
               Conread position:235-775
               
               
               Cow position:chr7:30415373-30414816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 282

               
               
               Conread position:235-825
               
               
               Cow position:chr7:67802922-67802290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 473

               
               
               Conread position:235-866
               
               
               Cow position:chr7:49826778-49827431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 19

               
               
               Conread position:236-815
               
               
               Cow position:chr7:57024491-57025093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 255

               
               
               Conread position:241-410
               
               
               Cow position:chr7:7175343-7175162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):51, 10

               
               
               Conread position:243-821
               
               
               Cow position:chr7:42431214-42430601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 230

               
               
               Conread position:243-824
               
               
               Cow position:chr7:54583025-54582419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 69

               
               
               Conread position:249-809
               
               
               Cow position:chr7:20938818-20938250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:351
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):88, 222

               
               
               Conread position:250-741
               
               
               Cow position:chr7:44455493-44456018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:260-815
               
               
               Cow position:chr7:67759779-67759205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:393
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):79, 50

               
               
               Conread position:262-534
               
               
               Cow position:chr7:61762645-61762357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:263-644
               
               
               Cow position:chr7:22792418-22792007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 47

               
               
               Conread position:267-834
               
               
               Cow position:chr7:27142554-27141937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:619
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 480

               
               
               Conread position:268-497
               
               
               Cow position:chr7:47876977-47877222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:269-825
               
               
               Cow position:chr7:58335473-58336065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 30

               
               
               Conread position:269-834
               
               
               Cow position:chr7:99023-99611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:391
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 154

               
               
               Conread position:277-833
               
               
               Cow position:chr7:55688437-55689024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 170

               
               
               Conread position:281-765
               
               
               Cow position:chr7:37418520-37418014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:328
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 179

               
               
               Conread position:281-782
               
               
               Cow position:chr7:26771070-26770556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 7

               
               
               Conread position:288-834
               
               
               Cow position:chr7:52801077-52801650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 9

               
               
               Conread position:289-825
               
               
               Cow position:chr7:48638222-48637679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:359
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):55, 75

               
               
               Conread position:289-828
               
               
               Cow position:chr7:39419604-39420157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:370
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):50, 190

               
               
               Conread position:290-540
               
               
               Cow position:chr7:38061172-38061432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):49, 206

               
               
               Conread position:290-742
               
               
               Cow position:chr7:56822191-56822675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:324
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):49, 437

               
               
               Conread position:290-806
               
               
               Cow position:chr7:65431380-65431924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 432

               
               
               Conread position:290-825
               
               
               Cow position:chr7:12483730-12483163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 177

               
               
               Conread position:290-834
               
               
               Cow position:chr7:59687513-59686953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 121

               
               
               Conread position:291-834
               
               
               Cow position:chr7:6625848-6626422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 195

               
               
               Conread position:291-834
               
               
               Cow position:chr7:48814648-48814071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 337

               
               
               Conread position:292-528
               
               
               Cow position:chr7:49107673-49107903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 112

               
               
               Conread position:292-834
               
               
               Cow position:chr7:50535758-50536335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 443

               
               
               Conread position:292-835
               
               
               Cow position:chr7:60741413-60741988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 314

               
               
               Conread position:293-521
               
               
               Cow position:chr7:51675459-51675218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):46, 230

               
               
               Conread position:295-828
               
               
               Cow position:chr7:62393988-62393443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:360
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):84, 38

               
               
               Conread position:295-834
               
               
               Cow position:chr7:1383268-1382711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 146

               
               
               Conread position:311-753
               
               
               Cow position:chr7:45100511-45100030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:330
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):28, 428

               
               
               Conread position:311-834
               
               
               Cow position:chr7:19926353-19926911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 46

               
               
               Conread position:312-815
               
               
               Cow position:chr7:259282-259784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 204

               
               
               Conread position:315-781
               
               
               Cow position:chr7:69115907-69115415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:314
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):24, 411

               
               
               Conread position:315-804
               
               
               Cow position:chr7:51406956-51406440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 118

               
               
               Conread position:315-819
               
               
               Cow position:chr7:32713116-32713642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 143

               
               
               Conread position:315-873
               
               
               Cow position:chr7:30022974-30023518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:369
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):24, 47

               
               
               Conread position:333-822
               
               
               Cow position:chr7:3128786-3128268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 9

               
               
               Conread position:336-699
               
               
               Cow position:chr7:59659976-59659579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):45, 143

               
               
               Conread position:336-708
               
               
               Cow position:chr7:30275476-30275086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 69

               
               
               Conread position:336-834
               
               
               Cow position:chr7:19043741-19044267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 12

               
               
               Conread position:336-834
               
               
               Cow position:chr7:27572723-27572199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 177

               
               
               Conread position:336-834
               
               
               Cow position:chr7:55041992-55041465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 303

               
               
               Conread position:339-634
               
               
               Cow position:chr7:52044919-52044608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):41, 120

               
               
               Conread position:340-825
               
               
               Cow position:chr7:57161257-57161771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 121

               
               
               Conread position:341-806
               
               
               Cow position:chr7:18444307-18444787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:333
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):48, 176

               
               
               Conread position:341-820
               
               
               Cow position:chr7:61462440-61462923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:328
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):47, 23

               
               
               Conread position:342-825
               
               
               Cow position:chr7:27098796-27099309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 389

               
               
               Conread position:342-834
               
               
               Cow position:chr7:29382384-29381861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 389

               
               
               Conread position:345-818
               
               
               Cow position:chr7:8741811-8742314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 119

               
               
               Conread position:345-834
               
               
               Cow position:chr7:14865723-14865225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:336
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):138, 44

               
               
               Conread position:355-774
               
               
               Cow position:chr7:20150267-20150717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 376

               
               
               Conread position:356-830
               
               
               Cow position:chr7:11420119-11420624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 378

               
               
               Conread position:368-527
               
               
               Cow position:chr7:19457180-19457345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:374-687
               
               
               Cow position:chr7:21568007-21568343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:248
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:374-807
               
               
               Cow position:chr7:54854779-54854341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:288
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):42, 86

               
               
               Conread position:374-825
               
               
               Cow position:chr7:5661270-5660819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 38

               
               
               Conread position:374-825
               
               
               Cow position:chr7:59244242-59243796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:312
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):56, 38

               
               
               Conread position:380-825
               
               
               Cow position:chr7:59141644-59141179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:314
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):36, 236

               
               
               Conread position:380-834
               
               
               Cow position:chr7:24955656-24955187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:320
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):37, 42

               
               
               Conread position:382-597
               
               
               Cow position:chr7:20167858-20167624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:421-834
               
               
               Cow position:chr7:31259571-31260006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr7:35919925-35920360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:421-834
               
               
               Cow position:chr7:62702259-62702694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:422-807
               
               
               Cow position:chr7:41747345-41747750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):7, 296

               
               
               Conread position:422-831
               
               
               Cow position:chr7:5207805-5207398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):65, 12

               
               
               Conread position:422-834
               
               
               Cow position:chr7:65814224-65813790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 300

               
               
               Conread position:423-813
               
               
               Cow position:chr7:20082702-20083113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 82

               
               
               Conread position:423-834
               
               
               Cow position:chr7:6723418-6722986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 298

               
               
               Conread position:427-717
               
               
               Cow position:chr7:12330749-12331057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 63

               
               
               Conread position:427-834
               
               
               Cow position:chr7:4128343-4127917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:285
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):19, 293

               
               
               Conread position:428-693
               
               
               Cow position:chr7:30115845-30116127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:428-823
               
               
               Cow position:chr7:24059881-24059470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:282
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):63, 173

               
               
               Conread position:429-819
               
               
               Cow position:chr7:42428967-42428567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):58, 77

               
               
               Conread position:430-808
               
               
               Cow position:chr7:31867648-31867254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):45, 186

               
               
               Conread position:431-834
               
               
               Cow position:chr7:49825718-49826139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 45

               
               
               Conread position:432-831
               
               
               Cow position:chr7:63954680-63955089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):23, 75

               
               
               Conread position:434-803
               
               
               Cow position:chr7:57578124-57578505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):55, 281

               
               
               Conread position:434-825
               
               
               Cow position:chr7:23817278-23816869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:438-820
               
               
               Cow position:chr7:33719078-33718672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 208

               
               
               Conread position:438-830
               
               
               Cow position:chr7:60466088-60465670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:288
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):38, 291

               
               
               Conread position:445-822
               
               
               Cow position:chr7:735392-735773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:259
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):79, 45

               
               
               Conread position:468-834
               
               
               Cow position:chr7:45954011-45953631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 15

               
               
               Conread position:490-818
               
               
               Cow position:chr7:21240446-21240789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:244
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):35, 222

               
               
               Conread position:490-834
               
               
               Cow position:chr7:40990586-40990250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 91

               
               
               Conread position:491-831
               
               
               Cow position:chr7:27722575-27722930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):33, 227

               
               
               Conread position:491-834
               
               
               Cow position:chr7:18864524-18864886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr7:42224480-42224842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 109

               
               
               Conread position:492-768
               
               
               Cow position:chr7:54546991-54547286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):33, 227

               
               
               Conread position:494-819
               
               
               Cow position:chr7:68445888-68445559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:242
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):36, 25

               
               
               Conread position:495-795
               
               
               Cow position:chr7:57185263-57185564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 59

               
               
               Conread position:497-825
               
               
               Cow position:chr7:45613179-45613514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:241
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:504-834
               
               
               Cow position:chr7:971443-971768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):69, 30

               
               
               Conread position:505-809
               
               
               Cow position:chr7:39552070-39552378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):10, 25

               
               
               Conread position:511-834
               
               
               Cow position:chr7:34668180-34667842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):13, 55

               
               
               Conread position:516-834
               
               
               Cow position:chr7:6799828-6800142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):57, 19

               
               
               Conread position:521-834
               
               
               Cow position:chr7:21317429-21317109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:529-808
               
               
               Cow position:chr7:39850130-39850414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):44, 22

               
               
               Conread position:542-815
               
               
               Cow position:chr7:27576537-27576810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):31, 164

               
               
               Conread position:545-803
               
               
               Cow position:chr7:28881558-28881287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):28, 162

               
               
               Conread position:545-830
               
               
               Cow position:chr7:266406-266119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 158

               
               
               Conread position:568-834
               
               
               Cow position:chr7:27457489-27457760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):80, 139

               
               
               Conread position:569-811
               
               
               Cow position:chr7:58303239-58303002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):79, 36

               
               
               Conread position:569-818
               
               
               Cow position:chr7:67431766-67431511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:569-823
               
               
               Cow position:chr7:49070752-49071011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):73, 133

               
               
               Conread position:569-825
               
               
               Cow position:chr7:1600807-1601068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):77, 136

               
               
               Conread position:569-825
               
               
               Cow position:chr7:50021478-50021736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):68, 133

               
               
               Conread position:569-834
               
               
               Cow position:chr7:40263130-40263397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):51, 102

               
               
               Conread position:579-814
               
               
               Cow position:chr7:27712507-27712269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):62, 92

               
               
               Conread position:585-834
               
               
               Cow position:chr7:6433781-6434035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):63, 8

               
               
               Conread position:586-834
               
               
               Cow position:chr7:24422554-24422305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):62, 122

               
               
               Conread position:591-782
               
               
               Cow position:chr7:31762081-31762276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):56, 106

               
               
               Conread position:591-834
               
               
               Cow position:chr7:7277609-7277361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-834
               
               
               Cow position:chr7:14135650-14135898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):55, 80

               
               
               Conread position:592-824
               
               
               Cow position:chr7:36127734-36127500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):55, 112

               
               
               Conread position:592-825
               
               
               Cow position:chr7:24720424-24720658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 107

               
               
               Conread position:592-834
               
               
               Cow position:chr7:39595570-39595811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):45, 114

               
               
               Conread position:592-834
               
               
               Cow position:chr7:42333441-42333201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:594-819
               
               
               Cow position:chr7:68087140-68086909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:594-829
               
               
               Cow position:chr7:52762461-52762691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:594-834
               
               
               Cow position:chr7:66298956-66299201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):53, 111

               
               
               Conread position:595-833
               
               
               Cow position:chr7:5436912-5437153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 91

               
               
               Conread position:597-834
               
               
               Cow position:chr7:42594370-42594610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):23, 16

               
               
               Conread position:601-831
               
               
               Cow position:chr7:20183886-20184115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:602-832
               
               
               Cow position:chr7:68263509-68263274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):7, 108

               
               
               Conread position:604-834
               
               
               Cow position:chr7:37023526-37023291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):18, 14

               
               
               Conread position:609-822
               
               
               Cow position:chr7:33281586-33281797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):39, 91

               
               
               Conread position:615-815
               
               
               Cow position:chr7:14538847-14538648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:621-834
               
               
               Cow position:chr7:33809698-33809481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):24, 80

               
               
               Conread position:625-834
               
               
               Cow position:chr7:19182176-19181965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):21, 77

               
               
               Conread position:626-834
               
               
               Cow position:chr7:61623525-61623743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):17, 76

               
               
               Conread position:638-825
               
               
               Cow position:chr7:65330503-65330684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 33

               
               
               Conread position:641-814
               
               
               Cow position:chr7:9076-8908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:641-825
               
               
               Cow position:chr7:51674878-51674692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 55

               
               
               Conread position:645-777
               
               
               Cow position:chr7:63924577-63924707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:645-811
               
               
               Cow position:chr7:5241506-5241672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:645-834
               
               
               Cow position:chr7:68235800-68235613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:650-834
               
               
               Cow position:chr7:10099660-10099840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:666-796
               
               
               Cow position:chr7:51840310-51840180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):16, 31

               
               
               Conread position:667-807
               
               
               Cow position:chr7:30043101-30042962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:667-815
               
               
               Cow position:chr7:18424951-18425098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:667-834
               
               
               Cow position:chr7:23463290-23463451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:667-834
               
               
               Cow position:chr7:62792261-62792095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:671-834
               
               
               Cow position:chr7:19763151-19762990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:675-808
               
               
               Cow position:chr7:51873485-51873616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:676-812
               
               
               Cow position:chr7:27741974-27742110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):99, 20

               
               
               Conread position:676-819
               
               
               Cow position:chr7:66224603-66224744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:692-806
               
               
               Cow position:chr7:5303748-5303863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:693-834
               
               
               Cow position:chr7:61138068-61138209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr7:38188416-38188280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:701-814
               
               
               Cow position:chr7:64358271-64358158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:701-834
               
               
               Cow position:chr7:30116156-30116291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):28, 9

               
               
               Conread position:702-825
               
               
               Cow position:chr7:955737-955614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:702-834
               
               
               Cow position:chr7:8141889-8142021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:712-834
               
               
               Cow position:chr7:26888739-26888861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:727-834
               
               
               Cow position:chr7:44456181-44456288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-538
               
               
               Cow position:chr8:42442796-42442188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:401
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):57, 121

               
               
               Conread position:54-814
               
               
               Cow position:chr8:50315587-50316386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:810
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 19

               
               
               Conread position:62-832
               
               
               Cow position:chr8:53838907-53838070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:840
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 45

               
               
               Conread position:71-467
               
               
               Cow position:chr8:36332681-36333125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:308
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):75, 36

               
               
               Conread position:73-380
               
               
               Cow position:chr8:12310743-12311086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-381
               
               
               Cow position:chr8:51856244-51855906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-382
               
               
               Cow position:chr8:26176803-26177138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):111, 34

               
               
               Conread position:73-382
               
               
               Cow position:chr8:49822509-49822857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-382
               
               
               Cow position:chr8:56728438-56728112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):150, 34

               
               
               Conread position:73-388
               
               
               Cow position:chr8:13921947-13921624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):152, 34

               
               
               Conread position:73-388
               
               
               Cow position:chr8:40888684-40889019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:73-398
               
               
               Cow position:chr8:10970358-10969991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-398
               
               
               Cow position:chr8:42786739-42787089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:73-407
               
               
               Cow position:chr8:11136181-11136546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:253
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:73-410
               
               
               Cow position:chr8:47752404-47752770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):26, 40

               
               
               Conread position:73-440
               
               
               Cow position:chr8:6853156-6852741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-453
               
               
               Cow position:chr8:30488937-30489361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:292
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):75, 38

               
               
               Conread position:73-453
               
               
               Cow position:chr8:38054412-38054007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:73-458
               
               
               Cow position:chr8:46743784-46744181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 40

               
               
               Conread position:73-522
               
               
               Cow position:chr8:21212305-21211847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:319
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):148, 31

               
               
               Conread position:73-540
               
               
               Cow position:chr8:8382356-8381843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:346
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):32, 40

               
               
               Conread position:73-549
               
               
               Cow position:chr8:44856450-44855953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:332
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):98, 34

               
               
               Conread position:73-616
               
               
               Cow position:chr8:6747627-6748194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:366
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-621
               
               
               Cow position:chr8:11117991-11118597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-633
               
               
               Cow position:chr8:25535094-25534480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:408
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-712
               
               
               Cow position:chr8:26195712-26196413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:450
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:73-734
               
               
               Cow position:chr8:53451012-53450290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 39

               
               
               Conread position:73-767
               
               
               Cow position:chr8:46799795-46800542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:758
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 40

               
               
               Conread position:73-825
               
               
               Cow position:chr8:21219670-21218881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:810
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 40

               
               
               Conread position:73-825
               
               
               Cow position:chr8:25672255-25671443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:824
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-825
               
               
               Cow position:chr8:35473259-35472447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:817
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 22

               
               
               Conread position:73-825
               
               
               Cow position:chr8:46951619-46950823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:807
               
               
               Alignm identity:544
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 34

               
               
               Conread position:73-825
               
               
               Cow position:chr8:47466426-47467236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:816
               
               
               Alignm identity:536
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 115

               
               
               Conread position:73-829
               
               
               Cow position:chr8:35211651-35212460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:815
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 35

               
               
               Conread position:73-829
               
               
               Cow position:chr8:38561495-38562296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:818
               
               
               Alignm identity:545
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-831
               
               
               Cow position:chr8:24868258-24869067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:823
               
               
               Alignm identity:588
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 39

               
               
               Conread position:73-834
               
               
               Cow position:chr8:1469100-1468262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:841
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 28

               
               
               Conread position:73-834
               
               
               Cow position:chr8:7426953-7427766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:826
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:73-834
               
               
               Cow position:chr8:10739609-10740439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:834
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:73-834
               
               
               Cow position:chr8:27956013-27956800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:811
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 31

               
               
               Conread position:74-294
               
               
               Cow position:chr8:27950637-27950406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 30

               
               
               Conread position:74-456
               
               
               Cow position:chr8:50957812-50958240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:297
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):25, 39

               
               
               Conread position:96-834
               
               
               Cow position:chr8:38043205-38043995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:795
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 26

               
               
               Conread position:122-382
               
               
               Cow position:chr8:48767197-48766914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 93

               
               
               Conread position:122-455
               
               
               Cow position:chr8:42607799-42608165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:122-558
               
               
               Cow position:chr8:4310265-4309796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:314
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):18, 363

               
               
               Conread position:122-819
               
               
               Cow position:chr8:46655478-46654758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 295

               
               
               Conread position:122-834
               
               
               Cow position:chr8:5020903-5020142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:764
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 126

               
               
               Conread position:123-472
               
               
               Cow position:chr8:18576533-18576902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):32, 139

               
               
               Conread position:133-834
               
               
               Cow position:chr8:15224674-15223940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 163

               
               
               Conread position:139-445
               
               
               Cow position:chr8:36854242-36854555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 203

               
               
               Conread position:139-616
               
               
               Cow position:chr8:19546228-19545703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 165

               
               
               Conread position:139-834
               
               
               Cow position:chr8:45791852-45792584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 255

               
               
               Conread position:142-398
               
               
               Cow position:chr8:27287552-27287833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 18

               
               
               Conread position:142-436
               
               
               Cow position:chr8:7607747-7608064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:142-453
               
               
               Cow position:chr8:46953557-46953215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):77, 17

               
               
               Conread position:142-644
               
               
               Cow position:chr8:3332782-3333330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:368
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:142-811
               
               
               Cow position:chr8:51702437-51701729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:142-825
               
               
               Cow position:chr8:8524697-8523965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:142-825
               
               
               Cow position:chr8:50430264-50430996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:142-834
               
               
               Cow position:chr8:33592239-33591496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:143-284
               
               
               Cow position:chr8:26599708-26599559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):82, 15

               
               
               Conread position:143-302
               
               
               Cow position:chr8:19718959-19719128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-373
               
               
               Cow position:chr8:476676-476425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr8:38402239-38401979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr8:44017083-44016824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr8:47219372-47219112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chr8:55444571-55444831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr8:60800590-60800850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-398
               
               
               Cow position:chr8:55714998-55714725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:143-410
               
               
               Cow position:chr8:19302106-19301816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-410
               
               
               Cow position:chr8:50762272-50761979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-441
               
               
               Cow position:chr8:46625626-46625297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-450
               
               
               Cow position:chr8:12814267-12813932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-451
               
               
               Cow position:chr8:16961924-16962262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-453
               
               
               Cow position:chr8:1508455-1508796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr8:7050970-7051311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr8:25065799-25065458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-456
               
               
               Cow position:chr8:27152553-27152892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 55

               
               
               Conread position:143-457
               
               
               Cow position:chr8:46843437-46843782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-465
               
               
               Cow position:chr8:57055742-57056087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 13

               
               
               Conread position:143-466
               
               
               Cow position:chr8:29027194-29027532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-475
               
               
               Cow position:chr8:1810995-1811355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-480
               
               
               Cow position:chr8:15570009-15570364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-516
               
               
               Cow position:chr8:43109541-43109941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-524
               
               
               Cow position:chr8:47751268-47751679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:286
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-528
               
               
               Cow position:chr8:49964044-49964463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-540
               
               
               Cow position:chr8:50799944-50800378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:297
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-551
               
               
               Cow position:chr8:11241190-11240745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:305
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-579
               
               
               Cow position:chr8:45151780-45152256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-580
               
               
               Cow position:chr8:18207799-18208239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:313
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):89, 69

               
               
               Conread position:143-593
               
               
               Cow position:chr8:50948726-50949228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:351
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-603
               
               
               Cow position:chr8:51446280-51446785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:340
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-623
               
               
               Cow position:chr8:44113940-44113431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:348
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-624
               
               
               Cow position:chr8:53320393-53319875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:343
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):67, 13

               
               
               Conread position:143-635
               
               
               Cow position:chr8:25614151-25613612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:364
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-643
               
               
               Cow position:chr8:18057158-18056613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:143-645
               
               
               Cow position:chr8:6464270-6464821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:371
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-645
               
               
               Cow position:chr8:33045124-33045673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:368
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-669
               
               
               Cow position:chr8:60769524-60770094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-679
               
               
               Cow position:chr8:26039492-26038909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-718
               
               
               Cow position:chr8:53252271-53252874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-801
               
               
               Cow position:chr8:45130856-45131547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:143-818
               
               
               Cow position:chr8:2166646-2167372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:143-822
               
               
               Cow position:chr8:33898042-33898770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-825
               
               
               Cow position:chr8:1322899-1322164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-825
               
               
               Cow position:chr8:51019280-51020014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-831
               
               
               Cow position:chr8:45141589-45142284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr8:4690276-4689536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr8:8016193-8016936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr8:8227529-8228266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:143-834
               
               
               Cow position:chr8:8514199-8514941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr8:19334467-19333712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr8:22531348-22532089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr8:50283339-50284082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr8:51675026-51674285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:144-410
               
               
               Cow position:chr8:55090205-55089931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):73, 12

               
               
               Conread position:144-443
               
               
               Cow position:chr8:33993592-33993269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:144-451
               
               
               Cow position:chr8:741621-741948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):81, 11

               
               
               Conread position:144-692
               
               
               Cow position:chr8:1500074-1500674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:396
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-692
               
               
               Cow position:chr8:3957056-3956456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-789
               
               
               Cow position:chr8:47995843-47996524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 8

               
               
               Conread position:144-808
               
               
               Cow position:chr8:6438725-6439418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-811
               
               
               Cow position:chr8:61098625-61099309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-825
               
               
               Cow position:chr8:12445520-12446251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:144-825
               
               
               Cow position:chr8:32314753-32315483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:145-397
               
               
               Cow position:chr8:217824-217544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:145-403
               
               
               Cow position:chr8:45824300-45824026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):87, 11

               
               
               Conread position:145-410
               
               
               Cow position:chr8:8097554-8097844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-433
               
               
               Cow position:chr8:25627775-25627459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-453
               
               
               Cow position:chr8:45245960-45246293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-458
               
               
               Cow position:chr8:45492019-45491685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-528
               
               
               Cow position:chr8:48955333-48954941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:279
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:145-548
               
               
               Cow position:chr8:9237336-9237745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):196, 11

               
               
               Conread position:145-632
               
               
               Cow position:chr8:6077111-6077610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 11

               
               
               Conread position:145-825
               
               
               Cow position:chr8:11836386-11835677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:145-825
               
               
               Cow position:chr8:36632574-36633289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-825
               
               
               Cow position:chr8:38573798-38574516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:145-834
               
               
               Cow position:chr8:4727753-4728491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-834
               
               
               Cow position:chr8:45070800-45070066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:146-807
               
               
               Cow position:chr8:9995324-9994624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 14

               
               
               Conread position:146-824
               
               
               Cow position:chr8:30418498-30417763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 294

               
               
               Conread position:146-834
               
               
               Cow position:chr8:26394501-26393764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 128

               
               
               Conread position:147-304
               
               
               Cow position:chr8:16032413-16032581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-335
               
               
               Cow position:chr8:30135059-30134854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-382
               
               
               Cow position:chr8:580821-581068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-387
               
               
               Cow position:chr8:29416921-29417182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-410
               
               
               Cow position:chr8:20569984-20569694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-441
               
               
               Cow position:chr8:21989977-21989650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-453
               
               
               Cow position:chr8:7682151-7682490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):12, 62

               
               
               Conread position:147-461
               
               
               Cow position:chr8:37122376-37122031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):12, 105

               
               
               Conread position:147-467
               
               
               Cow position:chr8:17315467-17315118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:147-467
               
               
               Cow position:chr8:38394318-38393969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:147-467
               
               
               Cow position:chr8:46480437-46480803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-472
               
               
               Cow position:chr8:22145377-22145025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):12, 122

               
               
               Conread position:147-528
               
               
               Cow position:chr8:9131531-9131942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:276
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):12, 330

               
               
               Conread position:147-579
               
               
               Cow position:chr8:42117227-42116762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:330
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 328

               
               
               Conread position:147-585
               
               
               Cow position:chr8:7101492-7101936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:309
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):12, 144

               
               
               Conread position:147-623
               
               
               Cow position:chr8:41650609-41650084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:348
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):12, 333

               
               
               Conread position:147-644
               
               
               Cow position:chr8:61197392-61197940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-683
               
               
               Cow position:chr8:42748922-42748333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 42

               
               
               Conread position:147-760
               
               
               Cow position:chr8:18568032-18568684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:147-761
               
               
               Cow position:chr8:41641370-41642027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 385

               
               
               Conread position:147-775
               
               
               Cow position:chr8:22030987-22030308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 605

               
               
               Conread position:147-782
               
               
               Cow position:chr8:7167839-7167147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 578

               
               
               Conread position:147-795
               
               
               Cow position:chr8:12795263-12794576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:147-808
               
               
               Cow position:chr8:22103960-22104680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:455
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):12, 48

               
               
               Conread position:147-815
               
               
               Cow position:chr8:53886248-53885548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 35

               
               
               Conread position:147-825
               
               
               Cow position:chr8:25772767-25773492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 572

               
               
               Conread position:147-825
               
               
               Cow position:chr8:26625293-26624558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 607

               
               
               Conread position:147-834
               
               
               Cow position:chr8:12779416-12780098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 140

               
               
               Conread position:147-834
               
               
               Cow position:chr8:14588000-14588736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 604

               
               
               Conread position:147-834
               
               
               Cow position:chr8:19053160-19052427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 354

               
               
               Conread position:147-834
               
               
               Cow position:chr8:29920087-29920817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 119

               
               
               Conread position:147-834
               
               
               Cow position:chr8:38089836-38089109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 61

               
               
               Conread position:147-834
               
               
               Cow position:chr8:51603007-51603748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 131

               
               
               Conread position:147-837
               
               
               Cow position:chr8:49284195-49284931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 444

               
               
               Conread position:148-398
               
               
               Cow position:chr8:39072982-39073239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):11, 51

               
               
               Conread position:148-621
               
               
               Cow position:chr8:3853020-3853534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:339
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):11, 352

               
               
               Conread position:148-644
               
               
               Cow position:chr8:35529547-35529010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-811
               
               
               Cow position:chr8:21728613-21727929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:148-834
               
               
               Cow position:chr8:39192034-39192771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 606

               
               
               Conread position:148-834
               
               
               Cow position:chr8:60067753-60067016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 249

               
               
               Conread position:148-841
               
               
               Cow position:chr8:59258118-59258873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 53

               
               
               Conread position:150-616
               
               
               Cow position:chr8:33585606-33585104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:325
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:150-807
               
               
               Cow position:chr8:49620309-49619603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 9

               
               
               Conread position:150-832
               
               
               Cow position:chr8:18080828-18080108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:547
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 8

               
               
               Conread position:150-834
               
               
               Cow position:chr8:20674717-20675426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 63

               
               
               Conread position:150-834
               
               
               Cow position:chr8:47666698-47667427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 8

               
               
               Conread position:153-380
               
               
               Cow position:chr8:55026378-55026140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):6, 46

               
               
               Conread position:153-480
               
               
               Cow position:chr8:25498166-25497810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):6, 173

               
               
               Conread position:153-628
               
               
               Cow position:chr8:2748835-2748332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:328
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:155-520
               
               
               Cow position:chr8:28884214-28883829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):70, 141

               
               
               Conread position:158-293
               
               
               Cow position:chr8:22118384-22118239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-381
               
               
               Cow position:chr8:50817720-50817475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr8:18296407-18296653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr8:26590964-26591210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr8:45340036-45339797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:158-385
               
               
               Cow position:chr8:58034499-58034740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:158-402
               
               
               Cow position:chr8:9169392-9169665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:158-410
               
               
               Cow position:chr8:16302940-16302659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-410
               
               
               Cow position:chr8:46624629-46624901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):67, 23

               
               
               Conread position:158-410
               
               
               Cow position:chr8:47678856-47678579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-412
               
               
               Cow position:chr8:39321577-39321848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 250

               
               
               Conread position:158-441
               
               
               Cow position:chr8:12247350-12247665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr8:6588169-6588496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr8:16732745-16733068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr8:17434566-17434239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr8:31735791-31735464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr8:36665282-36665608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):64, 109

               
               
               Conread position:158-453
               
               
               Cow position:chr8:51219741-51219415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):64, 215

               
               
               Conread position:158-453
               
               
               Cow position:chr8:53120273-53120600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-461
               
               
               Cow position:chr8:59657211-59657549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:158-464
               
               
               Cow position:chr8:36858734-36859078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:158-467
               
               
               Cow position:chr8:35291363-35291704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-511
               
               
               Cow position:chr8:8666961-8667344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):64, 99

               
               
               Conread position:158-516
               
               
               Cow position:chr8:28880263-28879872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:272
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):66, 43

               
               
               Conread position:158-540
               
               
               Cow position:chr8:1111322-1110905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:279
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:158-540
               
               
               Cow position:chr8:32607519-32607939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:284
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-540
               
               
               Cow position:chr8:51882192-51882608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:274
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):64, 102

               
               
               Conread position:158-551
               
               
               Cow position:chr8:795343-795769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):64, 50

               
               
               Conread position:158-579
               
               
               Cow position:chr8:21043458-21042992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:315
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr8:4614766-4615232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:310
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr8:24193398-24192937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:311
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr8:28230058-28230525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:158-614
               
               
               Cow position:chr8:54015680-54015176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:339
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-619
               
               
               Cow position:chr8:32966985-32966460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-630
               
               
               Cow position:chr8:27551817-27552338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 329

               
               
               Conread position:158-636
               
               
               Cow position:chr8:13931076-13931598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:355
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):65, 172

               
               
               Conread position:158-691
               
               
               Cow position:chr8:17489152-17489716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 249

               
               
               Conread position:158-692
               
               
               Cow position:chr8:26607343-26606758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:384
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):64, 328

               
               
               Conread position:158-748
               
               
               Cow position:chr8:5195977-5195334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 589

               
               
               Conread position:158-766
               
               
               Cow position:chr8:8652491-8653152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-766
               
               
               Cow position:chr8:24724660-24723999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-788
               
               
               Cow position:chr8:20672776-20673462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 285

               
               
               Conread position:158-795
               
               
               Cow position:chr8:38596810-38597465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 124

               
               
               Conread position:158-796
               
               
               Cow position:chr8:14302539-14301871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 58

               
               
               Conread position:158-813
               
               
               Cow position:chr8:18656871-18657573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 381

               
               
               Conread position:158-819
               
               
               Cow position:chr8:39739825-39740531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 589

               
               
               Conread position:158-820
               
               
               Cow position:chr8:1107793-1108479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 97

               
               
               Conread position:158-822
               
               
               Cow position:chr8:817341-816632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 587

               
               
               Conread position:158-825
               
               
               Cow position:chr8:1583336-1582637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 119

               
               
               Conread position:158-825
               
               
               Cow position:chr8:15410894-15410171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:470
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):66, 296

               
               
               Conread position:158-825
               
               
               Cow position:chr8:21090466-21091186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 276

               
               
               Conread position:158-825
               
               
               Cow position:chr8:21152454-21153152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:158-825
               
               
               Cow position:chr8:26879403-26878686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 344

               
               
               Conread position:158-829
               
               
               Cow position:chr8:29918130-29918830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 35

               
               
               Conread position:158-829
               
               
               Cow position:chr8:39141509-39140786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-831
               
               
               Cow position:chr8:51696627-51697313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 44

               
               
               Conread position:158-833
               
               
               Cow position:chr8:13373953-13373263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 37

               
               
               Conread position:158-834
               
               
               Cow position:chr8:46019-45291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-834
               
               
               Cow position:chr8:1345108-1345827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 264

               
               
               Conread position:158-834
               
               
               Cow position:chr8:1999040-1998308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 53

               
               
               Conread position:158-834
               
               
               Cow position:chr8:10752213-10751484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 592

               
               
               Conread position:158-834
               
               
               Cow position:chr8:12077944-12078673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 335

               
               
               Conread position:158-834
               
               
               Cow position:chr8:16194983-16194255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 586

               
               
               Conread position:158-834
               
               
               Cow position:chr8:22376324-22377053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 597

               
               
               Conread position:158-834
               
               
               Cow position:chr8:22568430-22569159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 276

               
               
               Conread position:158-834
               
               
               Cow position:chr8:30158546-30157818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-834
               
               
               Cow position:chr8:31253229-31252488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 606

               
               
               Conread position:158-834
               
               
               Cow position:chr8:32042653-32041925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 275

               
               
               Conread position:158-834
               
               
               Cow position:chr8:35127934-35128658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 502

               
               
               Conread position:158-834
               
               
               Cow position:chr8:40584933-40584204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 335

               
               
               Conread position:158-834
               
               
               Cow position:chr8:41658946-41659674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 704

               
               
               Conread position:158-834
               
               
               Cow position:chr8:42317404-42318132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 594

               
               
               Conread position:158-834
               
               
               Cow position:chr8:55270664-55271392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:158-834
               
               
               Cow position:chr8:60064961-60064238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 307

               
               
               Conread position:159-382
               
               
               Cow position:chr8:44501046-44501291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:159-410
               
               
               Cow position:chr8:34253402-34253124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:159-465
               
               
               Cow position:chr8:225994-226317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):62, 112

               
               
               Conread position:159-764
               
               
               Cow position:chr8:1936173-1935529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 310

               
               
               Conread position:160-382
               
               
               Cow position:chr8:30440632-30440869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:160-382
               
               
               Cow position:chr8:47657052-47657296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):62, 241

               
               
               Conread position:160-402
               
               
               Cow position:chr8:50745833-50746093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):59, 238

               
               
               Conread position:160-410
               
               
               Cow position:chr8:32987317-32987584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):62, 9

               
               
               Conread position:160-453
               
               
               Cow position:chr8:24912184-24912508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):63, 102

               
               
               Conread position:160-453
               
               
               Cow position:chr8:29012063-29011739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:160-458
               
               
               Cow position:chr8:46202679-46202355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):62, 159

               
               
               Conread position:160-480
               
               
               Cow position:chr8:38249085-38249433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):64, 15

               
               
               Conread position:160-525
               
               
               Cow position:chr8:15687198-15687584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:263
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):76, 125

               
               
               Conread position:160-528
               
               
               Cow position:chr8:9963190-9963595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):65, 379

               
               
               Conread position:160-528
               
               
               Cow position:chr8:54069859-54069476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):60, 81

               
               
               Conread position:160-570
               
               
               Cow position:chr8:36686337-36685894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:293
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):58, 109

               
               
               Conread position:160-579
               
               
               Cow position:chr8:615623-616054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:295
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):124, 38

               
               
               Conread position:160-579
               
               
               Cow position:chr8:47065740-47066204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:320
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-583
               
               
               Cow position:chr8:54479385-54478918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:316
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-604
               
               
               Cow position:chr8:24889667-24889202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:310
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):61, 218

               
               
               Conread position:160-631
               
               
               Cow position:chr8:19194516-19194025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:334
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):63, 154

               
               
               Conread position:160-815
               
               
               Cow position:chr8:41951030-41950337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 234

               
               
               Conread position:160-822
               
               
               Cow position:chr8:8914584-8913872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 270

               
               
               Conread position:160-822
               
               
               Cow position:chr8:50927242-50927956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 234

               
               
               Conread position:160-824
               
               
               Cow position:chr8:14933290-14933985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 266

               
               
               Conread position:160-825
               
               
               Cow position:chr8:12661328-12662028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 178

               
               
               Conread position:160-834
               
               
               Cow position:chr8:11226379-11227111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:471
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):63, 490

               
               
               Conread position:160-834
               
               
               Cow position:chr8:13831074-13831799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 114

               
               
               Conread position:160-834
               
               
               Cow position:chr8:14925023-14925750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 321

               
               
               Conread position:160-834
               
               
               Cow position:chr8:46961882-46961143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 333

               
               
               Conread position:160-834
               
               
               Cow position:chr8:60267230-60266524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 355

               
               
               Conread position:161-446
               
               
               Cow position:chr8:47463397-47463080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:161-472
               
               
               Cow position:chr8:54302386-54302054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):61, 125

               
               
               Conread position:161-503
               
               
               Cow position:chr8:46645060-46645435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:161-594
               
               
               Cow position:chr8:983125-982642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:161-597
               
               
               Cow position:chr8:2823301-2823779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:329
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):58, 114

               
               
               Conread position:161-614
               
               
               Cow position:chr8:28205269-28204778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:353
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 13

               
               
               Conread position:161-815
               
               
               Cow position:chr8:27561322-27561997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 125

               
               
               Conread position:161-824
               
               
               Cow position:chr8:17200156-17200865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 207

               
               
               Conread position:161-834
               
               
               Cow position:chr8:14258937-14258222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 251

               
               
               Conread position:161-834
               
               
               Cow position:chr8:33855678-33854970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:470
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):64, 40

               
               
               Conread position:162-398
               
               
               Cow position:chr8:25571139-25570881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:162-834
               
               
               Cow position:chr8:53004048-53004756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 63

               
               
               Conread position:163-468
               
               
               Cow position:chr8:32000698-32001024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):56, 115

               
               
               Conread position:164-801
               
               
               Cow position:chr8:9671324-9670613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:459
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):58, 5

               
               
               Conread position:164-834
               
               
               Cow position:chr8:9739380-9738657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 329

               
               
               Conread position:165-387
               
               
               Cow position:chr8:47868836-47869073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:165-451
               
               
               Cow position:chr8:54156532-54156222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:165-800
               
               
               Cow position:chr8:47676686-47675999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 268

               
               
               Conread position:165-832
               
               
               Cow position:chr8:27535042-27535725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:437
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):51, 72

               
               
               Conread position:170-834
               
               
               Cow position:chr8:34400368-34399681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 80

               
               
               Conread position:173-825
               
               
               Cow position:chr8:49720504-49719816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:178-834
               
               
               Cow position:chr8:11372822-11373522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 109

               
               
               Conread position:182-821
               
               
               Cow position:chr8:29030866-29031523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 36

               
               
               Conread position:187-830
               
               
               Cow position:chr8:31976570-31977266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 567

               
               
               Conread position:187-839
               
               
               Cow position:chr8:6061647-6062346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 561

               
               
               Conread position:188-522
               
               
               Cow position:chr8:18991468-18991831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:259
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):36, 309

               
               
               Conread position:189-382
               
               
               Cow position:chr8:12452910-12452698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):31, 86

               
               
               Conread position:189-467
               
               
               Cow position:chr8:23774729-23774419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):34, 232

               
               
               Conread position:189-522
               
               
               Cow position:chr8:8821060-8820704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 221

               
               
               Conread position:189-711
               
               
               Cow position:chr8:8387368-8386801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 84

               
               
               Conread position:189-795
               
               
               Cow position:chr8:43477370-43476742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 363

               
               
               Conread position:189-825
               
               
               Cow position:chr8:51061308-51061998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 544

               
               
               Conread position:189-834
               
               
               Cow position:chr8:30483416-30484105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 203

               
               
               Conread position:189-834
               
               
               Cow position:chr8:49416077-49415390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 198

               
               
               Conread position:190-825
               
               
               Cow position:chr8:16940142-16940825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 210

               
               
               Conread position:191-630
               
               
               Cow position:chr8:24372613-24373096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 245

               
               
               Conread position:201-627
               
               
               Cow position:chr8:49600516-49600973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 86

               
               
               Conread position:201-763
               
               
               Cow position:chr8:46106218-46105623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:385
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):23, 210

               
               
               Conread position:203-786
               
               
               Cow position:chr8:35183318-35182714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:376
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):35, 81

               
               
               Conread position:205-540
               
               
               Cow position:chr8:2889504-2889143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:216-834
               
               
               Cow position:chr8:24904638-24903992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 218

               
               
               Conread position:221-632
               
               
               Cow position:chr8:21789035-21789486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:309
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:221-781
               
               
               Cow position:chr8:26014058-26013461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 482

               
               
               Conread position:221-834
               
               
               Cow position:chr8:3788210-3787558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 20

               
               
               Conread position:221-834
               
               
               Cow position:chr8:15864512-15865167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 280

               
               
               Conread position:221-834
               
               
               Cow position:chr8:21253032-21252377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 155

               
               
               Conread position:222-824
               
               
               Cow position:chr8:12057357-12056701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 516

               
               
               Conread position:223-468
               
               
               Cow position:chr8:820840-821103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):13, 126

               
               
               Conread position:227-834
               
               
               Cow position:chr8:4923684-4923040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 132

               
               
               Conread position:228-828
               
               
               Cow position:chr8:16758066-16758673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:397
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):62, 75

               
               
               Conread position:235-468
               
               
               Cow position:chr8:45690834-45691080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:235-644
               
               
               Cow position:chr8:8391686-8392124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 152

               
               
               Conread position:235-822
               
               
               Cow position:chr8:9688098-9687471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 471

               
               
               Conread position:235-834
               
               
               Cow position:chr8:8469052-8468415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 470

               
               
               Conread position:235-834
               
               
               Cow position:chr8:32628237-32628874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 264

               
               
               Conread position:239-817
               
               
               Cow position:chr8:39165638-39166237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 57

               
               
               Conread position:241-793
               
               
               Cow position:chr8:8224601-8225178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:376
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):35, 170

               
               
               Conread position:243-476
               
               
               Cow position:chr8:60744853-60745097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):31, 15

               
               
               Conread position:243-644
               
               
               Cow position:chr8:49220950-49220517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):47, 182

               
               
               Conread position:243-747
               
               
               Cow position:chr8:36957186-36957706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:334
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):101, 276

               
               
               Conread position:243-834
               
               
               Cow position:chr8:18402551-18403189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 234

               
               
               Conread position:243-834
               
               
               Cow position:chr8:19893787-19893153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 500

               
               
               Conread position:243-883
               
               
               Cow position:chr8:13322409-13323098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 183

               
               
               Conread position:252-768
               
               
               Cow position:chr8:7105154-7105692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:342
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):93, 159

               
               
               Conread position:253-548
               
               
               Cow position:chr8:31886226-31885916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):91, 29

               
               
               Conread position:255-542
               
               
               Cow position:chr8:38710556-38710867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):25, 119

               
               
               Conread position:256-767
               
               
               Cow position:chr8:43858771-43859315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:350
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:257-812
               
               
               Cow position:chr8:12806497-12805926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 64

               
               
               Conread position:260-540
               
               
               Cow position:chr8:42009695-42009387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):32, 230

               
               
               Conread position:261-713
               
               
               Cow position:chr8:48514403-48514874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:309
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):31, 251

               
               
               Conread position:261-831
               
               
               Cow position:chr8:11781679-11781075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 255

               
               
               Conread position:262-825
               
               
               Cow position:chr8:32303679-32303130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:358
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):42, 136

               
               
               Conread position:267-555
               
               
               Cow position:chr8:17912686-17912984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):72, 30

               
               
               Conread position:269-814
               
               
               Cow position:chr8:33692699-33692132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:365
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):69, 197

               
               
               Conread position:270-824
               
               
               Cow position:chr8:46480592-46481139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:372
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):69, 123

               
               
               Conread position:271-824
               
               
               Cow position:chr8:1115537-1116117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 188

               
               
               Conread position:274-815
               
               
               Cow position:chr8:46058044-46058608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 14

               
               
               Conread position:277-693
               
               
               Cow position:chr8:18683710-18684142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):64, 136

               
               
               Conread position:277-825
               
               
               Cow position:chr8:43902892-43902310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:386
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):60, 207

               
               
               Conread position:288-548
               
               
               Cow position:chr8:17268147-17268417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):54, 105

               
               
               Conread position:290-815
               
               
               Cow position:chr8:21118066-21118619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 123

               
               
               Conread position:290-831
               
               
               Cow position:chr8:8135667-8136224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 117

               
               
               Conread position:291-530
               
               
               Cow position:chr8:42159341-42159084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:291-772
               
               
               Cow position:chr8:25342900-25342395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 51

               
               
               Conread position:291-819
               
               
               Cow position:chr8:11805490-11804932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 84

               
               
               Conread position:291-825
               
               
               Cow position:chr8:1150583-1151145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 436

               
               
               Conread position:291-831
               
               
               Cow position:chr8:8010106-8009529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 445

               
               
               Conread position:291-834
               
               
               Cow position:chr8:50682644-50683219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 441

               
               
               Conread position:292-634
               
               
               Cow position:chr8:1598010-1598367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):49, 124

               
               
               Conread position:292-636
               
               
               Cow position:chr8:27368073-27367709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):49, 64

               
               
               Conread position:292-773
               
               
               Cow position:chr8:5243731-5244244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 311

               
               
               Conread position:293-556
               
               
               Cow position:chr8:24231153-24230879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:310-815
               
               
               Cow position:chr8:4298404-4297872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:352
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):12, 160

               
               
               Conread position:311-825
               
               
               Cow position:chr8:12287629-12287080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 335

               
               
               Conread position:311-834
               
               
               Cow position:chr8:8974630-8975175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:365
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):28, 46

               
               
               Conread position:312-830
               
               
               Cow position:chr8:6202595-6203145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 423

               
               
               Conread position:336-834
               
               
               Cow position:chr8:27942505-27943034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 395

               
               
               Conread position:336-834
               
               
               Cow position:chr8:37933976-37933450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 394

               
               
               Conread position:338-834
               
               
               Cow position:chr8:4273932-4273406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:341-782
               
               
               Cow position:chr8:8319498-8319037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:301
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):28, 326

               
               
               Conread position:341-796
               
               
               Cow position:chr8:45688183-45688662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:325
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):48, 124

               
               
               Conread position:341-824
               
               
               Cow position:chr8:12539415-12539910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 143

               
               
               Conread position:345-815
               
               
               Cow position:chr8:58856330-58855837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:336
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):44, 72

               
               
               Conread position:348-825
               
               
               Cow position:chr8:25414265-25413756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 386

               
               
               Conread position:353-645
               
               
               Cow position:chr8:47889456-47889138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):29, 111

               
               
               Conread position:362-825
               
               
               Cow position:chr8:1385226-1384724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:326
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 105

               
               
               Conread position:374-815
               
               
               Cow position:chr8:4745686-4746149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 161

               
               
               Conread position:379-729
               
               
               Cow position:chr8:33407808-33408172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):10, 114

               
               
               Conread position:387-825
               
               
               Cow position:chr8:8398534-8398984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 276

               
               
               Conread position:388-834
               
               
               Cow position:chr8:47658722-47659195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 328

               
               
               Conread position:396-787
               
               
               Cow position:chr8:3291551-3291952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 234

               
               
               Conread position:414-733
               
               
               Cow position:chr8:13222773-13223108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):9, 122

               
               
               Conread position:414-834
               
               
               Cow position:chr8:12311309-12311748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:296
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):10, 109

               
               
               Conread position:421-834
               
               
               Cow position:chr8:19823005-19823428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):53, 34

               
               
               Conread position:421-834
               
               
               Cow position:chr8:45337593-45338028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chr8:51254077-51254511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 41

               
               
               Conread position:422-834
               
               
               Cow position:chr8:19361165-19360741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 39

               
               
               Conread position:422-834
               
               
               Cow position:chr8:34111296-34110865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:293
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):58, 88

               
               
               Conread position:422-834
               
               
               Cow position:chr8:47655231-47655660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):63, 284

               
               
               Conread position:423-624
               
               
               Cow position:chr8:20569532-20569317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):6, 161

               
               
               Conread position:423-825
               
               
               Cow position:chr8:53981177-53980743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:303
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):7, 133

               
               
               Conread position:427-803
               
               
               Cow position:chr8:9169893-9170286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:269
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):56, 292

               
               
               Conread position:427-825
               
               
               Cow position:chr8:44110622-44110218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):51, 23

               
               
               Conread position:427-834
               
               
               Cow position:chr8:9263117-9263530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):76, 17

               
               
               Conread position:431-774
               
               
               Cow position:chr8:3659034-3659398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:254
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):45, 290

               
               
               Conread position:431-825
               
               
               Cow position:chr8:32080986-32081385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):59, 123

               
               
               Conread position:434-782
               
               
               Cow position:chr8:12740589-12740954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 284

               
               
               Conread position:439-834
               
               
               Cow position:chr8:14629675-14630091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 282

               
               
               Conread position:439-834
               
               
               Cow position:chr8:59658080-59657669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 117

               
               
               Conread position:440-832
               
               
               Cow position:chr8:34406974-34406578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:276
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):12, 33

               
               
               Conread position:450-808
               
               
               Cow position:chr8:2237087-2237451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):79, 159

               
               
               Conread position:486-835
               
               
               Cow position:chr8:44124554-44124188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:264
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):39, 138

               
               
               Conread position:490-757
               
               
               Cow position:chr8:45246615-45246899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 15

               
               
               Conread position:491-748
               
               
               Cow position:chr8:15789799-15789523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-777
               
               
               Cow position:chr8:45191462-45191161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):20, 192

               
               
               Conread position:491-778
               
               
               Cow position:chr8:51000813-51000504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 226

               
               
               Conread position:491-782
               
               
               Cow position:chr8:6852663-6852353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-782
               
               
               Cow position:chr8:13544536-13544846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-811
               
               
               Cow position:chr8:51825460-51825793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):34, 226

               
               
               Conread position:491-818
               
               
               Cow position:chr8:17314536-17314191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):34, 229

               
               
               Conread position:491-834
               
               
               Cow position:chr8:26869521-26869161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:492-829
               
               
               Cow position:chr8:29011140-29010786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):33, 219

               
               
               Conread position:494-819
               
               
               Cow position:chr8:23224256-23223932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 58

               
               
               Conread position:497-825
               
               
               Cow position:chr8:12452545-12452198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:247
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):28, 224

               
               
               Conread position:499-834
               
               
               Cow position:chr8:16092342-16092008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:237
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):59, 32

               
               
               Conread position:504-831
               
               
               Cow position:chr8:32650159-32649827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:505-787
               
               
               Cow position:chr8:36333206-36333496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:505-806
               
               
               Cow position:chr8:47590546-47590842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:505-815
               
               
               Cow position:chr8:34484650-34484956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):12, 31

               
               
               Conread position:505-825
               
               
               Cow position:chr8:23774107-23773781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:505-825
               
               
               Cow position:chr8:55444938-55445266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:505-834
               
               
               Cow position:chr8:2889125-2888790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:505-834
               
               
               Cow position:chr8:8553246-8553582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:505-834
               
               
               Cow position:chr8:24912823-24913160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:506-832
               
               
               Cow position:chr8:40549812-40550145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:508-834
               
               
               Cow position:chr8:21234478-21234144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):61, 27

               
               
               Conread position:514-823
               
               
               Cow position:chr8:55303373-55303047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):59, 23

               
               
               Conread position:516-825
               
               
               Cow position:chr8:32926867-32927180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):8, 156

               
               
               Conread position:521-740
               
               
               Cow position:chr8:46143449-46143223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:521-808
               
               
               Cow position:chr8:8393559-8393853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:523-834
               
               
               Cow position:chr8:1018164-1018479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):47, 183

               
               
               Conread position:527-718
               
               
               Cow position:chr8:46744186-46744386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 178

               
               
               Conread position:527-807
               
               
               Cow position:chr8:8877417-8877130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):54, 8

               
               
               Conread position:529-825
               
               
               Cow position:chr8:42441166-42440861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):17, 177

               
               
               Conread position:532-790
               
               
               Cow position:chr8:37715566-37715311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):14, 119

               
               
               Conread position:539-691
               
               
               Cow position:chr8:17268627-17268782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:545-819
               
               
               Cow position:chr8:4309753-4309474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):28, 130

               
               
               Conread position:569-782
               
               
               Cow position:chr8:39516615-39516833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):79, 136

               
               
               Conread position:569-834
               
               
               Cow position:chr8:1570529-1570259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-834
               
               
               Cow position:chr8:44868816-44868548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):83, 19

               
               
               Conread position:569-849
               
               
               Cow position:chr8:216908-217187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):77, 103

               
               
               Conread position:570-825
               
               
               Cow position:chr8:24230831-24230576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):77, 16

               
               
               Conread position:572-825
               
               
               Cow position:chr8:26878662-26878404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):75, 133

               
               
               Conread position:575-813
               
               
               Cow position:chr8:11137426-11137185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):62, 125

               
               
               Conread position:575-825
               
               
               Cow position:chr8:32434448-32434700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):72, 125

               
               
               Conread position:578-825
               
               
               Cow position:chr8:8667447-8667699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):69, 127

               
               
               Conread position:584-824
               
               
               Cow position:chr8:32989425-32989672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 120

               
               
               Conread position:589-834
               
               
               Cow position:chr8:57280958-57280711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):58, 78

               
               
               Conread position:591-788
               
               
               Cow position:chr8:38629428-38629226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):46, 116

               
               
               Conread position:591-832
               
               
               Cow position:chr8:31885577-31885333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):55, 112

               
               
               Conread position:591-834
               
               
               Cow position:chr8:2823917-2824163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):50, 78

               
               
               Conread position:591-834
               
               
               Cow position:chr8:24192642-24192394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-834
               
               
               Cow position:chr8:39774884-39775132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:592-834
               
               
               Cow position:chr8:1110564-1110318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):54, 80

               
               
               Conread position:595-825
               
               
               Cow position:chr8:49520633-49520396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:182
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):51, 109

               
               
               Conread position:596-819
               
               
               Cow position:chr8:13736925-13736698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):50, 106

               
               
               Conread position:601-834
               
               
               Cow position:chr8:11592506-11592276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):36, 101

               
               
               Conread position:601-834
               
               
               Cow position:chr8:24872906-24873140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):47, 97

               
               
               Conread position:607-834
               
               
               Cow position:chr8:7611623-7611845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):41, 93

               
               
               Conread position:609-823
               
               
               Cow position:chr8:45153955-45154172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):39, 94

               
               
               Conread position:609-834
               
               
               Cow position:chr8:22960157-22960387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:615-807
               
               
               Cow position:chr8:35799066-35798873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):30, 55

               
               
               Conread position:620-825
               
               
               Cow position:chr8:13935978-13936189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):27, 85

               
               
               Conread position:621-830
               
               
               Cow position:chr8:6748414-6748620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):27, 44

               
               
               Conread position:625-825
               
               
               Cow position:chr8:16024909-16025111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):21, 50

               
               
               Conread position:645-826
               
               
               Cow position:chr8:51505452-51505629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:645-834
               
               
               Cow position:chr8:7051755-7051567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:151
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:645-834
               
               
               Cow position:chr8:7251178-7250987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):19, 57

               
               
               Conread position:645-834
               
               
               Cow position:chr8:13634093-13633906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:645-834
               
               
               Cow position:chr8:18208621-18208801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):152, 52

               
               
               Conread position:650-824
               
               
               Cow position:chr8:28882673-28882502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:652-825
               
               
               Cow position:chr8:27153818-27153986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:655-834
               
               
               Cow position:chr8:21208036-21207851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):12, 42

               
               
               Conread position:666-804
               
               
               Cow position:chr8:33046957-33046821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:666-825
               
               
               Cow position:chr8:42487212-42487054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:666-834
               
               
               Cow position:chr8:3853727-3853898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):105, 31

               
               
               Conread position:666-834
               
               
               Cow position:chr8:18056006-18055836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:144
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):50, 30

               
               
               Conread position:667-825
               
               
               Cow position:chr8:46453511-46453669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):13, 26

               
               
               Conread position:668-829
               
               
               Cow position:chr8:6466176-6466017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:668-834
               
               
               Cow position:chr8:3334334-3334169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:678-825
               
               
               Cow position:chr8:12248550-12248404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:680-796
               
               
               Cow position:chr8:49220274-49220159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:681-834
               
               
               Cow position:chr8:47889141-47888988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:689-815
               
               
               Cow position:chr8:15218849-15218973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:696-834
               
               
               Cow position:chr8:26196615-26196752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:698-825
               
               
               Cow position:chr8:26606522-26606395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr8:1017432-1017297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr8:3956311-3956175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:715-834
               
               
               Cow position:chr8:38393889-38393770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-833
               
               
               Cow position:chr9:3730708-3729839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:896
               
               
               Alignm identity:620
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 42

               
               
               Conread position:16-834
               
               
               Cow position:chr9:30281348-30282212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:881
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:69-829
               
               
               Cow position:chr9:34971-35752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:796
               
               
               Alignm identity:527
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 38

               
               
               Conread position:71-834
               
               
               Cow position:chr9:5628440-5627608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:837
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 36

               
               
               Conread position:73-332
               
               
               Cow position:chr9:1570178-1570456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):32, 53

               
               
               Conread position:73-334
               
               
               Cow position:chr9:39971562-39971837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):152, 34

               
               
               Conread position:73-382
               
               
               Cow position:chr9:9415817-9415473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):62, 28

               
               
               Conread position:73-382
               
               
               Cow position:chr9:10665508-10665177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:73-398
               
               
               Cow position:chr9:20321251-20320890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-410
               
               
               Cow position:chr9:10634502-10634153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):116, 35

               
               
               Conread position:73-441
               
               
               Cow position:chr9:37193814-37194220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 239

               
               
               Conread position:73-453
               
               
               Cow position:chr9:10803292-10802864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:294
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:73-453
               
               
               Cow position:chr9:42052916-42053339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:287
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:73-462
               
               
               Cow position:chr9:45383843-45383408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:305
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:73-554
               
               
               Cow position:chr9:5839523-5840063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:379
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):17, 39

               
               
               Conread position:73-617
               
               
               Cow position:chr9:23028421-23029005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 112

               
               
               Conread position:73-718
               
               
               Cow position:chr9:7006359-7005646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-749
               
               
               Cow position:chr9:23004977-23005686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-771
               
               
               Cow position:chr9:29338508-29337761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:752
               
               
               Alignm identity:526
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:73-818
               
               
               Cow position:chr9:790701-791510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:819
               
               
               Alignm identity:543
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:73-825
               
               
               Cow position:chr9:1100204-1099392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:815
               
               
               Alignm identity:538
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-825
               
               
               Cow position:chr9:3807212-3806396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:822
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:73-829
               
               
               Cow position:chr9:2834382-2835200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:824
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:73-829
               
               
               Cow position:chr9:45877138-45876315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:832
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-833
               
               
               Cow position:chr9:54996243-54995427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:821
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 35

               
               
               Conread position:73-834
               
               
               Cow position:chr9:217487-218326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:845
               
               
               Alignm identity:546
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 38

               
               
               Conread position:73-834
               
               
               Cow position:chr9:1990934-1991746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:833
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:73-834
               
               
               Cow position:chr9:3062207-3061380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:835
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr9:3756228-3757042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:826
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:73-834
               
               
               Cow position:chr9:3997153-3997969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:825
               
               
               Alignm identity:558
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:73-834
               
               
               Cow position:chr9:5452020-5452851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:834
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr9:13313162-13312354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:815
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 35

               
               
               Conread position:73-834
               
               
               Cow position:chr9:13471972-13472772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:809
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:73-834
               
               
               Cow position:chr9:20942097-20941263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:840
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 29

               
               
               Conread position:73-834
               
               
               Cow position:chr9:48794676-48795503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:832
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:74-410
               
               
               Cow position:chr9:28726200-28725838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):75, 17

               
               
               Conread position:74-478
               
               
               Cow position:chr9:64055052-64054612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:310
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):25, 31

               
               
               Conread position:75-387
               
               
               Cow position:chr9:61130492-61130159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):73, 23

               
               
               Conread position:75-632
               
               
               Cow position:chr9:22803044-22803656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 32

               
               
               Conread position:76-453
               
               
               Cow position:chr9:11477643-11478067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):70, 31

               
               
               Conread position:79-553
               
               
               Cow position:chr9:24726145-24725685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:325
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):143, 28

               
               
               Conread position:96-454
               
               
               Cow position:chr9:51556548-51556157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):8, 33

               
               
               Conread position:97-825
               
               
               Cow position:chr9:62668971-62669752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:789
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 32

               
               
               Conread position:105-834
               
               
               Cow position:chr9:33067921-33068705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:790
               
               
               Alignm identity:546
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 17

               
               
               Conread position:111-480
               
               
               Cow position:chr9:53603141-53603541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:274
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):12, 25

               
               
               Conread position:113-387
               
               
               Cow position:chr9:60590347-60590057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:122-387
               
               
               Cow position:chr9:12194901-12195190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:122-456
               
               
               Cow position:chr9:5886842-5887201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):18, 233

               
               
               Conread position:122-834
               
               
               Cow position:chr9:14046219-14045462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:768
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 79

               
               
               Conread position:123-801
               
               
               Cow position:chr9:62733637-62734334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:445
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):101, 173

               
               
               Conread position:124-478
               
               
               Cow position:chr9:30477196-30476832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):16, 54

               
               
               Conread position:138-375
               
               
               Cow position:chr9:37068387-37068138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 11

               
               
               Conread position:139-540
               
               
               Cow position:chr9:40316664-40316234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:139-793
               
               
               Cow position:chr9:3216803-3217502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:456
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:142-453
               
               
               Cow position:chr9:10326766-10326424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:142-469
               
               
               Cow position:chr9:28821918-28822271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:142-796
               
               
               Cow position:chr9:2548162-2548868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 19

               
               
               Conread position:142-806
               
               
               Cow position:chr9:30401807-30401103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 17

               
               
               Conread position:142-823
               
               
               Cow position:chr9:36844412-36845127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:142-834
               
               
               Cow position:chr9:32972898-32972156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:142-834
               
               
               Cow position:chr9:42570749-42570005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:143-337
               
               
               Cow position:chr9:17580179-17580390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-369
               
               
               Cow position:chr9:26478171-26478417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-372
               
               
               Cow position:chr9:9260743-9260993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-382
               
               
               Cow position:chr9:3717895-3717635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-387
               
               
               Cow position:chr9:18381472-18381743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-393
               
               
               Cow position:chr9:25959144-25959412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):109, 10

               
               
               Conread position:143-398
               
               
               Cow position:chr9:17296575-17296848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):74, 13

               
               
               Conread position:143-431
               
               
               Cow position:chr9:24427997-24427699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-453
               
               
               Cow position:chr9:9611355-9611696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr9:13620465-13620806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr9:16639806-16639465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chr9:42475555-42475892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-456
               
               
               Cow position:chr9:2201122-2200785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):79, 9

               
               
               Conread position:143-466
               
               
               Cow position:chr9:18205591-18205253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-505
               
               
               Cow position:chr9:33999764-33999374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:282
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-513
               
               
               Cow position:chr9:12378977-12378577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-515
               
               
               Cow position:chr9:47882754-47883156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:277
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:143-525
               
               
               Cow position:chr9:29106407-29105992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:288
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:143-539
               
               
               Cow position:chr9:1983890-1983474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:284
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:143-540
               
               
               Cow position:chr9:1306818-1307254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-540
               
               
               Cow position:chr9:64562725-64562309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:279
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-542
               
               
               Cow position:chr9:24996883-24996469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 10

               
               
               Conread position:143-551
               
               
               Cow position:chr9:874185-873743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:304
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-580
               
               
               Cow position:chr9:3052796-3052317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:321
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-611
               
               
               Cow position:chr9:34918137-34917636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-627
               
               
               Cow position:chr9:43494580-43494049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:358
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:143-632
               
               
               Cow position:chr9:62817689-62818225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:361
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-685
               
               
               Cow position:chr9:18831264-18830677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-772
               
               
               Cow position:chr9:54413086-54413756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:143-778
               
               
               Cow position:chr9:37253936-37253249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-787
               
               
               Cow position:chr9:24873454-24874110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:143-796
               
               
               Cow position:chr9:38634311-38633607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-815
               
               
               Cow position:chr9:17634019-17633289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 16

               
               
               Conread position:143-825
               
               
               Cow position:chr9:22656330-22655611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-829
               
               
               Cow position:chr9:2495209-2495946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-830
               
               
               Cow position:chr9:2208140-2208874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-832
               
               
               Cow position:chr9:61739523-61740244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:532
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr9:777279-778025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr9:2527808-2527077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr9:5327834-5328558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr9:9016604-9015863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:143-834
               
               
               Cow position:chr9:17018286-17017543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr9:30675606-30674864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr9:37158080-37158821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr9:37173873-37174616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr9:39303021-39303764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr9:40142827-40143565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:143-834
               
               
               Cow position:chr9:47006265-47005530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:143-834
               
               
               Cow position:chr9:47045479-47044736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-834
               
               
               Cow position:chr9:59507685-59508384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-835
               
               
               Cow position:chr9:55032034-55031303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:144-409
               
               
               Cow position:chr9:44107589-44107312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-410
               
               
               Cow position:chr9:45974807-45975097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):73, 12

               
               
               Conread position:144-456
               
               
               Cow position:chr9:8727868-8727533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-614
               
               
               Cow position:chr9:34568168-34567662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:357
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-631
               
               
               Cow position:chr9:44579694-44580226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:353
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):78, 9

               
               
               Conread position:144-787
               
               
               Cow position:chr9:56861650-56862311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 15

               
               
               Conread position:144-815
               
               
               Cow position:chr9:59432034-59431316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 18

               
               
               Conread position:144-834
               
               
               Cow position:chr9:28681731-28680989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-834
               
               
               Cow position:chr9:28773735-28774453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:145-402
               
               
               Cow position:chr9:13186109-13185843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):85, 7

               
               
               Conread position:145-692
               
               
               Cow position:chr9:34238225-34238829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-733
               
               
               Cow position:chr9:1838481-1837845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-794
               
               
               Cow position:chr9:51692098-51692791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 66

               
               
               Conread position:145-819
               
               
               Cow position:chr9:52001573-52002291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 14

               
               
               Conread position:145-825
               
               
               Cow position:chr9:59479327-59480050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:145-834
               
               
               Cow position:chr9:12162126-12161397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:548
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-835
               
               
               Cow position:chr9:1070754-1071496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:146-337
               
               
               Cow position:chr9:26064654-26064446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):13, 58

               
               
               Conread position:146-504
               
               
               Cow position:chr9:62400779-62401183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:288
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):5, 13

               
               
               Conread position:146-565
               
               
               Cow position:chr9:4553325-4552875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:312
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):13, 100

               
               
               Conread position:146-602
               
               
               Cow position:chr9:23540827-23540358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:325
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):13, 140

               
               
               Conread position:146-639
               
               
               Cow position:chr9:58615165-58615706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 13

               
               
               Conread position:146-738
               
               
               Cow position:chr9:42868341-42868984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 510

               
               
               Conread position:146-822
               
               
               Cow position:chr9:56165903-56166613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:463
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):76, 7

               
               
               Conread position:146-834
               
               
               Cow position:chr9:27038644-27037897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 497

               
               
               Conread position:147-365
               
               
               Cow position:chr9:9780410-9780643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):12, 213

               
               
               Conread position:147-382
               
               
               Cow position:chr9:52753691-52753949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-387
               
               
               Cow position:chr9:29184520-29184258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):12, 232

               
               
               Conread position:147-411
               
               
               Cow position:chr9:2618255-2618547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-461
               
               
               Cow position:chr9:10760682-10760350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):12, 169

               
               
               Conread position:147-464
               
               
               Cow position:chr9:27050675-27050330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):13, 130

               
               
               Conread position:147-480
               
               
               Cow position:chr9:20900497-20900138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):74, 12

               
               
               Conread position:147-521
               
               
               Cow position:chr9:58674379-58674787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:287
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):12, 156

               
               
               Conread position:147-521
               
               
               Cow position:chr9:59540956-59540564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 280

               
               
               Conread position:147-522
               
               
               Cow position:chr9:22755409-22755804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 55

               
               
               Conread position:147-547
               
               
               Cow position:chr9:37168990-37168563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:282
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):12, 409

               
               
               Conread position:147-579
               
               
               Cow position:chr9:43302074-43302539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-623
               
               
               Cow position:chr9:19079385-19078870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:336
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-639
               
               
               Cow position:chr9:4284751-4284213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:351
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):12, 329

               
               
               Conread position:147-679
               
               
               Cow position:chr9:1520111-1519540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 355

               
               
               Conread position:147-721
               
               
               Cow position:chr9:18110231-18109603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 324

               
               
               Conread position:147-725
               
               
               Cow position:chr9:12285178-12285809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 287

               
               
               Conread position:147-778
               
               
               Cow position:chr9:51011044-51010412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 57

               
               
               Conread position:147-796
               
               
               Cow position:chr9:19155755-19156466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 603

               
               
               Conread position:147-811
               
               
               Cow position:chr9:13181439-13180734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 324

               
               
               Conread position:147-815
               
               
               Cow position:chr9:34945494-34946214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 590

               
               
               Conread position:147-819
               
               
               Cow position:chr9:6365903-6365181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 126

               
               
               Conread position:147-824
               
               
               Cow position:chr9:59197377-59196656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 181

               
               
               Conread position:147-825
               
               
               Cow position:chr9:6764241-6764974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 596

               
               
               Conread position:147-825
               
               
               Cow position:chr9:16179114-16178385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 355

               
               
               Conread position:147-834
               
               
               Cow position:chr9:21412831-21412101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 43

               
               
               Conread position:147-834
               
               
               Cow position:chr9:28025350-28024608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 610

               
               
               Conread position:147-834
               
               
               Cow position:chr9:31811107-31810367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 609

               
               
               Conread position:147-834
               
               
               Cow position:chr9:34059103-34059844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 335

               
               
               Conread position:147-834
               
               
               Cow position:chr9:37098121-37097411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 34

               
               
               Conread position:147-834
               
               
               Cow position:chr9:52037881-52037168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:458
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):12, 172

               
               
               Conread position:148-326
               
               
               Cow position:chr9:12461703-12461511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-443
               
               
               Cow position:chr9:59454368-59454696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-457
               
               
               Cow position:chr9:17307336-17306995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-570
               
               
               Cow position:chr9:34553719-34554157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:291
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):74, 11

               
               
               Conread position:148-621
               
               
               Cow position:chr9:3411371-3411886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 340

               
               
               Conread position:148-764
               
               
               Cow position:chr9:5533406-5534053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 295

               
               
               Conread position:148-808
               
               
               Cow position:chr9:29193045-29193745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 179

               
               
               Conread position:148-825
               
               
               Cow position:chr9:7058526-7059267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 282

               
               
               Conread position:148-834
               
               
               Cow position:chr9:10857560-10856809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 62

               
               
               Conread position:148-834
               
               
               Cow position:chr9:62131557-62130823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 60

               
               
               Conread position:150-452
               
               
               Cow position:chr9:20578283-20577956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):72, 8

               
               
               Conread position:150-645
               
               
               Cow position:chr9:19546042-19545494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:370
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):42, 8

               
               
               Conread position:150-818
               
               
               Cow position:chr9:20988817-20988111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 9

               
               
               Conread position:150-834
               
               
               Cow position:chr9:26087487-26088209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:532
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 8

               
               
               Conread position:153-825
               
               
               Cow position:chr9:22442990-22442288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 165

               
               
               Conread position:153-836
               
               
               Cow position:chr9:1938520-1939245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 187

               
               
               Conread position:154-306
               
               
               Cow position:chr9:34742004-34741841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:155-527
               
               
               Cow position:chr9:30736989-30737399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:277
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):67, 352

               
               
               Conread position:155-829
               
               
               Cow position:chr9:27781391-27782095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 534

               
               
               Conread position:156-834
               
               
               Cow position:chr9:8951535-8952248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 85

               
               
               Conread position:156-834
               
               
               Cow position:chr9:18506309-18507035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 594

               
               
               Conread position:157-834
               
               
               Cow position:chr9:9957674-9958394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 585

               
               
               Conread position:158-376
               
               
               Cow position:chr9:15670369-15670129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-381
               
               
               Cow position:chr9:50002556-50002801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr9:2394107-2394353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr9:3311807-3311560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr9:9093796-9094042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr9:27107062-27107307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:158-382
               
               
               Cow position:chr9:31361655-31361901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-387
               
               
               Cow position:chr9:44920783-44920529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):64, 83

               
               
               Conread position:158-410
               
               
               Cow position:chr9:9442968-9442689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-410
               
               
               Cow position:chr9:35592621-35592901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):67, 30

               
               
               Conread position:158-440
               
               
               Cow position:chr9:3058107-3058415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):64, 277

               
               
               Conread position:158-445
               
               
               Cow position:chr9:25701675-25701990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-449
               
               
               Cow position:chr9:22361643-22361956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 93

               
               
               Conread position:158-453
               
               
               Cow position:chr9:2682006-2681679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr9:30187223-30186897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chr9:56177392-56177065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-456
               
               
               Cow position:chr9:49073549-49073876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):64, 17

               
               
               Conread position:158-507
               
               
               Cow position:chr9:6304954-6304570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:158-524
               
               
               Cow position:chr9:216493-216894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:272
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):64, 344

               
               
               Conread position:158-528
               
               
               Cow position:chr9:18243465-18243870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:273
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-528
               
               
               Cow position:chr9:24424040-24423635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-528
               
               
               Cow position:chr9:37908366-37907960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:279
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-553
               
               
               Cow position:chr9:35565021-35565454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:291
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-573
               
               
               Cow position:chr9:34690016-34690465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:307
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):65, 429

               
               
               Conread position:158-579
               
               
               Cow position:chr9:49982015-49981557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr9:771731-772194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:311
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):64, 112

               
               
               Conread position:158-580
               
               
               Cow position:chr9:34688962-34688537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:299
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):81, 39

               
               
               Conread position:158-580
               
               
               Cow position:chr9:35624832-35624366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:313
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chr9:36829534-36830000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:322
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):64, 113

               
               
               Conread position:158-580
               
               
               Cow position:chr9:63563937-63563466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:318
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):64, 50

               
               
               Conread position:158-612
               
               
               Cow position:chr9:60409920-60409418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:336
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-614
               
               
               Cow position:chr9:18711010-18710507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-635
               
               
               Cow position:chr9:174257-174780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:349
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-643
               
               
               Cow position:chr9:4673574-4673047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:158-644
               
               
               Cow position:chr9:13493247-13492737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:336
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):65, 108

               
               
               Conread position:158-645
               
               
               Cow position:chr9:50327214-50326680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:158-645
               
               
               Cow position:chr9:59495666-59496200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:355
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-692
               
               
               Cow position:chr9:17060840-17061426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 376

               
               
               Conread position:158-692
               
               
               Cow position:chr9:33843841-33843254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 343

               
               
               Conread position:158-769
               
               
               Cow position:chr9:31416998-31417661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 335

               
               
               Conread position:158-779
               
               
               Cow position:chr9:44202562-44203236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 324

               
               
               Conread position:158-788
               
               
               Cow position:chr9:53777188-53776536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 38

               
               
               Conread position:158-797
               
               
               Cow position:chr9:30139096-30139782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 344

               
               
               Conread position:158-825
               
               
               Cow position:chr9:2857361-2856642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-825
               
               
               Cow position:chr9:22570622-22569903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 350

               
               
               Conread position:158-825
               
               
               Cow position:chr9:46627828-46627111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 36

               
               
               Conread position:158-825
               
               
               Cow position:chr9:47171571-47170846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 593

               
               
               Conread position:158-826
               
               
               Cow position:chr9:2864059-2864764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 168

               
               
               Conread position:158-831
               
               
               Cow position:chr9:6887096-6886384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 242

               
               
               Conread position:158-834
               
               
               Cow position:chr9:1062178-1062906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 594

               
               
               Conread position:158-834
               
               
               Cow position:chr9:4939976-4940709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 189

               
               
               Conread position:158-834
               
               
               Cow position:chr9:5430984-5430256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 491

               
               
               Conread position:158-834
               
               
               Cow position:chr9:6707400-6708128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 577

               
               
               Conread position:158-834
               
               
               Cow position:chr9:7103713-7104442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 350

               
               
               Conread position:158-834
               
               
               Cow position:chr9:15052381-15053091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 154

               
               
               Conread position:158-834
               
               
               Cow position:chr9:18071998-18071275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:538
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 119

               
               
               Conread position:158-834
               
               
               Cow position:chr9:26326263-26325535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 261

               
               
               Conread position:158-834
               
               
               Cow position:chr9:28785860-28785131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chr9:64011712-64012440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 116

               
               
               Conread position:158-849
               
               
               Cow position:chr9:3959684-3960395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 149

               
               
               Conread position:159-436
               
               
               Cow position:chr9:58133078-58133395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:159-544
               
               
               Cow position:chr9:9516176-9515765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 24

               
               
               Conread position:159-580
               
               
               Cow position:chr9:58747307-58747766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:312
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):65, 46

               
               
               Conread position:159-803
               
               
               Cow position:chr9:50727720-50728368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:429
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):63, 90

               
               
               Conread position:160-377
               
               
               Cow position:chr9:15950181-15949972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 54

               
               
               Conread position:160-404
               
               
               Cow position:chr9:58191878-58191623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):132, 65

               
               
               Conread position:160-441
               
               
               Cow position:chr9:31115171-31114857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 38

               
               
               Conread position:160-446
               
               
               Cow position:chr9:9634173-9633856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:160-446
               
               
               Cow position:chr9:16981553-16981871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:160-548
               
               
               Cow position:chr9:5058577-5058992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):62, 142

               
               
               Conread position:160-554
               
               
               Cow position:chr9:25974473-25974899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:288
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):63, 254

               
               
               Conread position:160-579
               
               
               Cow position:chr9:2223163-2222722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:292
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:160-579
               
               
               Cow position:chr9:3932595-3933059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:317
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):70, 41

               
               
               Conread position:160-685
               
               
               Cow position:chr9:28702966-28702391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:379
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):62, 321

               
               
               Conread position:160-801
               
               
               Cow position:chr9:47110746-47110095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:431
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):54, 47

               
               
               Conread position:160-803
               
               
               Cow position:chr9:1405306-1404631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 71

               
               
               Conread position:160-808
               
               
               Cow position:chr9:24917772-24918473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 274

               
               
               Conread position:160-814
               
               
               Cow position:chr9:10111484-10110811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:455
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):62, 107

               
               
               Conread position:160-815
               
               
               Cow position:chr9:26099973-26100644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 125

               
               
               Conread position:160-815
               
               
               Cow position:chr9:60460000-60460687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:444
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):61, 191

               
               
               Conread position:160-819
               
               
               Cow position:chr9:3075652-3074966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 271

               
               
               Conread position:160-823
               
               
               Cow position:chr9:21461970-21461279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 419

               
               
               Conread position:160-829
               
               
               Cow position:chr9:5007481-5006778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 197

               
               
               Conread position:160-832
               
               
               Cow position:chr9:11850352-11851073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:468
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):65, 115

               
               
               Conread position:160-834
               
               
               Cow position:chr9:6253080-6252358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 349

               
               
               Conread position:160-834
               
               
               Cow position:chr9:9326584-9327276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:450
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):60, 116

               
               
               Conread position:160-834
               
               
               Cow position:chr9:43496650-43495923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 593

               
               
               Conread position:161-382
               
               
               Cow position:chr9:14052755-14052526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 8

               
               
               Conread position:161-389
               
               
               Cow position:chr9:9752260-9752013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):61, 229

               
               
               Conread position:161-644
               
               
               Cow position:chr9:9491435-9491957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:364
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):58, 273

               
               
               Conread position:161-806
               
               
               Cow position:chr9:6328899-6329572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:438
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):64, 26

               
               
               Conread position:161-832
               
               
               Cow position:chr9:23422110-23421382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 243

               
               
               Conread position:162-395
               
               
               Cow position:chr9:825392-825645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):60, 248

               
               
               Conread position:162-693
               
               
               Cow position:chr9:5524846-5525389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:374
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):18, 250

               
               
               Conread position:162-815
               
               
               Cow position:chr9:3388314-3388993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 346

               
               
               Conread position:163-537
               
               
               Cow position:chr9:30439903-30439497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):38, 59

               
               
               Conread position:163-811
               
               
               Cow position:chr9:46670433-46669768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 113

               
               
               Conread position:163-823
               
               
               Cow position:chr9:42901936-42902649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 62

               
               
               Conread position:164-452
               
               
               Cow position:chr9:43670354-43670046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):66, 104

               
               
               Conread position:164-834
               
               
               Cow position:chr9:10566849-10567577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 344

               
               
               Conread position:165-404
               
               
               Cow position:chr9:39696932-39697199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:166-547
               
               
               Cow position:chr9:38547050-38547453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:256
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):59, 241

               
               
               Conread position:169-834
               
               
               Cow position:chr9:53531200-53530509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:445
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):37, 315

               
               
               Conread position:170-831
               
               
               Cow position:chr9:46667292-46668007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 569

               
               
               Conread position:171-834
               
               
               Cow position:chr9:50840934-50840222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:173-467
               
               
               Cow position:chr9:20317924-20317604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):52, 68

               
               
               Conread position:175-819
               
               
               Cow position:chr9:1997815-1998491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:180-599
               
               
               Cow position:chr9:59539397-59538949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):39, 97

               
               
               Conread position:188-775
               
               
               Cow position:chr9:64025343-64025979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:413
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):29, 86

               
               
               Conread position:189-387
               
               
               Cow position:chr9:38346671-38346886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:189-819
               
               
               Cow position:chr9:26055517-26054850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 339

               
               
               Conread position:189-834
               
               
               Cow position:chr9:4127482-4128155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 110

               
               
               Conread position:189-834
               
               
               Cow position:chr9:17302493-17303183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 559

               
               
               Conread position:189-834
               
               
               Cow position:chr9:28657570-28658260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 312

               
               
               Conread position:208-822
               
               
               Cow position:chr9:54459042-54459700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 277

               
               
               Conread position:208-825
               
               
               Cow position:chr9:2873935-2873272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 538

               
               
               Conread position:211-766
               
               
               Cow position:chr9:41312586-41313184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 532

               
               
               Conread position:213-551
               
               
               Cow position:chr9:7830454-7830816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):71, 12

               
               
               Conread position:214-818
               
               
               Cow position:chr9:1850207-1850809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 7

               
               
               Conread position:221-472
               
               
               Cow position:chr9:23043833-23044092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 204

               
               
               Conread position:221-555
               
               
               Cow position:chr9:15982149-15981789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):17, 73

               
               
               Conread position:221-692
               
               
               Cow position:chr9:13187651-13187134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:344
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:221-834
               
               
               Cow position:chr9:18008046-18007415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 287

               
               
               Conread position:221-834
               
               
               Cow position:chr9:31092492-31093130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:429
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):15, 196

               
               
               Conread position:222-528
               
               
               Cow position:chr9:8601462-8601775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 56

               
               
               Conread position:224-606
               
               
               Cow position:chr9:10671905-10672312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 183

               
               
               Conread position:225-813
               
               
               Cow position:chr9:3222892-3222284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 27

               
               
               Conread position:225-822
               
               
               Cow position:chr9:52526594-52525952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 520

               
               
               Conread position:229-528
               
               
               Cow position:chr9:9623367-9623051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):53, 36

               
               
               Conread position:235-635
               
               
               Cow position:chr9:20409794-20409377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:283
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):57, 295

               
               
               Conread position:235-764
               
               
               Cow position:chr9:10678505-10679066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 27

               
               
               Conread position:235-786
               
               
               Cow position:chr9:29300600-29301149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:370
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):104, 53

               
               
               Conread position:241-721
               
               
               Cow position:chr9:36088948-36088437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:323
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):37, 61

               
               
               Conread position:242-781
               
               
               Cow position:chr9:50776122-50775549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:376
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):33, 240

               
               
               Conread position:243-635
               
               
               Cow position:chr9:51178245-51178675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:243-808
               
               
               Cow position:chr9:2173956-2173350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:399
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):49, 397

               
               
               Conread position:246-834
               
               
               Cow position:chr9:3546236-3545616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 181

               
               
               Conread position:248-540
               
               
               Cow position:chr9:25547743-25548056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:248-834
               
               
               Cow position:chr9:9578209-9577597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:399
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):66, 19

               
               
               Conread position:260-825
               
               
               Cow position:chr9:13220938-13220340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 377

               
               
               Conread position:262-832
               
               
               Cow position:chr9:46524824-46525414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 35

               
               
               Conread position:262-834
               
               
               Cow position:chr9:55796710-55797315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 273

               
               
               Conread position:272-834
               
               
               Cow position:chr9:17870890-17870283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 470

               
               
               Conread position:276-528
               
               
               Cow position:chr9:21841202-21841451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):63, 88

               
               
               Conread position:277-410
               
               
               Cow position:chr9:28356045-28356185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):62, 7

               
               
               Conread position:290-542
               
               
               Cow position:chr9:51160210-51159941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:290-547
               
               
               Cow position:chr9:54997241-54996964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:290-753
               
               
               Cow position:chr9:33478259-33477772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:328
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):49, 229

               
               
               Conread position:290-812
               
               
               Cow position:chr9:52407956-52408514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 238

               
               
               Conread position:290-818
               
               
               Cow position:chr9:2214507-2213939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 445

               
               
               Conread position:290-831
               
               
               Cow position:chr9:4305717-4306277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 137

               
               
               Conread position:291-825
               
               
               Cow position:chr9:44168958-44168388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 446

               
               
               Conread position:292-685
               
               
               Cow position:chr9:9210509-9210080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:292-781
               
               
               Cow position:chr9:45792214-45791690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 443

               
               
               Conread position:292-801
               
               
               Cow position:chr9:1640621-1640077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:358
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):50, 83

               
               
               Conread position:292-834
               
               
               Cow position:chr9:38679464-38678917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:293-558
               
               
               Cow position:chr9:44821249-44820966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 155

               
               
               Conread position:298-834
               
               
               Cow position:chr9:62443629-62444185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 39

               
               
               Conread position:310-596
               
               
               Cow position:chr9:22438846-22438547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):31, 208

               
               
               Conread position:315-831
               
               
               Cow position:chr9:12260022-12260572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 303

               
               
               Conread position:315-834
               
               
               Cow position:chr9:3575967-3576483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:331
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):27, 77

               
               
               Conread position:317-777
               
               
               Cow position:chr9:43856207-43856691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 24

               
               
               Conread position:340-518
               
               
               Cow position:chr9:29826176-29826355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):45, 77

               
               
               Conread position:341-825
               
               
               Cow position:chr9:9199403-9198901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 149

               
               
               Conread position:342-834
               
               
               Cow position:chr9:18539969-18539454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 144

               
               
               Conread position:345-621
               
               
               Cow position:chr9:388715-388412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:345-806
               
               
               Cow position:chr9:26281145-26280662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:326
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):33, 208

               
               
               Conread position:348-763
               
               
               Cow position:chr9:29787370-29787817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:302
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):41, 278

               
               
               Conread position:351-761
               
               
               Cow position:chr9:15987308-15986871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:299
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):32, 106

               
               
               Conread position:353-682
               
               
               Cow position:chr9:9872240-9871879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:355-823
               
               
               Cow position:chr9:22319117-22319613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:334
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:384-835
               
               
               Cow position:chr9:14003294-14002828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 54

               
               
               Conread position:388-773
               
               
               Cow position:chr9:17588398-17587995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:275
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):27, 305

               
               
               Conread position:391-834
               
               
               Cow position:chr9:17300872-17301341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:308
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):24, 16

               
               
               Conread position:392-834
               
               
               Cow position:chr9:56301209-56301651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:414-635
               
               
               Cow position:chr9:44920467-44920230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:414-821
               
               
               Cow position:chr9:37068072-37067649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 78

               
               
               Conread position:416-585
               
               
               Cow position:chr9:9415186-9415000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:421-720
               
               
               Cow position:chr9:37182086-37181765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):9, 295

               
               
               Conread position:421-736
               
               
               Cow position:chr9:9021381-9021718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 295

               
               
               Conread position:421-815
               
               
               Cow position:chr9:127651-128043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:276
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):9, 75

               
               
               Conread position:421-834
               
               
               Cow position:chr9:2484399-2484827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:295
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):9, 47

               
               
               Conread position:422-834
               
               
               Cow position:chr9:1248774-1249208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 300

               
               
               Conread position:426-834
               
               
               Cow position:chr9:58190676-58190253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:276
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):79, 139

               
               
               Conread position:427-831
               
               
               Cow position:chr9:12251196-12250785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:277
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):44, 165

               
               
               Conread position:427-834
               
               
               Cow position:chr9:56176986-56176559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 11

               
               
               Conread position:429-830
               
               
               Cow position:chr9:17007745-17008170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 9

               
               
               Conread position:430-825
               
               
               Cow position:chr9:8098367-8097954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:273
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):59, 287

               
               
               Conread position:430-834
               
               
               Cow position:chr9:825715-826145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:293
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):94, 36

               
               
               Conread position:434-834
               
               
               Cow position:chr9:43225491-43225912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 287

               
               
               Conread position:450-823
               
               
               Cow position:chr9:43668020-43667631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:271
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):33, 57

               
               
               Conread position:488-828
               
               
               Cow position:chr9:2595811-2595462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):37, 98

               
               
               Conread position:490-834
               
               
               Cow position:chr9:61198203-61198565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 226

               
               
               Conread position:491-834
               
               
               Cow position:chr9:6550328-6549966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 228

               
               
               Conread position:491-834
               
               
               Cow position:chr9:52402110-52401748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:495-834
               
               
               Cow position:chr9:30475404-30475063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 196

               
               
               Conread position:496-834
               
               
               Cow position:chr9:23044614-23044260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):28, 225

               
               
               Conread position:505-834
               
               
               Cow position:chr9:10326070-10325734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:505-834
               
               
               Cow position:chr9:10939850-10939513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):10, 25

               
               
               Conread position:506-800
               
               
               Cow position:chr9:62717913-62717628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):8, 30

               
               
               Conread position:509-834
               
               
               Cow position:chr9:20577989-20577664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 20

               
               
               Conread position:514-815
               
               
               Cow position:chr9:11505096-11504789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:514-834
               
               
               Cow position:chr9:39813432-39813104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:521-774
               
               
               Cow position:chr9:2681661-2681402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:521-834
               
               
               Cow position:chr9:24423430-24423110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:544-834
               
               
               Cow position:chr9:31114235-31113952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):29, 106

               
               
               Conread position:545-748
               
               
               Cow position:chr9:6549606-6549394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 164

               
               
               Conread position:545-806
               
               
               Cow position:chr9:60564521-60564787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 157

               
               
               Conread position:545-809
               
               
               Cow position:chr9:52036761-52036494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):27, 155

               
               
               Conread position:545-832
               
               
               Cow position:chr9:14794932-14794645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:545-834
               
               
               Cow position:chr9:52723494-52723195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):28, 133

               
               
               Conread position:566-834
               
               
               Cow position:chr9:41506784-41507057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):81, 139

               
               
               Conread position:569-819
               
               
               Cow position:chr9:6304314-6304569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):78, 136

               
               
               Conread position:569-831
               
               
               Cow position:chr9:40416002-40416264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):24, 105

               
               
               Conread position:569-834
               
               
               Cow position:chr9:24996303-24996038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):79, 132

               
               
               Conread position:569-834
               
               
               Cow position:chr9:30737733-30737464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):78, 137

               
               
               Conread position:569-834
               
               
               Cow position:chr9:35593030-35593299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 133

               
               
               Conread position:571-804
               
               
               Cow position:chr9:41053774-41053536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 15

               
               
               Conread position:591-782
               
               
               Cow position:chr9:61237915-61238110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):55, 96

               
               
               Conread position:591-834
               
               
               Cow position:chr9:3051945-3052193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-834
               
               
               Cow position:chr9:43493981-43493733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-834
               
               
               Cow position:chr9:50003485-50003237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:593-767
               
               
               Cow position:chr9:43579935-43579756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):54, 112

               
               
               Conread position:594-825
               
               
               Cow position:chr9:26081287-26081520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):54, 104

               
               
               Conread position:598-825
               
               
               Cow position:chr9:2631599-2631371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 94

               
               
               Conread position:601-834
               
               
               Cow position:chr9:1726712-1726947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):51, 23

               
               
               Conread position:605-823
               
               
               Cow position:chr9:25976550-25976330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:607-811
               
               
               Cow position:chr9:60322281-60322484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):41, 28

               
               
               Conread position:609-788
               
               
               Cow position:chr9:3934637-3934820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):37, 70

               
               
               Conread position:609-802
               
               
               Cow position:chr9:20315202-20315003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):32, 93

               
               
               Conread position:609-815
               
               
               Cow position:chr9:1516300-1516087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):37, 95

               
               
               Conread position:609-825
               
               
               Cow position:chr9:9094526-9094305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:611-834
               
               
               Cow position:chr9:34696261-34696034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:620-834
               
               
               Cow position:chr9:8283200-8283419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):27, 85

               
               
               Conread position:620-834
               
               
               Cow position:chr9:11157356-11157573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):26, 80

               
               
               Conread position:621-834
               
               
               Cow position:chr9:43845634-43845415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:623-833
               
               
               Cow position:chr9:1030738-1030946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 38

               
               
               Conread position:647-884
               
               
               Cow position:chr9:3547650-3547885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:652-808
               
               
               Cow position:chr9:30438710-30438555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):110, 7

               
               
               Conread position:664-811
               
               
               Cow position:chr9:55474813-55474672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:665-822
               
               
               Cow position:chr9:11744949-11745102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:666-825
               
               
               Cow position:chr9:28702374-28702216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):119, 21

               
               
               Conread position:666-834
               
               
               Cow position:chr9:35543572-35543739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:668-834
               
               
               Cow position:chr9:649097-649261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:672-834
               
               
               Cow position:chr9:3411970-3412128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:673-800
               
               
               Cow position:chr9:202335-202461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:673-834
               
               
               Cow position:chr9:1000414-1000254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:681-825
               
               
               Cow position:chr9:1259219-1259077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:688-832
               
               
               Cow position:chr9:22438288-22438145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr9:17061718-17061851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr9:20174795-20174922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:698-834
               
               
               Cow position:chr9:34240174-34240310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:701-834
               
               
               Cow position:chr9:42718806-42718673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:704-822
               
               
               Cow position:chr9:866245-866363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:710-834
               
               
               Cow position:chr9:7005632-7005508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:713-807
               
               
               Cow position:chr9:52661315-52661409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:724-829
               
               
               Cow position:chr9:29337661-29337556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:89
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:69-506
               
               
               Cow position:chrX:6543789-6543311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:73-220
               
               
               Cow position:chrX:14924564-14924416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 40

               
               
               Conread position:73-343
               
               
               Cow position:chrX:11819892-11819586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:73-382
               
               
               Cow position:chrX:30752302-30751956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-382
               
               
               Cow position:chrX:30816741-30817089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):58, 31

               
               
               Conread position:73-382
               
               
               Cow position:chrX:37816117-37815771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):66, 38

               
               
               Conread position:73-405
               
               
               Cow position:chrX:7178182-7177827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):25, 55

               
               
               Conread position:73-410
               
               
               Cow position:chrX:35847744-35847372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):18, 24

               
               
               Conread position:73-452
               
               
               Cow position:chrX:11855697-11855265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:299
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:73-453
               
               
               Cow position:chrX:11566442-11566013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:295
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):71, 34

               
               
               Conread position:73-467
               
               
               Cow position:chrX:11949965-11950401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:300
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-480
               
               
               Cow position:chrX:27705121-27704670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:315
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-579
               
               
               Cow position:chrX:33803493-33804025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:545
               
               
               Alignm identity:358
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):92, 31

               
               
               Conread position:73-629
               
               
               Cow position:chrX:40224715-40225327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:398
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):19, 433

               
               
               Conread position:73-647
               
               
               Cow position:chrX:12309858-12310496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:428
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):19, 40

               
               
               Conread position:73-769
               
               
               Cow position:chrX:30172180-30172944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:769
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:73-800
               
               
               Cow position:chrX:5639409-5640151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:776
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 34

               
               
               Conread position:73-819
               
               
               Cow position:chrX:16782808-16781996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:820
               
               
               Alignm identity:548
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:73-825
               
               
               Cow position:chrX:24769332-24770150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:823
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:73-825
               
               
               Cow position:chrX:31978313-31979133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:826
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:73-832
               
               
               Cow position:chrX:41156839-41156011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:833
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 17

               
               
               Conread position:73-834
               
               
               Cow position:chrX:4343277-4342449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:831
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:73-834
               
               
               Cow position:chrX:4622426-4623256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:833
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 35

               
               
               Conread position:73-834
               
               
               Cow position:chrX:11073681-11074456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:811
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:73-834
               
               
               Cow position:chrX:13405769-13406589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:825
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-834
               
               
               Cow position:chrX:15621004-15621834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:837
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:73-834
               
               
               Cow position:chrX:16808307-16809116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:812
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:73-834
               
               
               Cow position:chrX:21227002-21226177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:830
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:73-834
               
               
               Cow position:chrX:21592815-21591990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:835
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-834
               
               
               Cow position:chrX:22811414-22810593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:829
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:73-834
               
               
               Cow position:chrX:23135104-23134294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:823
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 34

               
               
               Conread position:73-834
               
               
               Cow position:chrX:26441732-26442549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:828
               
               
               Alignm identity:556
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:73-834
               
               
               Cow position:chrX:28879078-28879879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:820
               
               
               Alignm identity:539
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:73-834
               
               
               Cow position:chrX:29226006-29225175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:836
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:73-834
               
               
               Cow position:chrX:42222260-42223057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:819
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 34

               
               
               Conread position:74-382
               
               
               Cow position:chrX:36250337-36250679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):65, 33

               
               
               Conread position:74-387
               
               
               Cow position:chrX:32419691-32419358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):15, 21

               
               
               Conread position:74-467
               
               
               Cow position:chrX:24441723-24442154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:293
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):19, 89

               
               
               Conread position:74-834
               
               
               Cow position:chrX:1550474-1549662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:820
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 17

               
               
               Conread position:96-370
               
               
               Cow position:chrX:6493223-6492927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):8, 27

               
               
               Conread position:106-645
               
               
               Cow position:chrX:10059943-10059357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:122-373
               
               
               Cow position:chrX:4177284-4177011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:122-834
               
               
               Cow position:chrX:27590569-27591323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:766
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 122

               
               
               Conread position:123-522
               
               
               Cow position:chrX:1947498-1947913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:277
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:123-834
               
               
               Cow position:chrX:10866403-10867153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:762
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 321

               
               
               Conread position:124-453
               
               
               Cow position:chrX:14162655-14162291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:128-303
               
               
               Cow position:chrX:12290197-12290008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:138-829
               
               
               Cow position:chrX:30134908-30135610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 18

               
               
               Conread position:142-398
               
               
               Cow position:chrX:41879489-41879754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):81, 11

               
               
               Conread position:142-467
               
               
               Cow position:chrX:18898208-18898564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:251
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:142-542
               
               
               Cow position:chrX:37832031-37832445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 56

               
               
               Conread position:142-544
               
               
               Cow position:chrX:39558924-39559348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:142-834
               
               
               Cow position:chrX:3405912-3406639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:142-834
               
               
               Cow position:chrX:30060329-30059593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:143-293
               
               
               Cow position:chrX:39698443-39698284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-361
               
               
               Cow position:chrX:7695220-7694988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):10, 21

               
               
               Conread position:143-369
               
               
               Cow position:chrX:28706542-28706295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-375
               
               
               Cow position:chrX:40827304-40827552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-376
               
               
               Cow position:chrX:38007542-38007799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-382
               
               
               Cow position:chrX:5892668-5892408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chrX:18451639-18451899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chrX:20032391-20032651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chrX:20742427-20742172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chrX:20878322-20878587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:143-382
               
               
               Cow position:chrX:30825088-30824828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chrX:34719953-34719693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-382
               
               
               Cow position:chrX:39386991-39387250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:143-389
               
               
               Cow position:chrX:13785943-13786205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):80, 16

               
               
               Conread position:143-410
               
               
               Cow position:chrX:19657937-19657644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:143-443
               
               
               Cow position:chrX:26974350-26974019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-445
               
               
               Cow position:chrX:25459199-25459532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:143-453
               
               
               Cow position:chrX:13030771-13031112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chrX:28313865-28313524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-453
               
               
               Cow position:chrX:45236906-45236565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-472
               
               
               Cow position:chrX:40268916-40268561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-504
               
               
               Cow position:chrX:40384486-40384102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-504
               
               
               Cow position:chrX:40601559-40601175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-511
               
               
               Cow position:chrX:41527068-41527470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:287
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):82, 13

               
               
               Conread position:143-521
               
               
               Cow position:chrX:35609428-35609023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:283
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:143-522
               
               
               Cow position:chrX:28156975-28156568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:286
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-524
               
               
               Cow position:chrX:22600975-22601382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-528
               
               
               Cow position:chrX:30196737-30196319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:289
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-528
               
               
               Cow position:chrX:38330822-38330405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:288
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-540
               
               
               Cow position:chrX:2293160-2293594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:300
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-540
               
               
               Cow position:chrX:16046587-16046154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:292
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-540
               
               
               Cow position:chrX:21255216-21254785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:297
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-540
               
               
               Cow position:chrX:29841729-29842172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:296
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-579
               
               
               Cow position:chrX:30159555-30160028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:309
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-579
               
               
               Cow position:chrX:38151128-38150650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-635
               
               
               Cow position:chrX:37781637-37782112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:339
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-644
               
               
               Cow position:chrX:6406786-6406248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:355
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:143-644
               
               
               Cow position:chrX:18244422-18243885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:143-644
               
               
               Cow position:chrX:30455182-30455724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:143-644
               
               
               Cow position:chrX:34554176-34553648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:143-645
               
               
               Cow position:chrX:25289239-25289788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-645
               
               
               Cow position:chrX:32643926-32643377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-660
               
               
               Cow position:chrX:26760128-26760690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-685
               
               
               Cow position:chrX:15140108-15140685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:143-692
               
               
               Cow position:chrX:16465740-16465145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-696
               
               
               Cow position:chrX:10438498-10439074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 13

               
               
               Conread position:143-704
               
               
               Cow position:chrX:13178154-13178779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-727
               
               
               Cow position:chrX:34442003-34442624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-740
               
               
               Cow position:chrX:39556355-39556980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-766
               
               
               Cow position:chrX:20021017-20020337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-768
               
               
               Cow position:chrX:15151236-15151904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 13

               
               
               Conread position:143-776
               
               
               Cow position:chrX:16526229-16525546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:143-782
               
               
               Cow position:chrX:9641992-9642679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 16

               
               
               Conread position:143-785
               
               
               Cow position:chrX:6279166-6279854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 13

               
               
               Conread position:143-806
               
               
               Cow position:chrX:29942590-29941903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:143-812
               
               
               Cow position:chrX:26275578-26274858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-818
               
               
               Cow position:chrX:23387098-23387822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:143-819
               
               
               Cow position:chrX:7572821-7572103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-822
               
               
               Cow position:chrX:323355-322625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-822
               
               
               Cow position:chrX:23038557-23039273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:143-822
               
               
               Cow position:chrX:25451762-25451045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-825
               
               
               Cow position:chrX:3372413-3373145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:143-825
               
               
               Cow position:chrX:26531399-26530679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:143-825
               
               
               Cow position:chrX:27305369-27304637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-827
               
               
               Cow position:chrX:27616243-27615517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-829
               
               
               Cow position:chrX:3361261-3360525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-830
               
               
               Cow position:chrX:30228674-30229409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:143-834
               
               
               Cow position:chrX:2813042-2813778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chrX:4996055-4995351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:143-834
               
               
               Cow position:chrX:5248825-5248089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-834
               
               
               Cow position:chrX:8434764-8435501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chrX:11408894-11409637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chrX:12360328-12359582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:143-834
               
               
               Cow position:chrX:15260179-15260918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chrX:17782939-17782199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chrX:21833309-21832583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-834
               
               
               Cow position:chrX:23022753-23022015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:143-834
               
               
               Cow position:chrX:23396047-23395304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 13

               
               
               Conread position:143-834
               
               
               Cow position:chrX:24109167-24109898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:143-834
               
               
               Cow position:chrX:24588299-24589030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:143-834
               
               
               Cow position:chrX:27318671-27317928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chrX:28588411-28587680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:143-834
               
               
               Cow position:chrX:29760127-29759398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 13

               
               
               Conread position:144-317
               
               
               Cow position:chrX:20976608-20976788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-363
               
               
               Cow position:chrX:10932112-10931873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-394
               
               
               Cow position:chrX:40279248-40278984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:144-471
               
               
               Cow position:chrX:7805815-7805462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):78, 15

               
               
               Conread position:144-480
               
               
               Cow position:chrX:27629289-27628925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-528
               
               
               Cow position:chrX:2648922-2649329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:144-528
               
               
               Cow position:chrX:10301561-10301152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-528
               
               
               Cow position:chrX:19929874-19929457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:294
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:144-540
               
               
               Cow position:chrX:12179118-12178680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:301
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:144-544
               
               
               Cow position:chrX:15114110-15113680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:144-579
               
               
               Cow position:chrX:36840142-36839674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:315
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):58, 47

               
               
               Conread position:144-781
               
               
               Cow position:chrX:34761505-34760816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-825
               
               
               Cow position:chrX:3081692-3082427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 15

               
               
               Conread position:144-832
               
               
               Cow position:chrX:20652847-20652123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:466
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:144-834
               
               
               Cow position:chrX:27982931-27983656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 12

               
               
               Conread position:144-834
               
               
               Cow position:chrX:30163799-30164533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:145-337
               
               
               Cow position:chrX:26755191-26755396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-406
               
               
               Cow position:chrX:34990499-34990219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-410
               
               
               Cow position:chrX:37489164-37488876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-509
               
               
               Cow position:chrX:23316983-23317368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):83, 11

               
               
               Conread position:145-509
               
               
               Cow position:chrX:40365305-40365705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:285
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:145-612
               
               
               Cow position:chrX:40560107-40560614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:145-617
               
               
               Cow position:chrX:47000214-47000734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 17

               
               
               Conread position:145-641
               
               
               Cow position:chrX:7809571-7810098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:327
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):68, 8

               
               
               Conread position:145-764
               
               
               Cow position:chrX:25848241-25847590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 200

               
               
               Conread position:145-813
               
               
               Cow position:chrX:38230829-38231549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:145-825
               
               
               Cow position:chrX:18656367-18657099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-825
               
               
               Cow position:chrX:22578951-22579670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-829
               
               
               Cow position:chrX:32144830-32145553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 15

               
               
               Conread position:145-830
               
               
               Cow position:chrX:28624322-28625051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 589

               
               
               Conread position:145-834
               
               
               Cow position:chrX:28518282-28519014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-834
               
               
               Cow position:chrX:31202279-31201538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:145-834
               
               
               Cow position:chrX:31496174-31495435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:145-834
               
               
               Cow position:chrX:34222189-34221477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 11

               
               
               Conread position:146-803
               
               
               Cow position:chrX:18194129-18193418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 610

               
               
               Conread position:146-829
               
               
               Cow position:chrX:22493446-22492739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 167

               
               
               Conread position:146-834
               
               
               Cow position:chrX:18950299-18951033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 14

               
               
               Conread position:147-283
               
               
               Cow position:chrX:27395599-27395738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-380
               
               
               Cow position:chrX:40545184-40545440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-382
               
               
               Cow position:chrX:27997089-27996831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-382
               
               
               Cow position:chrX:30143846-30144104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-387
               
               
               Cow position:chrX:160866-160605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):12, 127

               
               
               Conread position:147-467
               
               
               Cow position:chrX:35240304-35239957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):12, 206

               
               
               Conread position:147-468
               
               
               Cow position:chrX:865834-865480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:147-480
               
               
               Cow position:chrX:31372900-31372534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 186

               
               
               Conread position:147-555
               
               
               Cow position:chrX:39702289-39701863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:296
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 92

               
               
               Conread position:147-579
               
               
               Cow position:chrX:27095557-27095098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:309
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):12, 129

               
               
               Conread position:147-580
               
               
               Cow position:chrX:32584494-32584970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:327
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:147-635
               
               
               Cow position:chrX:4482391-4481883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 299

               
               
               Conread position:147-694
               
               
               Cow position:chrX:17663481-17664079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 189

               
               
               Conread position:147-714
               
               
               Cow position:chrX:20504084-20503460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:409
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):12, 377

               
               
               Conread position:147-741
               
               
               Cow position:chrX:34993609-34993003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:411
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):12, 79

               
               
               Conread position:147-747
               
               
               Cow position:chrX:9898903-9899552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 197

               
               
               Conread position:147-781
               
               
               Cow position:chrX:44193002-44193685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 289

               
               
               Conread position:147-786
               
               
               Cow position:chrX:25282055-25282749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 487

               
               
               Conread position:147-796
               
               
               Cow position:chrX:35937647-35938324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 279

               
               
               Conread position:147-822
               
               
               Cow position:chrX:7551365-7552092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 607

               
               
               Conread position:147-825
               
               
               Cow position:chrX:4905552-4906289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 284

               
               
               Conread position:147-825
               
               
               Cow position:chrX:16853952-16854659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 260

               
               
               Conread position:147-825
               
               
               Cow position:chrX:22125429-22126079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:441
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):12, 78

               
               
               Conread position:147-831
               
               
               Cow position:chrX:20801211-20800489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 121

               
               
               Conread position:147-834
               
               
               Cow position:chrX:5353865-5354603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 606

               
               
               Conread position:147-834
               
               
               Cow position:chrX:16703109-16702379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 545

               
               
               Conread position:147-834
               
               
               Cow position:chrX:17891977-17891242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 568

               
               
               Conread position:147-834
               
               
               Cow position:chrX:21582880-21582139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 611

               
               
               Conread position:147-834
               
               
               Cow position:chrX:23280445-23279724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:147-834
               
               
               Cow position:chrX:24292241-24292969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 211

               
               
               Conread position:147-834
               
               
               Cow position:chrX:31728901-31728164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 586

               
               
               Conread position:148-382
               
               
               Cow position:chrX:1729425-1729678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 42

               
               
               Conread position:148-387
               
               
               Cow position:chrX:40788571-40788309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:148-510
               
               
               Cow position:chrX:17794266-17793895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):11, 155

               
               
               Conread position:148-549
               
               
               Cow position:chrX:6766308-6766735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:292
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):11, 50

               
               
               Conread position:148-824
               
               
               Cow position:chrX:2382904-2382174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 287

               
               
               Conread position:148-824
               
               
               Cow position:chrX:29790384-29791101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 131

               
               
               Conread position:148-832
               
               
               Cow position:chrX:19878253-19877543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 167

               
               
               Conread position:151-383
               
               
               Cow position:chrX:41106579-41106823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):71, 8

               
               
               Conread position:153-562
               
               
               Cow position:chrX:23415264-23415708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 99

               
               
               Conread position:153-834
               
               
               Cow position:chrX:24482937-24483665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 118

               
               
               Conread position:154-765
               
               
               Cow position:chrX:28633045-28633688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 127

               
               
               Conread position:155-585
               
               
               Cow position:chrX:22888087-22887618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:317
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):67, 172

               
               
               Conread position:157-727
               
               
               Cow position:chrX:6870136-6870758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 442

               
               
               Conread position:157-808
               
               
               Cow position:chrX:3649396-3650104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 306

               
               
               Conread position:158-320
               
               
               Cow position:chrX:20675395-20675233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):69, 134

               
               
               Conread position:158-367
               
               
               Cow position:chrX:15346543-15346774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-381
               
               
               Cow position:chrX:30421722-30421961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chrX:362027-362273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:158-382
               
               
               Cow position:chrX:24173739-24173981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chrX:24509293-24509047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chrX:29169915-29170162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chrX:33763770-33763524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-382
               
               
               Cow position:chrX:34253655-34253409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-410
               
               
               Cow position:chrX:2274343-2274067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):62, 83

               
               
               Conread position:158-410
               
               
               Cow position:chrX:2932294-2932571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-410
               
               
               Cow position:chrX:16688694-16688415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:158-442
               
               
               Cow position:chrX:5406486-5406171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:158-446
               
               
               Cow position:chrX:15091343-15091658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-446
               
               
               Cow position:chrX:45903603-45903284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 312

               
               
               Conread position:158-451
               
               
               Cow position:chrX:8529966-8529641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-452
               
               
               Cow position:chrX:29722642-29722331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 110

               
               
               Conread position:158-453
               
               
               Cow position:chrX:19109615-19109942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-453
               
               
               Cow position:chrX:34519152-34518825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):64, 275

               
               
               Conread position:158-453
               
               
               Cow position:chrX:36479209-36479536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-457
               
               
               Cow position:chrX:40580737-40581069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:158-463
               
               
               Cow position:chrX:14458741-14459076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 328

               
               
               Conread position:158-467
               
               
               Cow position:chrX:2160191-2159850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-512
               
               
               Cow position:chrX:30688491-30688126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):60, 66

               
               
               Conread position:158-528
               
               
               Cow position:chrX:5392149-5392554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:275
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-540
               
               
               Cow position:chrX:2500205-2500624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:277
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):65, 220

               
               
               Conread position:158-548
               
               
               Cow position:chrX:37118323-37117907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 36

               
               
               Conread position:158-551
               
               
               Cow position:chrX:13206378-13205950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-551
               
               
               Cow position:chrX:39730713-39731142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:291
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:158-560
               
               
               Cow position:chrX:39185599-39185160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:304
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):64, 433

               
               
               Conread position:158-576
               
               
               Cow position:chrX:5280427-5280888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:307
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-580
               
               
               Cow position:chrX:3417711-3418176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:319
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-630
               
               
               Cow position:chrX:28503762-28503242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:345
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-633
               
               
               Cow position:chrX:46297086-46296565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:158-636
               
               
               Cow position:chrX:41791286-41791818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 94

               
               
               Conread position:158-644
               
               
               Cow position:chrX:39352218-39352719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 180

               
               
               Conread position:158-646
               
               
               Cow position:chrX:37403810-37404339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:356
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):65, 305

               
               
               Conread position:158-655
               
               
               Cow position:chrX:17994885-17994343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:361
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 329

               
               
               Conread position:158-684
               
               
               Cow position:chrX:36729810-36729230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-685
               
               
               Cow position:chrX:4750946-4751477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 313

               
               
               Conread position:158-692
               
               
               Cow position:chrX:2103831-2103243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:158-692
               
               
               Cow position:chrX:10444989-10445575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 491

               
               
               Conread position:158-718
               
               
               Cow position:chrX:16086697-16087310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 583

               
               
               Conread position:158-734
               
               
               Cow position:chrX:14049768-14050396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:630
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 588

               
               
               Conread position:158-736
               
               
               Cow position:chrX:6454123-6453493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 588

               
               
               Conread position:158-767
               
               
               Cow position:chrX:38227886-38228547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 11

               
               
               Conread position:158-769
               
               
               Cow position:chrX:7277360-7276726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 119

               
               
               Conread position:158-771
               
               
               Cow position:chrX:27759133-27758469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 225

               
               
               Conread position:158-774
               
               
               Cow position:chrX:6372607-6371937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 596

               
               
               Conread position:158-778
               
               
               Cow position:chrX:21686045-21685363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 488

               
               
               Conread position:158-781
               
               
               Cow position:chrX:10412547-10413220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 173

               
               
               Conread position:158-795
               
               
               Cow position:chrX:5646678-5647368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-796
               
               
               Cow position:chrX:18488288-18488978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-801
               
               
               Cow position:chrX:23986676-23985980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 498

               
               
               Conread position:158-818
               
               
               Cow position:chrX:30165247-30165947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 24

               
               
               Conread position:158-819
               
               
               Cow position:chrX:2048538-2047826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-819
               
               
               Cow position:chrX:21768230-21767516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 599

               
               
               Conread position:158-819
               
               
               Cow position:chrX:23341566-23342279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 341

               
               
               Conread position:158-819
               
               
               Cow position:chrX:30199566-30200275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 590

               
               
               Conread position:158-822
               
               
               Cow position:chrX:11976020-11976737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 382

               
               
               Conread position:158-822
               
               
               Cow position:chrX:22612811-22612119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 135

               
               
               Conread position:158-825
               
               
               Cow position:chrX:9011753-9011040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 577

               
               
               Conread position:158-825
               
               
               Cow position:chrX:10528348-10529078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 393

               
               
               Conread position:158-825
               
               
               Cow position:chrX:11145911-11146629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 586

               
               
               Conread position:158-825
               
               
               Cow position:chrX:11744694-11743978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 381

               
               
               Conread position:158-825
               
               
               Cow position:chrX:12145528-12144805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 598

               
               
               Conread position:158-825
               
               
               Cow position:chrX:12307331-12308056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 598

               
               
               Conread position:158-829
               
               
               Cow position:chrX:16359583-16360299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 122

               
               
               Conread position:158-830
               
               
               Cow position:chrX:5320293-5321011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 22

               
               
               Conread position:158-834
               
               
               Cow position:chrX:671577-672294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 119

               
               
               Conread position:158-834
               
               
               Cow position:chrX:2559534-2560250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 586

               
               
               Conread position:158-834
               
               
               Cow position:chrX:5289260-5289987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 593

               
               
               Conread position:158-834
               
               
               Cow position:chrX:5866572-5865843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 595

               
               
               Conread position:158-834
               
               
               Cow position:chrX:6581360-6580632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 594

               
               
               Conread position:158-834
               
               
               Cow position:chrX:7755327-7754603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 236

               
               
               Conread position:158-834
               
               
               Cow position:chrX:8641214-8640485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chrX:9128482-9127752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 596

               
               
               Conread position:158-834
               
               
               Cow position:chrX:9169188-9169908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 281

               
               
               Conread position:158-834
               
               
               Cow position:chrX:13928325-13929036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 154

               
               
               Conread position:158-834
               
               
               Cow position:chrX:14462735-14462018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 108

               
               
               Conread position:158-834
               
               
               Cow position:chrX:14781920-14782648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 594

               
               
               Conread position:158-834
               
               
               Cow position:chrX:16040255-16040980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 109

               
               
               Conread position:158-834
               
               
               Cow position:chrX:16279078-16278357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 303

               
               
               Conread position:158-834
               
               
               Cow position:chrX:18222839-18222110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 269

               
               
               Conread position:158-834
               
               
               Cow position:chrX:19399204-19398475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 595

               
               
               Conread position:158-834
               
               
               Cow position:chrX:19473734-19474451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 110

               
               
               Conread position:158-834
               
               
               Cow position:chrX:19609102-19608374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chrX:21343820-21343093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 593

               
               
               Conread position:158-834
               
               
               Cow position:chrX:22076916-22077643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 381

               
               
               Conread position:158-834
               
               
               Cow position:chrX:22564261-22564987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 590

               
               
               Conread position:158-834
               
               
               Cow position:chrX:24413456-24412724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 347

               
               
               Conread position:158-834
               
               
               Cow position:chrX:24467699-24468424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 593

               
               
               Conread position:158-834
               
               
               Cow position:chrX:27422855-27423571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 115

               
               
               Conread position:158-834
               
               
               Cow position:chrX:28752914-28753639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 277

               
               
               Conread position:158-834
               
               
               Cow position:chrX:29907776-29908505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chrX:29912765-29912038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 593

               
               
               Conread position:158-834
               
               
               Cow position:chrX:30053042-30053771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chrX:30836799-30836084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 65

               
               
               Conread position:158-834
               
               
               Cow position:chrX:35533277-35532553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 40

               
               
               Conread position:158-834
               
               
               Cow position:chrX:36195518-36194793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 589

               
               
               Conread position:158-834
               
               
               Cow position:chrX:36535309-36536032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 346

               
               
               Conread position:158-834
               
               
               Cow position:chrX:37080093-37080817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 365

               
               
               Conread position:158-834
               
               
               Cow position:chrX:37852565-37851835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 596

               
               
               Conread position:158-834
               
               
               Cow position:chrX:38961420-38962149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 593

               
               
               Conread position:158-834
               
               
               Cow position:chrX:39548825-39548100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 595

               
               
               Conread position:158-834
               
               
               Cow position:chrX:39560226-39560963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 596

               
               
               Conread position:158-834
               
               
               Cow position:chrX:39713977-39713248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 561

               
               
               Conread position:159-410
               
               
               Cow position:chrX:30139359-30139637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:159-453
               
               
               Cow position:chrX:39292793-39293119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):63, 274

               
               
               Conread position:159-580
               
               
               Cow position:chrX:3464651-3465114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:308
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):63, 380

               
               
               Conread position:159-644
               
               
               Cow position:chrX:38852584-38852055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 167

               
               
               Conread position:159-717
               
               
               Cow position:chrX:45400615-45401188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 72

               
               
               Conread position:159-834
               
               
               Cow position:chrX:7096883-7096156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 316

               
               
               Conread position:159-834
               
               
               Cow position:chrX:14124821-14125546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 593

               
               
               Conread position:160-337
               
               
               Cow position:chrX:36794418-36794238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):132, 63

               
               
               Conread position:160-366
               
               
               Cow position:chrX:2185663-2185444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 9

               
               
               Conread position:160-381
               
               
               Cow position:chrX:16517708-16517951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:160-382
               
               
               Cow position:chrX:23927761-23927994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 43

               
               
               Conread position:160-390
               
               
               Cow position:chrX:2763988-2763744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):62, 52

               
               
               Conread position:160-430
               
               
               Cow position:chrX:7444331-7444033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):62, 276

               
               
               Conread position:160-480
               
               
               Cow position:chrX:16020958-16021303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):59, 311

               
               
               Conread position:160-502
               
               
               Cow position:chrX:5123935-5124311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:259
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-519
               
               
               Cow position:chrX:24280327-24279951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:265
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):62, 52

               
               
               Conread position:160-522
               
               
               Cow position:chrX:44054227-44053844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):70, 21

               
               
               Conread position:160-528
               
               
               Cow position:chrX:2486206-2486611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:160-528
               
               
               Cow position:chrX:21063895-21063496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):62, 142

               
               
               Conread position:160-537
               
               
               Cow position:chrX:3211121-3211527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:282
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):59, 128

               
               
               Conread position:160-537
               
               
               Cow position:chrX:39939330-39939744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:294
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):62, 53

               
               
               Conread position:160-645
               
               
               Cow position:chrX:5334395-5334922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:346
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):62, 107

               
               
               Conread position:160-692
               
               
               Cow position:chrX:23452021-23452609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 273

               
               
               Conread position:160-693
               
               
               Cow position:chrX:17889458-17890014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 44

               
               
               Conread position:160-733
               
               
               Cow position:chrX:42733290-42732670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 65

               
               
               Conread position:160-741
               
               
               Cow position:chrX:37960028-37959422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:376
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):63, 235

               
               
               Conread position:160-765
               
               
               Cow position:chrX:22870243-22869585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 41

               
               
               Conread position:160-765
               
               
               Cow position:chrX:36692258-36691614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 448

               
               
               Conread position:160-767
               
               
               Cow position:chrX:29849205-29849853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 251

               
               
               Conread position:160-778
               
               
               Cow position:chrX:14801394-14802066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 594

               
               
               Conread position:160-786
               
               
               Cow position:chrX:20953957-20953283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:468
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 488

               
               
               Conread position:160-788
               
               
               Cow position:chrX:20998852-20999529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 264

               
               
               Conread position:160-808
               
               
               Cow position:chrX:30085884-30086554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:444
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):65, 20

               
               
               Conread position:160-819
               
               
               Cow position:chrX:30089629-30090325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 108

               
               
               Conread position:160-819
               
               
               Cow position:chrX:34009171-34008494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 92

               
               
               Conread position:160-819
               
               
               Cow position:chrX:40693297-40693990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 91

               
               
               Conread position:160-825
               
               
               Cow position:chrX:26508646-26507956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 102

               
               
               Conread position:160-825
               
               
               Cow position:chrX:27977407-27978125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 319

               
               
               Conread position:160-830
               
               
               Cow position:chrX:20362726-20363437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 157

               
               
               Conread position:160-830
               
               
               Cow position:chrX:24174528-24175245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 114

               
               
               Conread position:160-830
               
               
               Cow position:chrX:37905426-37904748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:441
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):57, 80

               
               
               Conread position:160-834
               
               
               Cow position:chrX:4299552-4300242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:443
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):78, 70

               
               
               Conread position:160-834
               
               
               Cow position:chrX:5332013-5332734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 107

               
               
               Conread position:160-834
               
               
               Cow position:chrX:6044065-6044755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 61

               
               
               Conread position:160-834
               
               
               Cow position:chrX:14598270-14597554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 508

               
               
               Conread position:160-834
               
               
               Cow position:chrX:16711379-16710664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 28

               
               
               Conread position:160-834
               
               
               Cow position:chrX:17054993-17054268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 594

               
               
               Conread position:160-834
               
               
               Cow position:chrX:30180503-30181227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 463

               
               
               Conread position:160-834
               
               
               Cow position:chrX:41847110-41847836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 108

               
               
               Conread position:160-849
               
               
               Cow position:chrX:2300304-2299578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 277

               
               
               Conread position:161-814
               
               
               Cow position:chrX:23572393-23573100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 279

               
               
               Conread position:161-822
               
               
               Cow position:chrX:16035090-16035798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 273

               
               
               Conread position:161-829
               
               
               Cow position:chrX:2579842-2579124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 500

               
               
               Conread position:162-394
               
               
               Cow position:chrX:29875579-29875820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):120, 63

               
               
               Conread position:162-436
               
               
               Cow position:chrX:24425093-24425399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:162-807
               
               
               Cow position:chrX:37795056-37795733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:412
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 349

               
               
               Conread position:162-824
               
               
               Cow position:chrX:22819477-22818782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 70

               
               
               Conread position:162-834
               
               
               Cow position:chrX:2479205-2479931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 584

               
               
               Conread position:163-567
               
               
               Cow position:chrX:18455361-18455797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:290
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):57, 104

               
               
               Conread position:163-627
               
               
               Cow position:chrX:13430374-13430877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:321
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 78

               
               
               Conread position:163-815
               
               
               Cow position:chrX:17610038-17610736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:438
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 257

               
               
               Conread position:163-834
               
               
               Cow position:chrX:2008289-2009008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 472

               
               
               Conread position:164-375
               
               
               Cow position:chrX:45113095-45112874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 132

               
               
               Conread position:164-522
               
               
               Cow position:chrX:13031243-13031622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):128, 59

               
               
               Conread position:164-548
               
               
               Cow position:chrX:41733771-41734185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 271

               
               
               Conread position:164-717
               
               
               Cow position:chrX:5841717-5841130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:372
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):59, 107

               
               
               Conread position:164-808
               
               
               Cow position:chrX:31261213-31261890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 528

               
               
               Conread position:164-834
               
               
               Cow position:chrX:34034746-34034072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:446
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):61, 220

               
               
               Conread position:165-387
               
               
               Cow position:chrX:21666891-21667123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):57, 153

               
               
               Conread position:165-834
               
               
               Cow position:chrX:27754848-27754122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 589

               
               
               Conread position:166-480
               
               
               Cow position:chrX:23969769-23969426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 83

               
               
               Conread position:167-368
               
               
               Cow position:chrX:27446092-27445871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:167-528
               
               
               Cow position:chrX:1055971-1056366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:273
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):55, 104

               
               
               Conread position:167-540
               
               
               Cow position:chrX:12465449-12465044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):56, 317

               
               
               Conread position:167-825
               
               
               Cow position:chrX:30136449-30137149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 218

               
               
               Conread position:168-814
               
               
               Cow position:chrX:43789423-43790096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:426
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):56, 107

               
               
               Conread position:169-382
               
               
               Cow position:chrX:3596878-3596643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:169-638
               
               
               Cow position:chrX:24309697-24310201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:332
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):56, 29

               
               
               Conread position:169-819
               
               
               Cow position:chrX:15977538-15978239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 582

               
               
               Conread position:170-477
               
               
               Cow position:chrX:29876643-29876983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:170-738
               
               
               Cow position:chrX:27450646-27451229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:395
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):46, 105

               
               
               Conread position:171-834
               
               
               Cow position:chrX:11461585-11462296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 16

               
               
               Conread position:172-644
               
               
               Cow position:chrX:30681092-30681606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 91

               
               
               Conread position:179-534
               
               
               Cow position:chrX:29700548-29700929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 175

               
               
               Conread position:179-825
               
               
               Cow position:chrX:22538628-22539328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 541

               
               
               Conread position:187-540
               
               
               Cow position:chrX:12346293-12345902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:187-825
               
               
               Cow position:chrX:40070213-40070897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 290

               
               
               Conread position:188-376
               
               
               Cow position:chrX:36513569-36513363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:189-612
               
               
               Cow position:chrX:35024450-35023993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:304
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):33, 146

               
               
               Conread position:189-717
               
               
               Cow position:chrX:16325134-16325712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 100

               
               
               Conread position:189-830
               
               
               Cow position:chrX:21494810-21494138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:189-834
               
               
               Cow position:chrX:29915951-29916648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 155

               
               
               Conread position:195-522
               
               
               Cow position:chrX:37134248-37134605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 68

               
               
               Conread position:196-834
               
               
               Cow position:chrX:32063793-32064470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 278

               
               
               Conread position:201-645
               
               
               Cow position:chrX:8590965-8590471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:330
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:201-796
               
               
               Cow position:chrX:8482822-8482173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 112

               
               
               Conread position:201-828
               
               
               Cow position:chrX:33584071-33583390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 110

               
               
               Conread position:206-834
               
               
               Cow position:chrX:26230388-26231061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 537

               
               
               Conread position:208-782
               
               
               Cow position:chrX:21415235-21414616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 537

               
               
               Conread position:208-796
               
               
               Cow position:chrX:5365231-5365856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:402
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):94, 44

               
               
               Conread position:208-812
               
               
               Cow position:chrX:29879912-29880559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 308

               
               
               Conread position:208-825
               
               
               Cow position:chrX:29099784-29099126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 62

               
               
               Conread position:208-834
               
               
               Cow position:chrX:21389946-21389275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 530

               
               
               Conread position:208-834
               
               
               Cow position:chrX:21793959-21793288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 538

               
               
               Conread position:209-819
               
               
               Cow position:chrX:26447446-26446812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 194

               
               
               Conread position:212-834
               
               
               Cow position:chrX:29083431-29082773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 398

               
               
               Conread position:214-811
               
               
               Cow position:chrX:28557713-28557087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 7

               
               
               Conread position:221-825
               
               
               Cow position:chrX:20356640-20357293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 528

               
               
               Conread position:224-645
               
               
               Cow position:chrX:33685481-33685022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:302
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:224-739
               
               
               Cow position:chrX:11990801-11991351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 43

               
               
               Conread position:227-645
               
               
               Cow position:chrX:619912-620369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 443

               
               
               Conread position:235-579
               
               
               Cow position:chrX:15039739-15040101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):102, 67

               
               
               Conread position:235-645
               
               
               Cow position:chrX:34564416-34564005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:295
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):106, 40

               
               
               Conread position:235-834
               
               
               Cow position:chrX:5361349-5360707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 508

               
               
               Conread position:243-529
               
               
               Cow position:chrX:21662367-21662062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):49, 153

               
               
               Conread position:243-686
               
               
               Cow position:chrX:28646948-28647425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:314
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):96, 59

               
               
               Conread position:248-631
               
               
               Cow position:chrX:12290040-12289641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:260
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 18

               
               
               Conread position:248-742
               
               
               Cow position:chrX:40496274-40496787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:334
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):91, 12

               
               
               Conread position:250-835
               
               
               Cow position:chrX:4768005-4767399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 36

               
               
               Conread position:253-453
               
               
               Cow position:chrX:8144564-8144779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:255-717
               
               
               Cow position:chrX:1616922-1617415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 13

               
               
               Conread position:258-471
               
               
               Cow position:chrX:2524426-2524651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):81, 28

               
               
               Conread position:258-515
               
               
               Cow position:chrX:20790234-20790505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):83, 28

               
               
               Conread position:259-815
               
               
               Cow position:chrX:43075190-43074603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:260-823
               
               
               Cow position:chrX:29288301-29287704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:261-551
               
               
               Cow position:chrX:21626389-21626703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):13, 197

               
               
               Conread position:261-782
               
               
               Cow position:chrX:21818176-21818699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 27

               
               
               Conread position:261-791
               
               
               Cow position:chrX:35287728-35287165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 15

               
               
               Conread position:267-809
               
               
               Cow position:chrX:8400257-8400825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:381
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):47, 102

               
               
               Conread position:267-834
               
               
               Cow position:chrX:41884883-41885480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 25

               
               
               Conread position:269-824
               
               
               Cow position:chrX:28133393-28132812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 196

               
               
               Conread position:269-829
               
               
               Cow position:chrX:24317119-24316519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 468

               
               
               Conread position:269-830
               
               
               Cow position:chrX:29766288-29765701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:384
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):120, 35

               
               
               Conread position:276-628
               
               
               Cow position:chrX:22118206-22118586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):63, 37

               
               
               Conread position:277-551
               
               
               Cow position:chrX:28866723-28867020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:279-834
               
               
               Cow position:chrX:27071131-27070532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:395
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):62, 42

               
               
               Conread position:282-808
               
               
               Cow position:chrX:23218353-23217801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:351
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):63, 224

               
               
               Conread position:288-795
               
               
               Cow position:chrX:33537853-33537320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 113

               
               
               Conread position:290-549
               
               
               Cow position:chrX:150747-150477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):49, 112

               
               
               Conread position:290-549
               
               
               Cow position:chrX:3144904-3144626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):54, 31

               
               
               Conread position:290-579
               
               
               Cow position:chrX:38218253-38217941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):50, 228

               
               
               Conread position:290-644
               
               
               Cow position:chrX:20675144-20674760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:269
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:290-644
               
               
               Cow position:chrX:20792412-20792034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):49, 102

               
               
               Conread position:290-693
               
               
               Cow position:chrX:45373832-45374262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):49, 178

               
               
               Conread position:290-819
               
               
               Cow position:chrX:28605820-28606372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:372
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):49, 76

               
               
               Conread position:290-822
               
               
               Cow position:chrX:25817546-25818110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 140

               
               
               Conread position:290-834
               
               
               Cow position:chrX:6235580-6236146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 86

               
               
               Conread position:291-644
               
               
               Cow position:chrX:17290455-17290074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):48, 199

               
               
               Conread position:291-825
               
               
               Cow position:chrX:24346324-24345755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 444

               
               
               Conread position:291-834
               
               
               Cow position:chrX:7485082-7484504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 444

               
               
               Conread position:291-834
               
               
               Cow position:chrX:18023717-18024295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 444

               
               
               Conread position:292-643
               
               
               Cow position:chrX:3155311-3155687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:250
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):46, 121

               
               
               Conread position:292-774
               
               
               Cow position:chrX:16085384-16085901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 443

               
               
               Conread position:292-822
               
               
               Cow position:chrX:26622548-26623096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 129

               
               
               Conread position:292-834
               
               
               Cow position:chrX:30964712-30965289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 443

               
               
               Conread position:293-834
               
               
               Cow position:chrX:23221772-23222329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:294-738
               
               
               Cow position:chrX:4407155-4406679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 371

               
               
               Conread position:299-802
               
               
               Cow position:chrX:4326415-4326960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:359
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):40, 219

               
               
               Conread position:299-806
               
               
               Cow position:chrX:32329471-32328928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:333
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):86, 438

               
               
               Conread position:299-834
               
               
               Cow position:chrX:34094973-34094403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 436

               
               
               Conread position:300-834
               
               
               Cow position:chrX:15121896-15122464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 7

               
               
               Conread position:311-834
               
               
               Cow position:chrX:9095897-9095340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:369
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):37, 64

               
               
               Conread position:315-808
               
               
               Cow position:chrX:6655785-6656292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 73

               
               
               Conread position:316-834
               
               
               Cow position:chrX:39698011-39697465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 129

               
               
               Conread position:333-727
               
               
               Cow position:chrX:6201755-6201337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:279
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):46, 387

               
               
               Conread position:336-819
               
               
               Cow position:chrX:27498055-27497544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 392

               
               
               Conread position:336-825
               
               
               Cow position:chrX:7120833-7120313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 395

               
               
               Conread position:336-834
               
               
               Cow position:chrX:26618350-26617828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 395

               
               
               Conread position:339-834
               
               
               Cow position:chrX:16803644-16804169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 391

               
               
               Conread position:341-819
               
               
               Cow position:chrX:26755421-26755927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 138

               
               
               Conread position:349-765
               
               
               Cow position:chrX:19211877-19212316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:286
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):40, 263

               
               
               Conread position:349-808
               
               
               Cow position:chrX:4414077-4413602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:306
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):16, 176

               
               
               Conread position:351-751
               
               
               Cow position:chrX:38999042-38998627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):31, 112

               
               
               Conread position:353-822
               
               
               Cow position:chrX:5375068-5375567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 302

               
               
               Conread position:355-611
               
               
               Cow position:chrX:9261614-9261339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):28, 105

               
               
               Conread position:374-768
               
               
               Cow position:chrX:17229147-17228738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:280
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):42, 74

               
               
               Conread position:375-834
               
               
               Cow position:chrX:16046150-16045669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 347

               
               
               Conread position:379-825
               
               
               Cow position:chrX:12996732-12997209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 344

               
               
               Conread position:380-819
               
               
               Cow position:chrX:40827934-40828391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:309
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):36, 90

               
               
               Conread position:385-834
               
               
               Cow position:chrX:37488123-37487644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 5

               
               
               Conread position:388-616
               
               
               Cow position:chrX:29047284-29047035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:388-822
               
               
               Cow position:chrX:20742022-20741567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:315
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):27, 340

               
               
               Conread position:390-771
               
               
               Cow position:chrX:9227735-9228135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):25, 123

               
               
               Conread position:421-777
               
               
               Cow position:chrX:6854586-6854946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 297

               
               
               Conread position:421-807
               
               
               Cow position:chrX:24447086-24446678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-815
               
               
               Cow position:chrX:3582066-3581651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):75, 100

               
               
               Conread position:421-815
               
               
               Cow position:chrX:5294214-5294629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):11, 235

               
               
               Conread position:421-825
               
               
               Cow position:chrX:24734793-24734370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 50

               
               
               Conread position:421-834
               
               
               Cow position:chrX:21892640-21892205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 301

               
               
               Conread position:421-834
               
               
               Cow position:chrX:24321495-24321930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:297
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):9, 302

               
               
               Conread position:421-834
               
               
               Cow position:chrX:27595094-27595528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 216

               
               
               Conread position:421-834
               
               
               Cow position:chrX:30435485-30435921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 302

               
               
               Conread position:422-692
               
               
               Cow position:chrX:37815309-37815017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):8, 85

               
               
               Conread position:427-834
               
               
               Cow position:chrX:9837040-9836609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:299
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:428-807
               
               
               Cow position:chrX:9535667-9535262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:282
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):66, 295

               
               
               Conread position:429-831
               
               
               Cow position:chrX:2185348-2184940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):42, 187

               
               
               Conread position:430-782
               
               
               Cow position:chrX:22616249-22616622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:259
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):46, 291

               
               
               Conread position:432-834
               
               
               Cow position:chrX:29170661-29171083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 289

               
               
               Conread position:434-801
               
               
               Cow position:chrX:4558440-4558055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 202

               
               
               Conread position:435-822
               
               
               Cow position:chrX:13415328-13415721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:287
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):54, 29

               
               
               Conread position:435-825
               
               
               Cow position:chrX:33830157-33829751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:282
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):57, 13

               
               
               Conread position:438-828
               
               
               Cow position:chrX:24260285-24260670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:270
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):142, 44

               
               
               Conread position:461-777
               
               
               Cow position:chrX:13911854-13912188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 254

               
               
               Conread position:464-815
               
               
               Cow position:chrX:32129865-32129491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:255
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):24, 250

               
               
               Conread position:491-713
               
               
               Cow position:chrX:37186938-37186700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 219

               
               
               Conread position:491-783
               
               
               Cow position:chrX:865165-864856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):31, 228

               
               
               Conread position:491-802
               
               
               Cow position:chrX:15349154-15349484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-824
               
               
               Cow position:chrX:45112850-45112514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):28, 46

               
               
               Conread position:491-825
               
               
               Cow position:chrX:18463410-18463057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 228

               
               
               Conread position:491-829
               
               
               Cow position:chrX:12186157-12185802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 224

               
               
               Conread position:491-834
               
               
               Cow position:chrX:5427139-5426788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 44

               
               
               Conread position:491-834
               
               
               Cow position:chrX:24443996-24444358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:253
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):34, 230

               
               
               Conread position:491-834
               
               
               Cow position:chrX:38587855-38588213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 228

               
               
               Conread position:498-801
               
               
               Cow position:chrX:31964978-31964660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):28, 59

               
               
               Conread position:500-834
               
               
               Cow position:chrX:11457764-11458117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:244
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):25, 219

               
               
               Conread position:502-795
               
               
               Cow position:chrX:21662061-21661754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):68, 32

               
               
               Conread position:504-831
               
               
               Cow position:chrX:16024117-16023775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:247
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):21, 129

               
               
               Conread position:505-725
               
               
               Cow position:chrX:27029164-27028937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 22

               
               
               Conread position:505-808
               
               
               Cow position:chrX:41905696-41906008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:505-825
               
               
               Cow position:chrX:11950736-11951064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:505-826
               
               
               Cow position:chrX:9068099-9067772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:505-834
               
               
               Cow position:chrX:5298206-5298543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 30

               
               
               Conread position:508-807
               
               
               Cow position:chrX:15590399-15590702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:511-834
               
               
               Cow position:chrX:39564257-39564588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 192

               
               
               Conread position:513-807
               
               
               Cow position:chrX:303142-302843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):57, 24

               
               
               Conread position:514-775
               
               
               Cow position:chrX:42042321-42042589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):69, 27

               
               
               Conread position:514-834
               
               
               Cow position:chrX:30073451-30073133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):129, 23

               
               
               Conread position:514-834
               
               
               Cow position:chrX:30286430-30286108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:521-796
               
               
               Cow position:chrX:37840165-37839883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:521-834
               
               
               Cow position:chrX:43436882-43437202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:535-834
               
               
               Cow position:chrX:21318456-21318146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 13

               
               
               Conread position:538-834
               
               
               Cow position:chrX:4133911-4134216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):8, 173

               
               
               Conread position:544-807
               
               
               Cow position:chrX:388129-387858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 62

               
               
               Conread position:544-825
               
               
               Cow position:chrX:21646283-21646573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):29, 165

               
               
               Conread position:544-834
               
               
               Cow position:chrX:29877539-29877827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):29, 78

               
               
               Conread position:545-834
               
               
               Cow position:chrX:13071450-13071748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):18, 164

               
               
               Conread position:545-834
               
               
               Cow position:chrX:13092010-13092308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:215
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):18, 164

               
               
               Conread position:550-822
               
               
               Cow position:chrX:12464998-12464719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):22, 148

               
               
               Conread position:564-834
               
               
               Cow position:chrX:1977839-1977573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 35

               
               
               Conread position:569-738
               
               
               Cow position:chrX:900662-900834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):78, 130

               
               
               Conread position:569-807
               
               
               Cow position:chrX:45042119-45042355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):95, 133

               
               
               Conread position:569-818
               
               
               Cow position:chrX:6247249-6247503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):78, 52

               
               
               Conread position:569-824
               
               
               Cow position:chrX:21627465-21627720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):72, 39

               
               
               Conread position:569-824
               
               
               Cow position:chrX:41880157-41880414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 130

               
               
               Conread position:569-834
               
               
               Cow position:chrX:13282434-13282165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):68, 135

               
               
               Conread position:569-834
               
               
               Cow position:chrX:24462471-24462741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):68, 133

               
               
               Conread position:569-834
               
               
               Cow position:chrX:29094351-29094621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 136

               
               
               Conread position:579-814
               
               
               Cow position:chrX:10410113-10410350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):56, 123

               
               
               Conread position:586-819
               
               
               Cow position:chrX:21750559-21750797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):60, 119

               
               
               Conread position:591-826
               
               
               Cow position:chrX:3465416-3465656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-834
               
               
               Cow position:chrX:1948484-1948732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):53, 114

               
               
               Conread position:591-834
               
               
               Cow position:chrX:3418272-3418520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):56, 78

               
               
               Conread position:591-834
               
               
               Cow position:chrX:5550326-5550078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-834
               
               
               Cow position:chrX:22837927-22837679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:591-834
               
               
               Cow position:chrX:24928740-24928492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:592-832
               
               
               Cow position:chrX:15176193-15176437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):55, 106

               
               
               Conread position:594-825
               
               
               Cow position:chrX:35023668-35023438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):186, 52

               
               
               Conread position:601-834
               
               
               Cow position:chrX:9261286-9261047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 103

               
               
               Conread position:606-825
               
               
               Cow position:chrX:2487571-2487353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 72

               
               
               Conread position:606-834
               
               
               Cow position:chrX:2501517-2501286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):40, 95

               
               
               Conread position:609-825
               
               
               Cow position:chrX:38150524-38150303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):28, 98

               
               
               Conread position:611-834
               
               
               Cow position:chrX:30426275-30426060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:612-823
               
               
               Cow position:chrX:22119081-22119295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):34, 93

               
               
               Conread position:645-823
               
               
               Cow position:chrX:6671837-6671664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:645-825
               
               
               Cow position:chrX:46296251-46296074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:645-834
               
               
               Cow position:chrX:4481584-4481396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:645-834
               
               
               Cow position:chrX:12312116-12312304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:645-834
               
               
               Cow position:chrX:39694689-39694506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):169, 51

               
               
               Conread position:647-834
               
               
               Cow position:chrX:12345825-12345639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:651-825
               
               
               Cow position:chrX:34553270-34553101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):116, 13

               
               
               Conread position:652-834
               
               
               Cow position:chrX:20725846-20725668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:658-829
               
               
               Cow position:chrX:18243478-18243648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):9, 44

               
               
               Conread position:660-808
               
               
               Cow position:chrX:21500567-21500419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):6, 37

               
               
               Conread position:665-815
               
               
               Cow position:chrX:8514155-8514007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:666-806
               
               
               Cow position:chrX:10300263-10300402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:666-831
               
               
               Cow position:chrX:13431072-13431229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:666-834
               
               
               Cow position:chrX:30167216-30167383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:670-834
               
               
               Cow position:chrX:37815011-37814848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:671-834
               
               
               Cow position:chrX:9086569-9086407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:672-824
               
               
               Cow position:chrX:41305330-41305481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:681-834
               
               
               Cow position:chrX:27339461-27339613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:682-834
               
               
               Cow position:chrX:17664348-17664499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:688-825
               
               
               Cow position:chrX:28648038-28648175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:696-834
               
               
               Cow position:chrX:13179011-13179149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-834
               
               
               Cow position:chrX:5280951-5281087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-834
               
               
               Cow position:chrX:14459572-14459708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-834
               
               
               Cow position:chrX:15142327-15142463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:701-834
               
               
               Cow position:chrX:23453222-23453355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:703-824
               
               
               Cow position:chrX:22577627-22577750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:715-834
               
               
               Cow position:chrX:26434196-26434078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):8, 0